Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:27 (3840332): wrapper (7.7.26015): starting
00:10:27 (3840332): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:10:27] Arguments: --nthreads 9
[2025-11-26 00:10:27] Threads: 9
[2025-11-26 00:10:27] Checking for CVMFS
[2025-11-26 00:10:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:29] 2.13.2.0 11163 36866 294288 153309 1 553 23728649 40960001 13208 16776704 0 33886807 99.626 29985188 39181 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:10:29] CVMFS is ok
[2025-11-26 00:10:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:29] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:29] Checking for apptainer binary...
[2025-11-26 00:10:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:29] Running /usr/bin/apptainer --version
[2025-11-26 00:10:30] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:32] c-210-35-1.aglt2.org
[2025-11-26 00:10:32] apptainer works
[2025-11-26 00:10:32] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:32] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:32] Starting ATLAS job with PandaID=6896716167
[2025-11-26 00:10:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:20:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:20:12] 2025-11-27 16:19:37,673 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:20:12] 2025-11-27 16:19:37,720 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2902.3936785714286
[2025-11-27 11:20:12] 2025-11-27 16:19:37,741 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896716167/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:20:12] 2025-11-27 16:19:37,742 | INFO     | extracted standard info from prmon json
[2025-11-27 11:20:12] 2025-11-27 16:19:37,742 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:20:12] 2025-11-27 16:19:37,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:20:12] 2025-11-27 16:19:37,801 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:20:12] 2025-11-27 16:19:37,807 | INFO     | sum of square deviations: 2750401004631.3105
[2025-11-27 11:20:12] 2025-11-27 16:19:37,958 | INFO     | sum of deviations: 11432223029566.596
[2025-11-27 11:20:12] 2025-11-27 16:19:37,959 | INFO     | mean x: 1764197224.6207728
[2025-11-27 11:20:12] 2025-11-27 16:19:37,959 | INFO     | mean y: 3125242.599516908
[2025-11-27 11:20:12] 2025-11-27 16:19:37,959 | INFO     | intersect: -7329876783.667076
[2025-11-27 11:20:12] 2025-11-27 16:19:37,966 | INFO     | chi2: 9.153487049003195
[2025-11-27 11:20:12] 2025-11-27 16:19:38,016 | INFO     | sum of square deviations: 2730523462179.664
[2025-11-27 11:20:12] 2025-11-27 16:19:38,215 | INFO     | sum of deviations: 12228634463169.785
[2025-11-27 11:20:12] 2025-11-27 16:19:38,215 | INFO     | mean x: 1764197072.1380146
[2025-11-27 11:20:12] 2025-11-27 16:19:38,215 | INFO     | mean y: 3131351.7762711863
[2025-11-27 11:20:12] 2025-11-27 16:19:38,216 | INFO     | intersect: -7897815633.293304
[2025-11-27 11:20:12] 2025-11-27 16:19:38,218 | INFO     | chi2: 5.681309077313406
[2025-11-27 11:20:12] 2025-11-27 16:19:38,220 | INFO     | current chi2=5.681309077313406 (change=37.932844096479116 %)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,226 | INFO     | sum of square deviations: 2710741968039.293
[2025-11-27 11:20:12] 2025-11-27 16:19:38,333 | INFO     | sum of deviations: 12657544394529.307
[2025-11-27 11:20:12] 2025-11-27 16:19:38,334 | INFO     | mean x: 1764196919.6553397
[2025-11-27 11:20:12] 2025-11-27 16:19:38,334 | INFO     | mean y: 3134657.9694174756
[2025-11-27 11:20:12] 2025-11-27 16:19:38,334 | INFO     | intersect: -8234610245.276065
[2025-11-27 11:20:12] 2025-11-27 16:19:38,337 | INFO     | chi2: 4.500432780247042
[2025-11-27 11:20:12] 2025-11-27 16:19:38,338 | INFO     | current chi2=4.500432780247042 (change=20.785285239661352 %)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,338 | INFO     | right removable region: 2059
[2025-11-27 11:20:12] 2025-11-27 16:19:38,341 | INFO     | sum of square deviations: 2730514470779.667
[2025-11-27 11:20:12] 2025-11-27 16:19:38,465 | INFO     | sum of deviations: 10666058046302.43
[2025-11-27 11:20:12] 2025-11-27 16:19:38,465 | INFO     | mean x: 1764197377.1380146
[2025-11-27 11:20:12] 2025-11-27 16:19:38,465 | INFO     | mean y: 3131116.9423728813
[2025-11-27 11:20:12] 2025-11-27 16:19:38,466 | INFO     | intersect: -6888255774.083908
[2025-11-27 11:20:12] 2025-11-27 16:19:38,468 | INFO     | chi2: 6.154184123987208
[2025-11-27 11:20:12] 2025-11-27 16:19:38,468 | INFO     | current chi2=6.154184123987208 (change=32.76677957765404 %)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,471 | INFO     | sum of square deviations: 2710731414639.931
[2025-11-27 11:20:12] 2025-11-27 16:19:38,551 | INFO     | time since job start (126447s) is within the limit (172800.0s)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,580 | INFO     | sum of deviations: 10444611424096.365
[2025-11-27 11:20:12] 2025-11-27 16:19:38,580 | INFO     | mean x: 1764197529.626699
[2025-11-27 11:20:12] 2025-11-27 16:19:38,580 | INFO     | mean y: 3132823.78592233
[2025-11-27 11:20:12] 2025-11-27 16:19:38,580 | INFO     | intersect: -6794426525.98433
[2025-11-27 11:20:12] 2025-11-27 16:19:38,583 | INFO     | chi2: 6.037606426913914
[2025-11-27 11:20:12] 2025-11-27 16:19:38,583 | INFO     | current chi2=6.037606426913914 (change=1.89428354310863 %)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,583 | INFO     | left removable region: 20
[2025-11-27 11:20:12] 2025-11-27 16:19:38,585 | INFO     | sum of square deviations: 2628685495135.1436
[2025-11-27 11:20:12] 2025-11-27 16:19:38,659 | INFO     | sum of deviations: 11383271752349.117
[2025-11-27 11:20:12] 2025-11-27 16:19:38,659 | INFO     | mean x: 1764197499.1579206
[2025-11-27 11:20:12] 2025-11-27 16:19:38,659 | INFO     | mean y: 3145710.325649828
[2025-11-27 11:20:12] 2025-11-27 16:19:38,660 | INFO     | intersect: -7636543250.14349
[2025-11-27 11:20:12] 2025-11-27 16:19:38,662 | INFO     | chi2: 1.0764936858538623
[2025-11-27 11:20:12] 2025-11-27 16:19:38,662 | INFO     | current memory leak: 4.33 B/s (using 2039 data points, chi2=1.08)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,664 | INFO     | could have reported an average CPU frequency of 2787 MHz (72 samples)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,664 | INFO     | ..............................
[2025-11-27 11:20:12] 2025-11-27 16:19:38,664 | INFO     | . Timing measurements:
[2025-11-27 11:20:12] 2025-11-27 16:19:38,664 | INFO     | . get job = 0 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,664 | INFO     | . initial setup = 7 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,664 | INFO     | . payload setup = 54 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,665 | INFO     | . stage-in = 0 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,665 | INFO     | . payload execution = 126252 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,665 | INFO     | . stage-out = 4 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,665 | INFO     | . log creation = 1 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,667 | INFO     | ..............................
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | 
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | job summary report
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | --------------------------------------------------
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | PanDA job id: 6896716167
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | task id: 47556161
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | errors: (none)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:20:12] 2025-11-27 16:19:38,756 | INFO     | pilot state: finished 
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | transexitcode: 0
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | exeerrorcode: 0
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | exeerrordiag: 
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | exitcode: 0
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | exitmsg: OK
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | cpuconsumptiontime: 265604 s
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | nevents: 1000
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | neventsw: 0
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | pid: 3873327
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | pgrp: 3873327
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | corecount: 9
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | event service: False
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | sizes: {0: 2283980, 2: 2284064, 3: 2284263, 15: 2284263, 26: 2284291, 37: 2284319, 49: 2284475, 51: 2284765, 61: 2284793, 126310: 2367493, 126316: 2376487, 126318:
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | --------------------------------------------------
[2025-11-27 11:20:12] 2025-11-27 16:19:38,757 | INFO     | 
[2025-11-27 11:20:12] 2025-11-27 16:19:38,758 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 11:20:12] 2025-11-27 16:19:38,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,781 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,781 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:20:12] 2025-11-27 16:19:38,781 | INFO     | job 6896716167 has completed (purged errors)
[2025-11-27 11:20:12] 2025-11-27 16:19:38,781 | INFO     | overall cleanup function is called
[2025-11-27 11:20:12] 2025-11-27 16:19:39,796 | INFO     | --- collectZombieJob: --- 10, [3873327]
[2025-11-27 11:20:12] 2025-11-27 16:19:39,796 | INFO     | zombie collector waiting for pid 3873327
[2025-11-27 11:20:12] 2025-11-27 16:19:39,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:20:12] 2025-11-27 16:19:39,796 | INFO     | collected zombie processes
[2025-11-27 11:20:12] 2025-11-27 16:19:39,796 | INFO     | will attempt to kill all subprocesses of pid=3873327
[2025-11-27 11:20:12] 2025-11-27 16:19:40,242 | INFO     | process IDs to be killed: [3873327] (in reverse order)
[2025-11-27 11:20:12] 2025-11-27 16:19:40,355 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:20:12] 2025-11-27 16:19:40,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:20:12] 2025-11-27 16:19:40,366 | INFO     | did not find any defunct processes belonging to 3873327
[2025-11-27 11:20:12] 2025-11-27 16:19:40,375 | INFO     | did not find any defunct processes belonging to 3873327
[2025-11-27 11:20:12] 2025-11-27 16:19:40,377 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:20:12] 2025-11-27 16:19:40,377 | INFO     | ready for new job
[2025-11-27 11:20:12] 2025-11-27 16:19:40,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:20:12] 2025-11-27 16:19:40,385 | INFO     | ***************************************
[2025-11-27 11:20:12] 2025-11-27 16:19:40,386 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:20:12] 2025-11-27 16:19:40,386 | INFO     | ***************************************
[2025-11-27 11:20:12] 2025-11-27 16:19:40,386 | INFO     | 
[2025-11-27 11:20:12] 2025-11-27 16:19:40,389 | INFO     | architecture information:
[2025-11-27 11:20:12] 2025-11-27 16:19:40,390 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:20:12] 2025-11-27 16:19:40,437 | INFO     | cat /etc/os-release:
[2025-11-27 11:20:12] NAME="CentOS Linux"
[2025-11-27 11:20:12] VERSION="7 (Core)"
[2025-11-27 11:20:12] ID="centos"
[2025-11-27 11:20:12] ID_LIKE="rhel fedora"
[2025-11-27 11:20:12] VERSION_ID="7"
[2025-11-27 11:20:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:20:12] ANSI_COLOR="0;31"
[2025-11-27 11:20:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:20:12] HOME_URL="https://www.centos.org/"
[2025-11-27 11:20:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:20:12] 
[2025-11-27 11:20:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:20:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:20:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:20:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:20:12] 
[2025-11-27 11:20:12] 2025-11-27 16:19:40,437 | INFO     | ***************************************
[2025-11-27 11:20:12] 2025-11-27 16:19:40,941 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 11:20:12] 2025-11-27 16:19:40,963 | INFO     | sufficient remaining disk space (70923583488 B)
[2025-11-27 11:20:12] 2025-11-27 16:19:40,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:20:12] 2025-11-27 16:19:40,964 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:20:12] 2025-11-27 16:19:40,964 | INFO     | update_server=False
[2025-11-27 11:20:12] 2025-11-27 16:19:40,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:20:12] 2025-11-27 16:19:41,062 | INFO     | all payload control threads have been joined
[2025-11-27 11:20:12] 2025-11-27 16:19:41,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:20:12] 2025-11-27 16:19:41,461 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:20:12] 2025-11-27 16:19:41,461 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:20:12] 2025-11-27 16:19:41,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:20:12] 2025-11-27 16:19:41,461 | INFO     | will abort loop
[2025-11-27 11:20:12] 2025-11-27 16:19:41,589 | INFO     | all data control threads have been joined
[2025-11-27 11:20:12] 2025-11-27 16:19:41,919 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:20:12] 2025-11-27 16:19:41,971 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,017 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,018 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,070 | INFO     | [payload] control thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,469 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,496 | INFO     | [job] validate thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,506 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,511 | INFO     | all job control threads have been joined
[2025-11-27 11:20:12] 2025-11-27 16:19:42,595 | INFO     | [data] control thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,701 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:42,789 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:43,033 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:43,134 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:43,371 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:43,517 | INFO     | [job] control thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:43,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:20:12] 2025-11-27 16:19:44,779 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:19:45,927 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:20:12] 2025-11-27 16:20:04,818 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:20:12] 2025-11-27 16:20:06,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430925842240)>', '<ExcThread(monitor, started 140430431729408)>']
[2025-11-27 11:20:12] 2025-11-27 16:20:11,547 | INFO     | all workflow threads have been joined
[2025-11-27 11:20:12] 2025-11-27 16:20:11,548 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:20:12] 2025-11-27 16:20:11,548 | INFO     | traces error code: 0
[2025-11-27 11:20:12] 2025-11-27 16:20:11,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:20:12] 2025-11-27 16:20:12,003 | INFO     | PID=3852257 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:20:12] 2025-11-27 16:20:12,003 | INFO     | .. there are 11 such processes running
[2025-11-27 11:20:12] 2025-11-27 16:20:12,003 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:20:12] 2025-11-27 16:20:12,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:20:12] 2025-11-27 16:20:12,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:20:12] 2025-11-27 16:20:12,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:20:12] 2025-11-27 16:20:12,004 | INFO     | [monitor] control thread has ended
[2025-11-27 11:20:12] 2025-11-27 16:20:12,215 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:20:12] 2025-11-27 16:20:12,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:20:12] 2025-11-27 16:20:12,232 [wrapper] pilotpid: 3852257
[2025-11-27 11:20:12] 2025-11-27 16:20:12,241 [wrapper] Pilot exit status: 0
[2025-11-27 11:20:12] 2025-11-27 16:20:12,280 [wrapper] pandaids: 6896716167
[2025-11-27 11:20:12] 2025-11-27 16:20:12,386 [wrapper] cleanup supervisor_pilot 2951961 3852258
[2025-11-27 11:20:12] 2025-11-27 16:20:12,397 [wrapper] Test setup, not cleaning
[2025-11-27 11:20:12] 2025-11-27 16:20:12,413 [wrapper] apfmon messages muted
[2025-11-27 11:20:12] 2025-11-27 16:20:12,419 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:20:12] 2025-11-27 16:20:12,425 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:20:12]  *** Error codes and diagnostics ***
[2025-11-27 11:20:12]     "exeErrorCode": 0,
[2025-11-27 11:20:12]     "exeErrorDiag": "",
[2025-11-27 11:20:12]     "pilotErrorCode": 0,
[2025-11-27 11:20:12]     "pilotErrorDiag": "",
[2025-11-27 11:20:12]  *** Listing of results directory ***
[2025-11-27 11:20:12] total 1336388
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 11:20:12] -rwx------. 1 boincer umatlas     36292 Nov 25 02:41 runpilot2-wrapper.sh
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:41 queuedata.json
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:20:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-27 11:20:12] -rw-r--r--. 2 boincer umatlas 409341691 Nov 26 00:10 EVNT.47483658._002135.pool.root.1
[2025-11-27 11:20:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 11:20:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-27 11:20:12] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:10 input.tar.gz
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 00:10 pandaJob.out
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas        57 Nov 26 00:10 setup.sh.local
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas    991877 Nov 26 00:12 agis_schedconf.cvmfs.json
[2025-11-27 11:20:12] drwx------. 5 boincer umatlas      4096 Nov 26 00:12 pilot3
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:04 boinc_task_state.xml
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 11:12 init_data.xml
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas 918475066 Nov 27 11:18 HITS.47556161._001181.pool.root.1
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas      1059 Nov 27 11:19 memory_monitor_summary.json
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas   2979192 Nov 27 11:19 log.47556161._001181.job.log.tgz.1
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas        95 Nov 27 11:19 pilot_heartbeat.json
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas      8621 Nov 27 11:19 heartbeat.json
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:20 boinc_mmap_file
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:20 wrapper_checkpoint.txt
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas       823 Nov 27 11:20 pilotlog.txt
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas  15384285 Nov 27 11:20 log.47556161._001181.job.log.1
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas       353 Nov 27 11:20 output.list
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:20 runtime_log
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas  18380800 Nov 27 11:20 result.tar.gz
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas       665 Nov 27 11:20 VhZKDmDr2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJFMKDmLTOyJn.diag
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 11:20 runtime_log.err
[2025-11-27 11:20:12] -rw-r--r--. 1 boincer umatlas     21355 Nov 27 11:20 stderr.txt
[2025-11-27 11:20:12] HITS file was successfully produced:
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas 918475066 Nov 27 11:18 shared/HITS.pool.root.1
[2025-11-27 11:20:12]  *** Contents of shared directory: ***
[2025-11-27 11:20:12] total 1315256
[2025-11-27 11:20:12] -rw-r--r--. 2 boincer umatlas 409341691 Nov 26 00:10 ATLAS.root_0
[2025-11-27 11:20:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 11:20:12] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:10 input.tar.gz
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas 918475066 Nov 27 11:18 HITS.pool.root.1
[2025-11-27 11:20:12] -rw-------. 1 boincer umatlas  18380800 Nov 27 11:20 result.tar.gz
11:20:13 (3840332): run_atlas exited; CPU time 267342.338074
11:20:13 (3840332): called boinc_finish(0)

</stderr_txt>
]]>

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