Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:58 (3801736): wrapper (7.7.26015): starting
00:09:58 (3801736): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:09:58] Arguments: --nthreads 9
[2025-11-26 00:09:58] Threads: 9
[2025-11-26 00:09:58] Checking for CVMFS
[2025-11-26 00:09:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:09:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:09:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:09:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:09:59] 2.13.3.0 12161 29612 323236 153310 3 230 33522231 40960001 17292 16776704 0 77014936 99.543 91492799 38111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:09:59] CVMFS is ok
[2025-11-26 00:09:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:09:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:09:59] Further information can be found at the LHC@home message board.
[2025-11-26 00:09:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:09:59] Checking for apptainer binary...
[2025-11-26 00:09:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:09:59] Running /usr/bin/apptainer --version
[2025-11-26 00:09:59] apptainer version 1.4.4-1.el9
[2025-11-26 00:09:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:00] c6-5-7-1.aglt2.org
[2025-11-26 00:10:00] apptainer works
[2025-11-26 00:10:00] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:00] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:00] Starting ATLAS job with PandaID=6896716163
[2025-11-26 00:10:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:35:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:35:19] 2025-11-27 03:34:44,831 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:35:19] 2025-11-27 03:34:44,832 | INFO     | sum of square deviations: 714573092975.8383
[2025-11-26 22:35:19] 2025-11-27 03:34:44,863 | INFO     | sum of deviations: 5190261901397.317
[2025-11-26 22:35:19] 2025-11-27 03:34:44,863 | INFO     | mean x: 1764174199.2006056
[2025-11-26 22:35:19] 2025-11-27 03:34:44,863 | INFO     | mean y: 3039013.361090083
[2025-11-26 22:35:19] 2025-11-27 03:34:44,863 | INFO     | intersect: -12810942122.433836
[2025-11-26 22:35:19] 2025-11-27 03:34:44,864 | INFO     | chi2: 9.012077366876648
[2025-11-26 22:35:19] 2025-11-27 03:34:44,865 | INFO     | sum of square deviations: 706489653382.8715
[2025-11-26 22:35:19] 2025-11-27 03:34:44,889 | INFO     | sum of deviations: 5669856043392.582
[2025-11-26 22:35:19] 2025-11-27 03:34:44,889 | INFO     | mean x: 1764174046.7241642
[2025-11-26 22:35:19] 2025-11-27 03:34:44,889 | INFO     | mean y: 3048058.987841945
[2025-11-26 22:35:19] 2025-11-27 03:34:44,889 | INFO     | intersect: -14155139300.897787
[2025-11-26 22:35:19] 2025-11-27 03:34:44,891 | INFO     | chi2: 5.684777347803297
[2025-11-26 22:35:19] 2025-11-27 03:34:44,891 | INFO     | current chi2=5.684777347803297 (change=36.92045555781227 %)
[2025-11-26 22:35:19] 2025-11-27 03:34:44,892 | INFO     | sum of square deviations: 698467344217.9263
[2025-11-26 22:35:19] 2025-11-27 03:34:44,921 | INFO     | sum of deviations: 6002677244397.278
[2025-11-26 22:35:19] 2025-11-27 03:34:44,922 | INFO     | mean x: 1764173894.2471397
[2025-11-26 22:35:19] 2025-11-27 03:34:44,922 | INFO     | mean y: 3054377.406559878
[2025-11-26 22:35:19] 2025-11-27 03:34:44,922 | INFO     | intersect: -15158379550.495104
[2025-11-26 22:35:19] 2025-11-27 03:34:44,923 | INFO     | chi2: 3.5391311565466577
[2025-11-26 22:35:19] 2025-11-27 03:34:44,923 | INFO     | current chi2=3.5391311565466577 (change=37.74371554034137 %)
[2025-11-26 22:35:19] 2025-11-27 03:34:44,924 | INFO     | sum of square deviations: 690504172411.1157
[2025-11-26 22:35:19] 2025-11-27 03:34:44,967 | INFO     | sum of deviations: 5957166588483.208
[2025-11-26 22:35:19] 2025-11-27 03:34:44,971 | INFO     | mean x: 1764173741.7526798
[2025-11-26 22:35:19] 2025-11-27 03:34:44,971 | INFO     | mean y: 3053505.440275651
[2025-11-26 22:35:19] 2025-11-27 03:34:44,971 | INFO     | intersect: -15216951370.05711
[2025-11-26 22:35:19] 2025-11-27 03:34:44,972 | INFO     | chi2: 3.532189034424794
[2025-11-26 22:35:19] 2025-11-27 03:34:44,973 | INFO     | current chi2=3.532189034424794 (change=0.19615328776449137 %)
[2025-11-26 22:35:19] 2025-11-27 03:34:44,973 | INFO     | right removable region: 1305
[2025-11-26 22:35:19] 2025-11-27 03:34:44,974 | INFO     | sum of square deviations: 706484656872.8721
[2025-11-26 22:35:19] 2025-11-27 03:34:45,008 | INFO     | sum of deviations: 4708166069493.249
[2025-11-26 22:35:19] 2025-11-27 03:34:45,009 | INFO     | mean x: 1764174351.7241642
[2025-11-26 22:35:19] 2025-11-27 03:34:45,009 | INFO     | mean y: 3048100.7940729484
[2025-11-26 22:35:19] 2025-11-27 03:34:45,009 | INFO     | intersect: -11753790130.092773
[2025-11-26 22:35:19] 2025-11-27 03:34:45,010 | INFO     | chi2: 5.980639485228531
[2025-11-26 22:35:19] 2025-11-27 03:34:45,011 | INFO     | current chi2=5.980639485228531 (change=33.637503965400754 %)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,012 | INFO     | sum of square deviations: 698460797993.9099
[2025-11-26 22:35:19] 2025-11-27 03:34:45,100 | INFO     | sum of deviations: 4537560324190.821
[2025-11-26 22:35:19] 2025-11-27 03:34:45,100 | INFO     | mean x: 1764174504.2158659
[2025-11-26 22:35:19] 2025-11-27 03:34:45,100 | INFO     | mean y: 3051340.7780320365
[2025-11-26 22:35:19] 2025-11-27 03:34:45,101 | INFO     | intersect: -11457932952.500406
[2025-11-26 22:35:19] 2025-11-27 03:34:45,102 | INFO     | chi2: 5.695323818399875
[2025-11-26 22:35:19] 2025-11-27 03:34:45,102 | INFO     | current chi2=5.695323818399875 (change=4.770654836048082 %)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,102 | INFO     | left removable region: 20
[2025-11-26 22:35:19] 2025-11-27 03:34:45,124 | INFO     | sum of square deviations: 657718860555.0238
[2025-11-26 22:35:19] 2025-11-27 03:34:45,179 | INFO     | sum of deviations: 5090214432839.719
[2025-11-26 22:35:19] 2025-11-27 03:34:45,180 | INFO     | mean x: 1764174321.2350194
[2025-11-26 22:35:19] 2025-11-27 03:34:45,180 | INFO     | mean y: 3069955.206225681
[2025-11-26 22:35:19] 2025-11-27 03:34:45,180 | INFO     | intersect: -13650218905.049065
[2025-11-26 22:35:19] 2025-11-27 03:34:45,182 | INFO     | chi2: 0.10923331714207606
[2025-11-26 22:35:19] 2025-11-27 03:34:45,182 | INFO     | current memory leak: 7.74 B/s (using 1285 data points, chi2=0.11)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,184 | INFO     | could have reported an average CPU frequency of 2962 MHz (47 samples)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,193 | INFO     | ..............................
[2025-11-26 22:35:19] 2025-11-27 03:34:45,193 | INFO     | . Timing measurements:
[2025-11-26 22:35:19] 2025-11-27 03:34:45,193 | INFO     | . get job = 0 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,193 | INFO     | . initial setup = 3 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,193 | INFO     | . payload setup = 33 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,194 | INFO     | . stage-in = 0 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,194 | INFO     | . payload execution = 80547 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,194 | INFO     | . stage-out = 4 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,194 | INFO     | . log creation = 1 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,194 | INFO     | ..............................
[2025-11-26 22:35:19] 2025-11-27 03:34:45,464 | INFO     | 
[2025-11-26 22:35:19] 2025-11-27 03:34:45,464 | INFO     | job summary report
[2025-11-26 22:35:19] 2025-11-27 03:34:45,464 | INFO     | --------------------------------------------------
[2025-11-26 22:35:19] 2025-11-27 03:34:45,464 | INFO     | PanDA job id: 6896716163
[2025-11-26 22:35:19] 2025-11-27 03:34:45,464 | INFO     | task id: 47556161
[2025-11-26 22:35:19] 2025-11-27 03:34:45,464 | INFO     | errors: (none)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | pilot state: finished 
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | transexitcode: 0
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | exeerrorcode: 0
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | exeerrordiag: 
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | exitcode: 0
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | exitmsg: OK
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | cpuconsumptiontime: 244639 s
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | nevents: 1000
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | neventsw: 0
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | pid: 3834653
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | pgrp: 3834653
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | corecount: 9
[2025-11-26 22:35:19] 2025-11-27 03:34:45,465 | INFO     | event service: False
[2025-11-26 22:35:19] 2025-11-27 03:34:45,466 | INFO     | sizes: {0: 2283435, 1: 2284120, 2: 2284319, 13: 2284319, 22: 2284637, 24: 2284665, 80585: 2347262, 80590: 2356312, 80607: 2356502}
[2025-11-26 22:35:19] 2025-11-27 03:34:45,466 | INFO     | --------------------------------------------------
[2025-11-26 22:35:19] 2025-11-27 03:34:45,466 | INFO     | 
[2025-11-26 22:35:19] 2025-11-27 03:34:45,466 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 22:35:19] 2025-11-27 03:34:45,737 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,737 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,738 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:35:19] 2025-11-27 03:34:45,739 | INFO     | job 6896716163 has completed (purged errors)
[2025-11-26 22:35:19] 2025-11-27 03:34:45,739 | INFO     | overall cleanup function is called
[2025-11-26 22:35:19] 2025-11-27 03:34:45,952 | INFO     | PID=3811260 has CPU usage=16.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 22:35:19] 2025-11-27 03:34:45,952 | INFO     | .. there are 24 such processes running
[2025-11-26 22:35:19] 2025-11-27 03:34:46,762 | INFO     | --- collectZombieJob: --- 10, [3834653]
[2025-11-26 22:35:19] 2025-11-27 03:34:46,762 | INFO     | zombie collector waiting for pid 3834653
[2025-11-26 22:35:19] 2025-11-27 03:34:46,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:35:19] 2025-11-27 03:34:46,762 | INFO     | collected zombie processes
[2025-11-26 22:35:19] 2025-11-27 03:34:46,762 | INFO     | will attempt to kill all subprocesses of pid=3834653
[2025-11-26 22:35:19] 2025-11-27 03:34:47,189 | INFO     | process IDs to be killed: [3834653] (in reverse order)
[2025-11-26 22:35:19] 2025-11-27 03:34:47,320 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:35:19] 2025-11-27 03:34:47,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:35:19] 2025-11-27 03:34:47,368 | INFO     | did not find any defunct processes belonging to 3834653
[2025-11-26 22:35:19] 2025-11-27 03:34:47,381 | INFO     | did not find any defunct processes belonging to 3834653
[2025-11-26 22:35:19] 2025-11-27 03:34:47,383 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:35:19] 2025-11-27 03:34:47,383 | INFO     | ready for new job
[2025-11-26 22:35:19] 2025-11-27 03:34:47,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:35:19] 2025-11-27 03:34:47,388 | INFO     | ***************************************
[2025-11-26 22:35:19] 2025-11-27 03:34:47,388 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:35:19] 2025-11-27 03:34:47,388 | INFO     | ***************************************
[2025-11-26 22:35:19] 2025-11-27 03:34:47,389 | INFO     | 
[2025-11-26 22:35:19] 2025-11-27 03:34:47,391 | INFO     | architecture information:
[2025-11-26 22:35:19] 2025-11-27 03:34:47,408 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:35:19] 2025-11-27 03:34:47,461 | INFO     | cat /etc/os-release:
[2025-11-26 22:35:19] NAME="CentOS Linux"
[2025-11-26 22:35:19] VERSION="7 (Core)"
[2025-11-26 22:35:19] ID="centos"
[2025-11-26 22:35:19] ID_LIKE="rhel fedora"
[2025-11-26 22:35:19] VERSION_ID="7"
[2025-11-26 22:35:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:35:19] ANSI_COLOR="0;31"
[2025-11-26 22:35:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:35:19] HOME_URL="https://www.centos.org/"
[2025-11-26 22:35:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:35:19] 
[2025-11-26 22:35:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:35:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:35:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:35:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:35:19] 
[2025-11-26 22:35:19] 2025-11-27 03:34:47,461 | INFO     | ***************************************
[2025-11-26 22:35:19] 2025-11-27 03:34:47,966 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 22:35:19] 2025-11-27 03:34:48,061 | INFO     | sufficient remaining disk space (69725061120 B)
[2025-11-26 22:35:19] 2025-11-27 03:34:48,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:35:19] 2025-11-27 03:34:48,065 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:35:19] 2025-11-27 03:34:48,065 | INFO     | update_server=False
[2025-11-26 22:35:19] 2025-11-27 03:34:48,065 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:35:19] 2025-11-27 03:34:48,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:35:19] 2025-11-27 03:34:48,263 | INFO     | all data control threads have been joined
[2025-11-26 22:35:19] 2025-11-27 03:34:48,545 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:35:19] 2025-11-27 03:34:48,651 | INFO     | all payload control threads have been joined
[2025-11-26 22:35:19] 2025-11-27 03:34:48,708 | INFO     | all job control threads have been joined
[2025-11-26 22:35:19] 2025-11-27 03:34:49,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:35:19] 2025-11-27 03:34:49,056 | INFO     | aborting loop
[2025-11-26 22:35:19] 2025-11-27 03:34:49,071 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,242 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,269 | INFO     | [data] control thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,657 | INFO     | [payload] control thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,714 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,718 | INFO     | [job] control thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,809 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,866 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,887 | INFO     | [job] validate thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:49,978 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:50,062 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:50,265 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:50,341 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:50,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:35:19] 2025-11-27 03:34:50,552 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:51,485 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:34:52,086 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:35:19] 2025-11-27 03:35:04,080 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:35:19] 2025-11-27 03:35:04,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219942356800)>', '<ExcThread(monitor, started 140219449853696)>']
[2025-11-26 22:35:19] 2025-11-27 03:35:09,915 | INFO     | all workflow threads have been joined
[2025-11-26 22:35:19] 2025-11-27 03:35:09,915 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:35:19] 2025-11-27 03:35:09,916 | INFO     | traces error code: 0
[2025-11-26 22:35:19] 2025-11-27 03:35:09,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:35:19] 2025-11-27 03:35:18,592 | INFO     | PID=3811260 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:35:19] 2025-11-27 03:35:18,593 | INFO     | .. there are 24 such processes running
[2025-11-26 22:35:19] 2025-11-27 03:35:18,593 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:35:19] 2025-11-27 03:35:18,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:35:19] 2025-11-27 03:35:18,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:35:19] 2025-11-27 03:35:18,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:35:19] 2025-11-27 03:35:18,593 | INFO     | [monitor] control thread has ended
[2025-11-26 22:35:19] 2025-11-27 03:35:18,775 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:35:19] 2025-11-27 03:35:18,779 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:35:19] 2025-11-27 03:35:18,788 [wrapper] pilotpid: 3811260
[2025-11-26 22:35:19] 2025-11-27 03:35:18,839 [wrapper] Pilot exit status: 0
[2025-11-26 22:35:19] 2025-11-27 03:35:18,871 [wrapper] pandaids: 6896716163
[2025-11-26 22:35:19] 2025-11-27 03:35:18,952 [wrapper] cleanup supervisor_pilot 3679641 3811261
[2025-11-26 22:35:19] 2025-11-27 03:35:18,956 [wrapper] Test setup, not cleaning
[2025-11-26 22:35:19] 2025-11-27 03:35:18,960 [wrapper] apfmon messages muted
[2025-11-26 22:35:19] 2025-11-27 03:35:18,963 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:35:19] 2025-11-27 03:35:18,967 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:35:19]  *** Error codes and diagnostics ***
[2025-11-26 22:35:19]     "exeErrorCode": 0,
[2025-11-26 22:35:19]     "exeErrorDiag": "",
[2025-11-26 22:35:19]     "pilotErrorCode": 0,
[2025-11-26 22:35:19]     "pilotErrorDiag": "",
[2025-11-26 22:35:19]  *** Listing of results directory ***
[2025-11-26 22:35:19] total 1329396
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-26 22:35:19] -rwx------. 1 boincer umatlas     36292 Nov 25 02:23 runpilot2-wrapper.sh
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:23 queuedata.json
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:35:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:09 run_atlas
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:09 job.xml
[2025-11-26 22:35:19] -rw-r--r--. 2 boincer umatlas 409909942 Nov 26 00:09 EVNT.47483658._002134.pool.root.1
[2025-11-26 22:35:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:09 start_atlas.sh
[2025-11-26 22:35:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:09 shared
[2025-11-26 22:35:19] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:09 input.tar.gz
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:09 boinc_lockfile
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:10 pandaJob.out
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas        57 Nov 26 00:10 setup.sh.local
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas    991877 Nov 26 00:10 agis_schedconf.cvmfs.json
[2025-11-26 22:35:19] drwx------. 5 boincer umatlas      4096 Nov 26 00:10 pilot3
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:23 boinc_task_state.xml
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas      6841 Nov 26 22:27 init_data.xml
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas 922179997 Nov 26 22:33 HITS.47556161._001177.pool.root.1
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas      1058 Nov 26 22:34 memory_monitor_summary.json
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas   2484483 Nov 26 22:34 log.47556161._001177.job.log.tgz.1
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas        95 Nov 26 22:34 pilot_heartbeat.json
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas      8618 Nov 26 22:34 heartbeat.json
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:35 boinc_mmap_file
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:35 wrapper_checkpoint.txt
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas       823 Nov 26 22:35 pilotlog.txt
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas  10160662 Nov 26 22:35 log.47556161._001177.job.log.1
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas       353 Nov 26 22:35 output.list
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:35 runtime_log
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas  12666880 Nov 26 22:35 result.tar.gz
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 22:35 runtime_log.err
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas       660 Nov 26 22:35 fr2KDmiZ2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFFMKDmw3Bfbm.diag
[2025-11-26 22:35:19] -rw-r--r--. 1 boincer umatlas     21254 Nov 26 22:35 stderr.txt
[2025-11-26 22:35:19] HITS file was successfully produced:
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas 922179997 Nov 26 22:33 shared/HITS.pool.root.1
[2025-11-26 22:35:19]  *** Contents of shared directory: ***
[2025-11-26 22:35:19] total 1313848
[2025-11-26 22:35:19] -rw-r--r--. 2 boincer umatlas 409909942 Nov 26 00:09 ATLAS.root_0
[2025-11-26 22:35:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:09 start_atlas.sh
[2025-11-26 22:35:19] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:09 input.tar.gz
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas 922179997 Nov 26 22:33 HITS.pool.root.1
[2025-11-26 22:35:19] -rw-------. 1 boincer umatlas  12666880 Nov 26 22:35 result.tar.gz
22:35:20 (3801736): run_atlas exited; CPU time 245763.970511
22:35:20 (3801736): called boinc_finish(0)

</stderr_txt>
]]>

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