Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:08 (3022720): wrapper (7.7.26015): starting
00:15:08 (3022720): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:15:08] Arguments: --nthreads 8
[2025-11-26 00:15:08] Threads: 8
[2025-11-26 00:15:08] Checking for CVMFS
[2025-11-26 00:15:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:15:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:15:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:15:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:15:11] 2.13.2.0 34200 33282 261860 153310 3 84 34397550 40960001 11244 16776704 0 30240324 99.674 22009923 32011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:15:11] CVMFS is ok
[2025-11-26 00:15:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:15:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:15:11] Further information can be found at the LHC@home message board.
[2025-11-26 00:15:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:15:11] Checking for apptainer binary...
[2025-11-26 00:15:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:15:11] Running /usr/bin/apptainer --version
[2025-11-26 00:15:11] apptainer version 1.4.4-1.el9
[2025-11-26 00:15:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:15:12] c-211-13.aglt2.org
[2025-11-26 00:15:12] apptainer works
[2025-11-26 00:15:12] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:15:12] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:15:12] Starting ATLAS job with PandaID=6896218901
[2025-11-26 00:15:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:08 (3022720): BOINC client no longer exists - exiting
00:20:08 (3022720): timer handler: client dead, exiting
00:28:35 (3067734): wrapper (7.7.26015): starting
00:28:35 (3067734): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:28:35] Arguments: --nthreads 8
[2025-11-26 00:28:35] Threads: 8
[2025-11-26 00:28:35] This job has been restarted, cleaning up previous attempt
[2025-11-26 00:28:35] Checking for CVMFS
[2025-11-26 00:28:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:28:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:28:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:28:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:28:35] 2.13.2.0 34200 33295 261316 153311 1 172 34418788 40960001 5977 16776704 0 30325634 99.675 22011218 32011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:28:35] CVMFS is ok
[2025-11-26 00:28:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:28:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:28:35] Further information can be found at the LHC@home message board.
[2025-11-26 00:28:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:28:35] Checking for apptainer binary...
[2025-11-26 00:28:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:28:35] Running /usr/bin/apptainer --version
[2025-11-26 00:28:35] apptainer version 1.4.4-1.el9
[2025-11-26 00:28:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:28:35] c-211-13.aglt2.org
[2025-11-26 00:28:35] apptainer works
[2025-11-26 00:28:35] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:28:35] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:28:35] Starting ATLAS job with PandaID=6896218901
[2025-11-26 00:28:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:20:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:20:38] 2025-11-27 14:05:18,362 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 15:20:38] 2025-11-27 14:05:18,371 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2626.5824999999995
[2025-11-27 15:20:38] 2025-11-27 14:05:18,381 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896218901/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:20:38] 2025-11-27 14:05:18,382 | INFO     | extracted standard info from prmon json
[2025-11-27 15:20:38] 2025-11-27 14:05:18,382 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:20:38] 2025-11-27 14:05:18,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:20:38] 2025-11-27 14:05:18,421 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:20:38] 2025-11-27 14:05:18,424 | INFO     | sum of square deviations: 2208082660711.3765
[2025-11-27 15:20:38] 2025-11-27 14:05:18,528 | INFO     | sum of deviations: 8189457022759.142
[2025-11-27 15:20:38] 2025-11-27 14:05:18,528 | INFO     | mean x: 1764193611.8393972
[2025-11-27 15:20:38] 2025-11-27 14:05:18,529 | INFO     | mean y: 2947333.9584199586
[2025-11-27 15:20:38] 2025-11-27 14:05:18,529 | INFO     | intersect: -6540189850.647854
[2025-11-27 15:20:38] 2025-11-27 14:05:18,532 | INFO     | chi2: 9.081341244211458
[2025-11-27 15:20:38] 2025-11-27 14:05:18,535 | INFO     | sum of square deviations: 2190913789541.3384
[2025-11-27 15:20:38] 2025-11-27 14:05:18,631 | INFO     | sum of deviations: 8844719959023.428
[2025-11-27 15:20:38] 2025-11-27 14:05:18,631 | INFO     | mean x: 1764193459.35852
[2025-11-27 15:20:38] 2025-11-27 14:05:18,631 | INFO     | mean y: 2953154.1360083376
[2025-11-27 15:20:38] 2025-11-27 14:05:18,631 | INFO     | intersect: -7119096638.993232
[2025-11-27 15:20:38] 2025-11-27 14:05:18,634 | INFO     | chi2: 5.9527057474126694
[2025-11-27 15:20:38] 2025-11-27 14:05:18,635 | INFO     | current chi2=5.9527057474126694 (change=34.451249134515386 %)
[2025-11-27 15:20:38] 2025-11-27 14:05:18,638 | INFO     | sum of square deviations: 2173834175857.39
[2025-11-27 15:20:38] 2025-11-27 14:05:18,704 | INFO     | time since job start (117392s) is within the limit (172800.0s)
[2025-11-27 15:20:38] 2025-11-27 14:05:18,749 | INFO     | sum of deviations: 9349136860911.246
[2025-11-27 15:20:38] 2025-11-27 14:05:18,750 | INFO     | mean x: 1764193306.877743
[2025-11-27 15:20:38] 2025-11-27 14:05:18,750 | INFO     | mean y: 2957654.8087774296
[2025-11-27 15:20:38] 2025-11-27 14:05:18,750 | INFO     | intersect: -7584412558.744092
[2025-11-27 15:20:38] 2025-11-27 14:05:18,753 | INFO     | chi2: 3.7578316660466733
[2025-11-27 15:20:38] 2025-11-27 14:05:18,754 | INFO     | current chi2=3.7578316660466733 (change=36.87187263237383 %)
[2025-11-27 15:20:38] 2025-11-27 14:05:18,757 | INFO     | sum of square deviations: 2156843353616.604
[2025-11-27 15:20:38] 2025-11-27 14:05:18,867 | INFO     | sum of deviations: 9568625805447.586
[2025-11-27 15:20:38] 2025-11-27 14:05:18,868 | INFO     | mean x: 1764193154.3960187
[2025-11-27 15:20:38] 2025-11-27 14:05:18,868 | INFO     | mean y: 2959624.048192771
[2025-11-27 15:20:38] 2025-11-27 14:05:18,868 | INFO     | intersect: -7823711754.122017
[2025-11-27 15:20:38] 2025-11-27 14:05:18,871 | INFO     | chi2: 3.2505578820117176
[2025-11-27 15:20:38] 2025-11-27 14:05:18,871 | INFO     | current chi2=3.2505578820117176 (change=13.499108771112667 %)
[2025-11-27 15:20:38] 2025-11-27 14:05:18,871 | INFO     | right removable region: 1908
[2025-11-27 15:20:38] 2025-11-27 14:05:18,874 | INFO     | sum of square deviations: 2190906112745.038
[2025-11-27 15:20:38] 2025-11-27 14:05:18,985 | INFO     | sum of deviations: 7640625725423.024
[2025-11-27 15:20:38] 2025-11-27 14:05:18,985 | INFO     | mean x: 1764193764.3543513
[2025-11-27 15:20:38] 2025-11-27 14:05:18,985 | INFO     | mean y: 2952204.205836373
[2025-11-27 15:20:38] 2025-11-27 14:05:18,986 | INFO     | intersect: -6149545240.63807
[2025-11-27 15:20:38] 2025-11-27 14:05:18,989 | INFO     | chi2: 6.884034438404838
[2025-11-27 15:20:38] 2025-11-27 14:05:18,989 | INFO     | current chi2=6.884034438404838 (change=24.195840093633812 %)
[2025-11-27 15:20:38] 2025-11-27 14:05:18,989 | INFO     | left removable region: 10
[2025-11-27 15:20:38] 2025-11-27 14:05:18,992 | INFO     | sum of square deviations: 2119765783827.682
[2025-11-27 15:20:38] 2025-11-27 14:05:19,121 | INFO     | sum of deviations: 8866673864820.87
[2025-11-27 15:20:38] 2025-11-27 14:05:19,121 | INFO     | mean x: 1764193428.907271
[2025-11-27 15:20:38] 2025-11-27 14:05:19,122 | INFO     | mean y: 2966589.379873551
[2025-11-27 15:20:38] 2025-11-27 14:05:19,122 | INFO     | intersect: -7376399512.253745
[2025-11-27 15:20:38] 2025-11-27 14:05:19,129 | INFO     | chi2: 0.8575755258665245
[2025-11-27 15:20:38] 2025-11-27 14:05:19,129 | INFO     | current memory leak: 4.18 B/s (using 1898 data points, chi2=0.86)
[2025-11-27 15:20:38] 2025-11-27 14:05:19,136 | INFO     | could have reported an average CPU frequency of 2656 MHz (67 samples)
[2025-11-27 15:20:38] 2025-11-27 14:05:19,136 | INFO     | ..............................
[2025-11-27 15:20:38] 2025-11-27 14:05:19,136 | INFO     | . Timing measurements:
[2025-11-27 15:20:38] 2025-11-27 14:05:19,136 | INFO     | . get job = 0 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,136 | INFO     | . initial setup = 1 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,137 | INFO     | . payload setup = 5 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,137 | INFO     | . stage-in = 0 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,137 | INFO     | . payload execution = 117349 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,137 | INFO     | . stage-out = 5 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,137 | INFO     | . log creation = 1 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,137 | INFO     | ..............................
[2025-11-27 15:20:38] 2025-11-27 14:05:19,330 | INFO     | 
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | job summary report
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | --------------------------------------------------
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | PanDA job id: 6896218901
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | task id: 47556161
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | errors: (none)
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:20:38] 2025-11-27 14:05:19,331 | INFO     | pilot state: finished 
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | transexitcode: 0
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | exeerrorcode: 0
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | exeerrordiag: 
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | exitcode: 0
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | exitmsg: OK
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | cpuconsumptiontime: 348123 s
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | nevents: 1000
[2025-11-27 15:20:38] 2025-11-27 14:05:19,332 | INFO     | neventsw: 0
[2025-11-27 15:20:38] 2025-11-27 14:05:19,333 | INFO     | pid: 3118735
[2025-11-27 15:20:38] 2025-11-27 14:05:19,333 | INFO     | pgrp: 3118735
[2025-11-27 15:20:38] 2025-11-27 14:05:19,333 | INFO     | corecount: 8
[2025-11-27 15:20:38] 2025-11-27 14:05:19,333 | INFO     | event service: False
[2025-11-27 15:20:38] 2025-11-27 14:05:19,337 | INFO     | sizes: {0: 2284086, 1: 2284341, 5: 2284603, 12: 2284659, 117359: 2364721, 117360: 2364720, 117366: 2373982, 117377: 2374172}
[2025-11-27 15:20:38] 2025-11-27 14:05:19,338 | INFO     | --------------------------------------------------
[2025-11-27 15:20:38] 2025-11-27 14:05:19,338 | INFO     | 
[2025-11-27 15:20:38] 2025-11-27 14:05:19,338 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 15:20:38] 2025-11-27 14:05:19,536 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,536 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,536 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,536 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,536 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,537 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:20:38] 2025-11-27 14:05:19,538 | INFO     | job 6896218901 has completed (purged errors)
[2025-11-27 15:20:38] 2025-11-27 14:05:19,539 | INFO     | overall cleanup function is called
[2025-11-27 15:20:38] 2025-11-27 14:05:20,576 | INFO     | --- collectZombieJob: --- 10, [3118735]
[2025-11-27 15:20:38] 2025-11-27 14:05:20,577 | INFO     | zombie collector waiting for pid 3118735
[2025-11-27 15:20:38] 2025-11-27 14:05:20,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:20:38] 2025-11-27 14:05:20,577 | INFO     | collected zombie processes
[2025-11-27 15:20:38] 2025-11-27 14:05:20,577 | INFO     | will attempt to kill all subprocesses of pid=3118735
[2025-11-27 15:20:38] 2025-11-27 14:05:21,097 | INFO     | process IDs to be killed: [3118735] (in reverse order)
[2025-11-27 15:20:38] 2025-11-27 14:05:21,379 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:20:38] 2025-11-27 14:05:21,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:20:38] 2025-11-27 14:05:21,404 | INFO     | did not find any defunct processes belonging to 3118735
[2025-11-27 15:20:38] 2025-11-27 14:05:21,424 | INFO     | did not find any defunct processes belonging to 3118735
[2025-11-27 15:20:38] 2025-11-27 14:05:21,430 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:20:38] 2025-11-27 14:05:21,430 | INFO     | ready for new job
[2025-11-27 15:20:38] 2025-11-27 14:05:21,430 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:20:38] 2025-11-27 14:05:21,461 | INFO     | ***************************************
[2025-11-27 15:20:38] 2025-11-27 14:05:21,461 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:20:38] 2025-11-27 14:05:21,461 | INFO     | ***************************************
[2025-11-27 15:20:38] 2025-11-27 14:05:21,461 | INFO     | 
[2025-11-27 15:20:38] 2025-11-27 14:05:21,465 | INFO     | architecture information:
[2025-11-27 15:20:38] 2025-11-27 14:05:21,473 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:20:38] 2025-11-27 14:05:21,527 | INFO     | cat /etc/os-release:
[2025-11-27 15:20:38] NAME="CentOS Linux"
[2025-11-27 15:20:38] VERSION="7 (Core)"
[2025-11-27 15:20:38] ID="centos"
[2025-11-27 15:20:38] ID_LIKE="rhel fedora"
[2025-11-27 15:20:38] VERSION_ID="7"
[2025-11-27 15:20:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:20:38] ANSI_COLOR="0;31"
[2025-11-27 15:20:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:20:38] HOME_URL="https://www.centos.org/"
[2025-11-27 15:20:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:20:38] 
[2025-11-27 15:20:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:20:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:20:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:20:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:20:38] 
[2025-11-27 15:20:38] 2025-11-27 14:05:21,527 | INFO     | ***************************************
[2025-11-27 15:20:38] 2025-11-27 14:05:22,031 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 15:20:38] 2025-11-27 14:05:22,050 | INFO     | sufficient remaining disk space (57646514176 B)
[2025-11-27 15:20:38] 2025-11-27 14:05:22,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:20:38] 2025-11-27 14:05:22,050 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:20:38] 2025-11-27 14:05:22,051 | INFO     | update_server=False
[2025-11-27 15:20:38] 2025-11-27 14:05:22,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:20:38] 2025-11-27 14:05:22,172 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:20:38] 2025-11-27 14:05:22,173 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:20:38] 2025-11-27 14:05:22,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:20:38] 2025-11-27 14:05:22,173 | INFO     | will abort loop
[2025-11-27 15:20:38] 2025-11-27 14:05:22,607 | INFO     | all data control threads have been joined
[2025-11-27 15:20:38] 2025-11-27 14:05:22,892 | INFO     | all job control threads have been joined
[2025-11-27 15:20:38] 2025-11-27 14:05:23,056 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,159 | INFO     | all payload control threads have been joined
[2025-11-27 15:20:38] 2025-11-27 14:05:23,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:20:38] 2025-11-27 14:05:23,178 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,181 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,182 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,257 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:20:38] 2025-11-27 14:05:23,613 | INFO     | [data] control thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,846 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,871 | INFO     | [job] validate thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:23,898 | INFO     | [job] control thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:24,164 | INFO     | [payload] control thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:24,170 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:24,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:20:38] 2025-11-27 14:05:24,492 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:25,352 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:25,544 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:27,170 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:20:38] 2025-11-27 14:05:52,177 | INFO     | PID=3086210 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:20:38] 2025-11-27 14:05:52,177 | INFO     | .. there are 10 such processes running
[2025-11-27 15:20:38] 2025-11-27 14:05:52,178 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:20:38] 2025-11-27 14:05:52,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:20:38] 2025-11-27 14:05:52,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:20:38] 2025-11-27 14:06:21,738 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:20:38] 2025-11-27 14:06:23,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555052144448)>', '<ExcThread(monitor, started 140554339870464)>']
[2025-11-27 15:20:38] 2025-11-27 14:06:23,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:20:38] 2025-11-27 14:06:23,382 | INFO     | [monitor] control thread has ended
[2025-11-27 15:20:38] 2025-11-27 14:06:28,032 | INFO     | all workflow threads have been joined
[2025-11-27 15:20:38] 2025-11-27 14:06:28,032 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:20:38] 2025-11-27 14:06:28,033 | INFO     | traces error code: 0
[2025-11-27 15:20:38] 2025-11-27 14:06:28,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:20:38] 2025-11-27 14:06:28,269 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:20:38] 2025-11-27 14:06:28,272 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:20:38] 2025-11-27 14:06:28,276 [wrapper] pilotpid: 3086210
[2025-11-27 15:20:38] 2025-11-27 14:06:28,279 [wrapper] Pilot exit status: 0
[2025-11-27 15:20:38] 2025-11-27 14:06:28,320 [wrapper] pandaids: 6896218901 6896218901
[2025-11-27 15:20:38] 2025-11-27 14:06:28,374 [wrapper] cleanup supervisor_pilot 1990570 3086215
[2025-11-27 15:20:38] 2025-11-27 14:06:28,424 [wrapper] Test setup, not cleaning
[2025-11-27 15:20:38] 2025-11-27 14:06:28,472 [wrapper] apfmon messages muted
[2025-11-27 15:20:38] 2025-11-27 14:06:28,483 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:20:38] 2025-11-27 14:06:28,486 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:20:38]  *** Error codes and diagnostics ***
[2025-11-27 15:20:38]     "exeErrorCode": 0,
[2025-11-27 15:20:38]     "exeErrorDiag": "",
[2025-11-27 15:20:38]     "pilotErrorCode": 0,
[2025-11-27 15:20:38]     "pilotErrorDiag": "",
[2025-11-27 15:20:38]  *** Listing of results directory ***
[2025-11-27 15:20:38] total 1739400
[2025-11-27 15:20:38] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:37 queuedata.json
[2025-11-27 15:20:38] -rwx------. 1 boincer umatlas     36292 Nov 24 14:39 runpilot2-wrapper.sh
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:20:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:15 run_atlas
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:15 job.xml
[2025-11-27 15:20:38] -rw-r--r--. 3 boincer umatlas 411780370 Nov 26 00:15 EVNT.47483658._002059.pool.root.1
[2025-11-27 15:20:38] -rw-r--r--. 3 boincer umatlas 411780370 Nov 26 00:15 ATLAS.root_0
[2025-11-27 15:20:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:15 start_atlas.sh
[2025-11-27 15:20:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:15 shared
[2025-11-27 15:20:38] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:15 input.tar.gz
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:15 boinc_lockfile
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:28 pandaJob.out
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas        57 Nov 26 00:28 setup.sh.local
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas    991877 Nov 26 00:28 agis_schedconf.cvmfs.json
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:38 boinc_task_state.xml
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas 918140665 Nov 27 09:04 HITS.47556161._000428.pool.root.1
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas      1059 Nov 27 09:04 memory_monitor_summary.json
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas   2817012 Nov 27 09:05 log.47556161._000428.job.log.tgz.1
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas        96 Nov 27 09:05 pilot_heartbeat.json
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas      8618 Nov 27 09:05 heartbeat.json
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas      5010 Nov 27 09:06 pilotlog.txt
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas  14939670 Nov 27 09:06 log.47556161._000428.job.log.1
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas       353 Nov 27 09:06 output.list
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:06 runtime_log
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas  17776640 Nov 27 09:06 result.tar.gz
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas      9429 Nov 27 09:06 runtime_log.err
[2025-11-27 15:20:38] -rw-------. 1 boincer umatlas       788 Nov 27 09:06 GJyKDmuarh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSBJKDmrf2Yzn.diag
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas      6616 Nov 27 15:20 init_data.xml
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:20 boinc_mmap_file
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:20 wrapper_checkpoint.txt
[2025-11-27 15:20:38] -rw-r--r--. 1 boincer umatlas     23346 Nov 27 15:20 stderr.txt
[2025-11-27 15:20:39] HITS file was successfully produced:
[2025-11-27 15:20:39] -rw-------. 1 boincer umatlas 918140665 Nov 27 09:04 shared/HITS.pool.root.1
[2025-11-27 15:20:39]  *** Contents of shared directory: ***
[2025-11-27 15:20:39] total 1316720
[2025-11-27 15:20:39] -rw-r--r--. 3 boincer umatlas 411780370 Nov 26 00:15 ATLAS.root_0
[2025-11-27 15:20:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:15 start_atlas.sh
[2025-11-27 15:20:39] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:15 input.tar.gz
[2025-11-27 15:20:39] -rw-------. 1 boincer umatlas 918140665 Nov 27 09:04 HITS.pool.root.1
[2025-11-27 15:20:39] -rw-------. 1 boincer umatlas  17776640 Nov 27 09:06 result.tar.gz
15:20:41 (3067734): run_atlas exited; CPU time 351193.293065
15:20:41 (3067734): called boinc_finish(0)

</stderr_txt>
]]>

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