Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:57 (368467): wrapper (7.7.26015): starting
00:12:57 (368467): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:57] Arguments: --nthreads 8
[2025-11-26 00:12:57] Threads: 8
[2025-11-26 00:12:57] Checking for CVMFS
[2025-11-26 00:12:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:59] 2.13.3.0 7030 4933 227916 153310 3 79 25096797 32935937 59358 16776704 0 40213385 99.717 31239951 32394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:12:59] CVMFS is ok
[2025-11-26 00:12:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:59] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:59] Checking for apptainer binary...
[2025-11-26 00:12:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:59] Running /usr/bin/apptainer --version
[2025-11-26 00:12:59] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:59] lc-10-10.aglt2.org
[2025-11-26 00:12:59] apptainer works
[2025-11-26 00:13:00] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:13:00] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:13:00] Starting ATLAS job with PandaID=6896242935
[2025-11-26 00:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:23:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:23:38] 2025-11-27 03:22:37,408 | INFO     | time since job start (79713s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:39,415 | INFO     | time since job start (79715s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:39,800 | INFO     | monitor loop #4004: job 0:6896242935 is in state 'finished'
[2025-11-26 22:23:38] 2025-11-27 03:22:39,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:23:38] 2025-11-27 03:22:41,426 | INFO     | time since job start (79717s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:42,309 | INFO     | monitor loop #4005: job 0:6896242935 is in state 'finished'
[2025-11-26 22:23:38] 2025-11-27 03:22:42,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:23:38] 2025-11-27 03:22:43,437 | INFO     | time since job start (79719s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:44,823 | INFO     | monitor loop #4006: job 0:6896242935 is in state 'finished'
[2025-11-26 22:23:38] 2025-11-27 03:22:44,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:23:38] 2025-11-27 03:22:45,444 | INFO     | time since job start (79721s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:47,329 | INFO     | monitor loop #4007: job 0:6896242935 is in state 'finished'
[2025-11-26 22:23:38] 2025-11-27 03:22:47,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:23:38] 2025-11-27 03:22:47,450 | INFO     | time since job start (79723s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:49,457 | INFO     | time since job start (79725s) is within the limit (172800.0s)
[2025-11-26 22:23:38] 2025-11-27 03:22:49,839 | INFO     | monitor loop #4008: job 0:6896242935 is in state 'finished'
[2025-11-26 22:23:38] 2025-11-27 03:22:49,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,463 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 22:23:38] 2025-11-27 03:22:50,477 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2763.739416666667
[2025-11-26 22:23:38] 2025-11-27 03:22:50,510 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6896242935/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,511 | INFO     | extracted standard info from prmon json
[2025-11-26 22:23:38] 2025-11-27 03:22:50,511 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:23:38] 2025-11-27 03:22:50,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:23:38] 2025-11-27 03:22:50,549 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:23:38] 2025-11-27 03:22:50,555 | INFO     | sum of square deviations: 687533189286.4833
[2025-11-26 22:23:38] 2025-11-27 03:22:50,629 | INFO     | sum of deviations: 2477092776439.9683
[2025-11-26 22:23:38] 2025-11-27 03:22:50,630 | INFO     | mean x: 1764173948.3259203
[2025-11-26 22:23:38] 2025-11-27 03:22:50,630 | INFO     | mean y: 2830102.237730061
[2025-11-26 22:23:38] 2025-11-27 03:22:50,630 | INFO     | intersect: -6353259482.785636
[2025-11-26 22:23:38] 2025-11-27 03:22:50,634 | INFO     | chi2: 20.5455119470146
[2025-11-26 22:23:38] 2025-11-27 03:22:50,640 | INFO     | sum of square deviations: 679655144494.7491
[2025-11-26 22:23:38] 2025-11-27 03:22:50,707 | INFO     | sum of deviations: 2901683381463.955
[2025-11-26 22:23:38] 2025-11-27 03:22:50,707 | INFO     | mean x: 1764173795.8329484
[2025-11-26 22:23:38] 2025-11-27 03:22:50,708 | INFO     | mean y: 2838319.234795997
[2025-11-26 22:23:38] 2025-11-27 03:22:50,708 | INFO     | intersect: -7529031080.780024
[2025-11-26 22:23:38] 2025-11-27 03:22:50,709 | INFO     | chi2: 17.362865023278633
[2025-11-26 22:23:38] 2025-11-27 03:22:50,709 | INFO     | current chi2=17.362865023278633 (change=15.490716084095563 %)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,710 | INFO     | right removable region: 1298
[2025-11-26 22:23:38] 2025-11-27 03:22:50,711 | INFO     | sum of square deviations: 679653692084.7511
[2025-11-26 22:23:38] 2025-11-27 03:22:50,747 | INFO     | sum of deviations: 1985730055604.9722
[2025-11-26 22:23:38] 2025-11-27 03:22:50,747 | INFO     | mean x: 1764174100.8329484
[2025-11-26 22:23:38] 2025-11-27 03:22:50,747 | INFO     | mean y: 2839610.2717474983
[2025-11-26 22:23:38] 2025-11-27 03:22:50,748 | INFO     | intersect: -5151511165.927708
[2025-11-26 22:23:38] 2025-11-27 03:22:50,749 | INFO     | chi2: 16.769376332923446
[2025-11-26 22:23:38] 2025-11-27 03:22:50,749 | INFO     | current chi2=16.769376332923446 (change=18.3793697807557 %)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,749 | INFO     | left removable region: 10
[2025-11-26 22:23:38] 2025-11-27 03:22:50,751 | INFO     | sum of square deviations: 662532891160.4772
[2025-11-26 22:23:38] 2025-11-27 03:22:50,787 | INFO     | sum of deviations: 2075660020441.7668
[2025-11-26 22:23:38] 2025-11-27 03:22:50,787 | INFO     | mean x: 1764174070.3486025
[2025-11-26 22:23:38] 2025-11-27 03:22:50,787 | INFO     | mean y: 2857532.316770186
[2025-11-26 22:23:38] 2025-11-27 03:22:50,787 | INFO     | intersect: -5524151972.839489
[2025-11-26 22:23:38] 2025-11-27 03:22:50,789 | INFO     | chi2: 10.410232407261297
[2025-11-26 22:23:38] 2025-11-27 03:22:50,789 | INFO     | current memory leak: 3.13 B/s (using 1288 data points, chi2=10.41)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,790 | INFO     | could have reported an average CPU frequency of 2734 MHz (47 samples)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | ..............................
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . Timing measurements:
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . get job = 0 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . initial setup = 4 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . payload setup = 47 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . stage-in = 0 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . payload execution = 79555 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . stage-out = 8 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | . log creation = 2 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,791 | INFO     | ..............................
[2025-11-26 22:23:38] 2025-11-27 03:22:50,993 | INFO     | 
[2025-11-26 22:23:38] 2025-11-27 03:22:50,993 | INFO     | job summary report
[2025-11-26 22:23:38] 2025-11-27 03:22:50,993 | INFO     | --------------------------------------------------
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | PanDA job id: 6896242935
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | task id: 47556185
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | errors: (none)
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | pilot state: finished 
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | transexitcode: 0
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | exeerrorcode: 0
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | exeerrordiag: 
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | exitcode: 0
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | exitmsg: OK
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | cpuconsumptiontime: 262727 s
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | nevents: 1000
[2025-11-26 22:23:38] 2025-11-27 03:22:50,994 | INFO     | neventsw: 0
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | pid: 415745
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | pgrp: 415745
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | corecount: 8
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | event service: False
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | sizes: {0: 2283476, 1: 2284162, 2: 2284361, 3: 2284389, 14: 2284389, 25: 2284417, 34: 2284835, 36: 2284863, 79608: 2345129, 79609: 2345128, 79619: 2354180, 79622: 
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | --------------------------------------------------
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | 
[2025-11-26 22:23:38] 2025-11-27 03:22:50,995 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,062 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:23:38] 2025-11-27 03:22:51,063 | INFO     | job 6896242935 has completed (purged errors)
[2025-11-26 22:23:38] 2025-11-27 03:22:51,063 | INFO     | overall cleanup function is called
[2025-11-26 22:23:38] 2025-11-27 03:22:52,081 | INFO     | --- collectZombieJob: --- 10, [415745]
[2025-11-26 22:23:38] 2025-11-27 03:22:52,082 | INFO     | zombie collector waiting for pid 415745
[2025-11-26 22:23:38] 2025-11-27 03:22:52,082 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:23:38] 2025-11-27 03:22:52,082 | INFO     | collected zombie processes
[2025-11-26 22:23:38] 2025-11-27 03:22:52,082 | INFO     | will attempt to kill all subprocesses of pid=415745
[2025-11-26 22:23:38] 2025-11-27 03:22:53,998 | INFO     | process IDs to be killed: [415745] (in reverse order)
[2025-11-26 22:23:38] 2025-11-27 03:22:54,823 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:23:38] 2025-11-27 03:22:54,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:23:38] 2025-11-27 03:22:54,881 | INFO     | did not find any defunct processes belonging to 415745
[2025-11-26 22:23:38] 2025-11-27 03:22:55,030 | INFO     | did not find any defunct processes belonging to 415745
[2025-11-26 22:23:38] 2025-11-27 03:22:55,039 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:23:38] 2025-11-27 03:22:55,040 | INFO     | ready for new job
[2025-11-26 22:23:38] 2025-11-27 03:22:55,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:23:38] 2025-11-27 03:22:55,056 | INFO     | ***************************************
[2025-11-26 22:23:38] 2025-11-27 03:22:55,056 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:23:38] 2025-11-27 03:22:55,056 | INFO     | ***************************************
[2025-11-26 22:23:38] 2025-11-27 03:22:55,056 | INFO     | 
[2025-11-26 22:23:38] 2025-11-27 03:22:55,072 | INFO     | architecture information:
[2025-11-26 22:23:38] 2025-11-27 03:22:55,085 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:23:38] 2025-11-27 03:22:55,159 | INFO     | cat /etc/os-release:
[2025-11-26 22:23:38] NAME="CentOS Linux"
[2025-11-26 22:23:38] VERSION="7 (Core)"
[2025-11-26 22:23:38] ID="centos"
[2025-11-26 22:23:38] ID_LIKE="rhel fedora"
[2025-11-26 22:23:38] VERSION_ID="7"
[2025-11-26 22:23:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:23:38] ANSI_COLOR="0;31"
[2025-11-26 22:23:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:23:38] HOME_URL="https://www.centos.org/"
[2025-11-26 22:23:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:23:38] 
[2025-11-26 22:23:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:23:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:23:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:23:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:23:38] 
[2025-11-26 22:23:38] 2025-11-27 03:22:55,159 | INFO     | ***************************************
[2025-11-26 22:23:38] 2025-11-27 03:22:55,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-11-26 22:23:38] 2025-11-27 03:22:55,739 | INFO     | sufficient remaining disk space (88682266624 B)
[2025-11-26 22:23:38] 2025-11-27 03:22:55,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:23:38] 2025-11-27 03:22:55,739 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:23:38] 2025-11-27 03:22:55,739 | INFO     | update_server=False
[2025-11-26 22:23:38] 2025-11-27 03:22:55,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:23:38] 2025-11-27 03:22:55,888 | INFO     | all payload control threads have been joined
[2025-11-26 22:23:38] 2025-11-27 03:22:55,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:23:38] 2025-11-27 03:22:55,911 | INFO     | aborting loop
[2025-11-26 22:23:38] 2025-11-27 03:22:56,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:23:38] 2025-11-27 03:22:56,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:23:38] 2025-11-27 03:22:56,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:23:38] 2025-11-27 03:22:56,662 | INFO     | all data control threads have been joined
[2025-11-26 22:23:38] 2025-11-27 03:22:56,746 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:56,890 | INFO     | all job control threads have been joined
[2025-11-26 22:23:38] 2025-11-27 03:22:56,898 | INFO     | [payload] control thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:56,916 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:56,995 | INFO     | [job] validate thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,032 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,033 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,044 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,514 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,668 | INFO     | [data] control thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,896 | INFO     | [job] control thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:57,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:58,161 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:58,186 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:58,212 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:22:58,261 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:23:00,163 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:23:38] 2025-11-27 03:23:24,941 | INFO     | PID=378912 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 22:23:38] 2025-11-27 03:23:24,941 | INFO     | .. there are 101 such processes running
[2025-11-26 22:23:38] 2025-11-27 03:23:24,942 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:23:38] 2025-11-27 03:23:24,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:23:38] 2025-11-27 03:23:24,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:23:38] 2025-11-27 03:23:31,063 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:23:38] 2025-11-27 03:23:31,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140482497328960)>', '<ExcThread(monitor, started 140481862297344)>']
[2025-11-26 22:23:38] 2025-11-27 03:23:31,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:23:38] 2025-11-27 03:23:31,984 | INFO     | [monitor] control thread has ended
[2025-11-26 22:23:38] 2025-11-27 03:23:36,809 | INFO     | all workflow threads have been joined
[2025-11-26 22:23:38] 2025-11-27 03:23:36,809 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:23:38] 2025-11-27 03:23:36,810 | INFO     | traces error code: 0
[2025-11-26 22:23:38] 2025-11-27 03:23:36,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:23:38] 2025-11-27 03:23:37,616 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:23:38] 2025-11-27 03:23:37,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:23:38] 2025-11-27 03:23:37,631 [wrapper] pilotpid: 378912
[2025-11-26 22:23:38] 2025-11-27 03:23:37,660 [wrapper] Pilot exit status: 0
[2025-11-26 22:23:38] 2025-11-27 03:23:37,793 [wrapper] pandaids: 6896242935
[2025-11-26 22:23:38] 2025-11-27 03:23:38,172 [wrapper] cleanup supervisor_pilot 1790969 378913
[2025-11-26 22:23:38] 2025-11-27 03:23:38,190 [wrapper] Test setup, not cleaning
[2025-11-26 22:23:38] 2025-11-27 03:23:38,211 [wrapper] apfmon messages muted
[2025-11-26 22:23:38] 2025-11-27 03:23:38,230 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:23:38] 2025-11-27 03:23:38,248 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:23:38]  *** Error codes and diagnostics ***
[2025-11-26 22:23:38]     "exeErrorCode": 0,
[2025-11-26 22:23:38]     "exeErrorDiag": "",
[2025-11-26 22:23:38]     "pilotErrorCode": 0,
[2025-11-26 22:23:38]     "pilotErrorDiag": "",
[2025-11-26 22:23:38]  *** Listing of results directory ***
[2025-11-26 22:23:38] total 1317576
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 15:42 queuedata.json
[2025-11-26 22:23:38] -rwx------. 1 boincer umatlas     36292 Nov 24 15:44 runpilot2-wrapper.sh
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:23:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-26 22:23:38] -rw-r--r--. 2 boincer umatlas 408886875 Nov 26 00:12 EVNT.47483658._004244.pool.root.1
[2025-11-26 22:23:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-26 22:23:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-26 22:23:38] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:12 input.tar.gz
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas      2780 Nov 26 00:12 pandaJob.out
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas        57 Nov 26 00:13 setup.sh.local
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas    991877 Nov 26 00:13 agis_schedconf.cvmfs.json
[2025-11-26 22:23:38] drwx------. 5 boincer umatlas      4096 Nov 26 00:14 pilot3
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:55 boinc_task_state.xml
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas      6885 Nov 26 22:19 init_data.xml
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas 913697767 Nov 26 22:20 HITS.47556185._000071.pool.root.1
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas      1072 Nov 26 22:21 memory_monitor_summary.json
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:22 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas   2294973 Nov 26 22:22 log.47556185._000071.job.log.tgz.1
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas        95 Nov 26 22:22 pilot_heartbeat.json
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas      8624 Nov 26 22:22 heartbeat.json
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas      4825 Nov 26 22:23 pilotlog.txt
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:23 wrapper_checkpoint.txt
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas   9058228 Nov 26 22:23 log.47556185._000071.job.log.1
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas       353 Nov 26 22:23 output.list
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:23 runtime_log
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas  11376640 Nov 26 22:23 result.tar.gz
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas      9361 Nov 26 22:23 runtime_log.err
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas       660 Nov 26 22:23 hEsNDmFbsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeCJKDmJS9znm.diag
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas      2259 Nov 26 22:23 stderr.txt
[2025-11-26 22:23:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:23 boinc_mmap_file
[2025-11-26 22:23:38] HITS file was successfully produced:
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas 913697767 Nov 26 22:20 shared/HITS.pool.root.1
[2025-11-26 22:23:38]  *** Contents of shared directory: ***
[2025-11-26 22:23:38] total 1303304
[2025-11-26 22:23:38] -rw-r--r--. 2 boincer umatlas 408886875 Nov 26 00:12 ATLAS.root_0
[2025-11-26 22:23:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-26 22:23:38] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:12 input.tar.gz
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas 913697767 Nov 26 22:20 HITS.pool.root.1
[2025-11-26 22:23:38] -rw-------. 1 boincer umatlas  11376640 Nov 26 22:23 result.tar.gz
22:23:40 (368467): run_atlas exited; CPU time 267412.372962
22:23:40 (368467): called boinc_finish(0)

</stderr_txt>
]]>

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