Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:21 (3918342): wrapper (7.7.26015): starting
00:12:21 (3918342): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:21] Arguments: --nthreads 8
[2025-11-26 00:12:21] Threads: 8
[2025-11-26 00:12:21] Checking for CVMFS
[2025-11-26 00:12:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:23] 2.13.3.0 9158 29569 298692 153310 0 139 31158995 32935937 26163 16776704 0 170888319 99.784 97084289 33833 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:12:23] CVMFS is ok
[2025-11-26 00:12:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:24] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:24] Checking for apptainer binary...
[2025-11-26 00:12:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:24] Running /usr/bin/apptainer --version
[2025-11-26 00:12:24] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:24] c-8-16.aglt2.org
[2025-11-26 00:12:24] apptainer works
[2025-11-26 00:12:24] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:24] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:24] Starting ATLAS job with PandaID=6896218894
[2025-11-26 00:12:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:17:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:17:45] 2025-11-27 17:16:35,711 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:17:45] 2025-11-27 17:16:35,753 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1397
[2025-11-27 12:17:45] 2025-11-27 17:16:35,754 | INFO     | monitor loop #7136: job 0:6896218894 is in state 'finished'
[2025-11-27 12:17:45] 2025-11-27 17:16:35,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:17:45] 2025-11-27 17:16:35,795 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896218894/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:17:45] 2025-11-27 17:16:35,796 | INFO     | extracted standard info from prmon json
[2025-11-27 12:17:45] 2025-11-27 17:16:35,801 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:17:45] 2025-11-27 17:16:35,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:17:45] 2025-11-27 17:16:35,864 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:17:45] 2025-11-27 17:16:35,867 | INFO     | sum of square deviations: 2975432380527.5957
[2025-11-27 12:17:45] 2025-11-27 17:16:35,989 | INFO     | sum of deviations: 11833896681996.236
[2025-11-27 12:17:45] 2025-11-27 17:16:35,989 | INFO     | mean x: 1764198951.3990588
[2025-11-27 12:17:45] 2025-11-27 17:16:35,989 | INFO     | mean y: 2950568.9148235293
[2025-11-27 12:17:45] 2025-11-27 17:16:35,990 | INFO     | intersect: -7013625661.811229
[2025-11-27 12:17:45] 2025-11-27 17:16:35,993 | INFO     | chi2: 16.908505453342073
[2025-11-27 12:17:45] 2025-11-27 17:16:35,996 | INFO     | sum of square deviations: 2954480016928.7534
[2025-11-27 12:17:45] 2025-11-27 17:16:36,121 | INFO     | time since job start (129782s) is within the limit (172800.0s)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,129 | INFO     | sum of deviations: 12607261178436.896
[2025-11-27 12:17:45] 2025-11-27 17:16:36,129 | INFO     | mean x: 1764198798.904717
[2025-11-27 12:17:45] 2025-11-27 17:16:36,129 | INFO     | mean y: 2956197.3311320753
[2025-11-27 12:17:45] 2025-11-27 17:16:36,129 | INFO     | intersect: -7525175623.170124
[2025-11-27 12:17:45] 2025-11-27 17:16:36,132 | INFO     | chi2: 13.427715183080831
[2025-11-27 12:17:45] 2025-11-27 17:16:36,132 | INFO     | current chi2=13.427715183080831 (change=20.586031567758944 %)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,132 | INFO     | right removable region: 2119
[2025-11-27 12:17:45] 2025-11-27 17:16:36,135 | INFO     | sum of square deviations: 2954476907148.751
[2025-11-27 12:17:45] 2025-11-27 17:16:36,238 | INFO     | sum of deviations: 10926162218037.334
[2025-11-27 12:17:45] 2025-11-27 17:16:36,238 | INFO     | mean x: 1764199103.904717
[2025-11-27 12:17:45] 2025-11-27 17:16:36,239 | INFO     | mean y: 2957174.675
[2025-11-27 12:17:45] 2025-11-27 17:16:36,239 | INFO     | intersect: -6521353625.500276
[2025-11-27 12:17:45] 2025-11-27 17:16:36,241 | INFO     | chi2: 12.395211613290375
[2025-11-27 12:17:45] 2025-11-27 17:16:36,242 | INFO     | current chi2=12.395211613290375 (change=26.69244690197984 %)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,244 | INFO     | sum of square deviations: 2933620040269.772
[2025-11-27 12:17:45] 2025-11-27 17:16:36,347 | INFO     | sum of deviations: 10147564019054.518
[2025-11-27 12:17:45] 2025-11-27 17:16:36,347 | INFO     | mean x: 1764199256.4104018
[2025-11-27 12:17:45] 2025-11-27 17:16:36,347 | INFO     | mean y: 2962867.6676122933
[2025-11-27 12:17:45] 2025-11-27 17:16:36,347 | INFO     | intersect: -6099505976.643478
[2025-11-27 12:17:45] 2025-11-27 17:16:36,350 | INFO     | chi2: 9.195297249578534
[2025-11-27 12:17:45] 2025-11-27 17:16:36,350 | INFO     | current chi2=9.195297249578534 (change=25.81573000561631 %)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,353 | INFO     | sum of square deviations: 2912861547328.1514
[2025-11-27 12:17:45] 2025-11-27 17:16:36,456 | INFO     | sum of deviations: 9536785409015.873
[2025-11-27 12:17:45] 2025-11-27 17:16:36,457 | INFO     | mean x: 1764199408.9161139
[2025-11-27 12:17:45] 2025-11-27 17:16:36,457 | INFO     | mean y: 2967353.8298578197
[2025-11-27 12:17:45] 2025-11-27 17:16:36,457 | INFO     | intersect: -5773067966.8252945
[2025-11-27 12:17:45] 2025-11-27 17:16:36,459 | INFO     | chi2: 7.292770150253944
[2025-11-27 12:17:45] 2025-11-27 17:16:36,460 | INFO     | current chi2=7.292770150253944 (change=20.690218572453347 %)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,460 | INFO     | left removable region: 30
[2025-11-27 12:17:45] 2025-11-27 17:16:36,462 | INFO     | sum of square deviations: 2826752066669.2603
[2025-11-27 12:17:45] 2025-11-27 17:16:36,562 | INFO     | sum of deviations: 10037092225387.562
[2025-11-27 12:17:45] 2025-11-27 17:16:36,562 | INFO     | mean x: 1764199683.4274774
[2025-11-27 12:17:45] 2025-11-27 17:16:36,562 | INFO     | mean y: 2977601.1158449017
[2025-11-27 12:17:45] 2025-11-27 17:16:36,562 | INFO     | intersect: -6261255875.655135
[2025-11-27 12:17:45] 2025-11-27 17:16:36,565 | INFO     | chi2: 2.8451051480940244
[2025-11-27 12:17:45] 2025-11-27 17:16:36,565 | INFO     | current memory leak: 3.55 B/s (using 2089 data points, chi2=2.85)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,567 | INFO     | could have reported an average CPU frequency of 2600 MHz (74 samples)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | ..............................
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . Timing measurements:
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . get job = 0 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . initial setup = 6 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . payload setup = 51 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . stage-in = 0 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . payload execution = 129643 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . stage-out = 5 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,568 | INFO     | . log creation = 1 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,569 | INFO     | ..............................
[2025-11-27 12:17:45] 2025-11-27 17:16:36,893 | INFO     | 
[2025-11-27 12:17:45] 2025-11-27 17:16:36,894 | INFO     | job summary report
[2025-11-27 12:17:45] 2025-11-27 17:16:36,894 | INFO     | --------------------------------------------------
[2025-11-27 12:17:45] 2025-11-27 17:16:36,894 | INFO     | PanDA job id: 6896218894
[2025-11-27 12:17:45] 2025-11-27 17:16:36,894 | INFO     | task id: 47556161
[2025-11-27 12:17:45] 2025-11-27 17:16:36,894 | INFO     | errors: (none)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,894 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | pilot state: finished 
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | transexitcode: 0
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | exeerrorcode: 0
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | exeerrordiag: 
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | exitcode: 0
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | exitmsg: OK
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | cpuconsumptiontime: 309240 s
[2025-11-27 12:17:45] 2025-11-27 17:16:36,895 | INFO     | nevents: 1000
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | neventsw: 0
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | pid: 3944408
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | pgrp: 3944408
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | corecount: 8
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | event service: False
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | sizes: {0: 2284080, 1: 2284164, 2: 2284363, 13: 2284363, 24: 2284419, 33: 2284709, 35: 2284893, 129696: 2367917, 129701: 2376911, 129703: 2376967, 129715: 2377213}
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | --------------------------------------------------
[2025-11-27 12:17:45] 2025-11-27 17:16:36,896 | INFO     | 
[2025-11-27 12:17:45] 2025-11-27 17:16:36,897 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 12:17:45] 2025-11-27 17:16:36,933 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,934 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,934 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,934 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,934 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,936 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,936 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:17:45] 2025-11-27 17:16:36,937 | INFO     | job 6896218894 has completed (purged errors)
[2025-11-27 12:17:45] 2025-11-27 17:16:36,937 | INFO     | overall cleanup function is called
[2025-11-27 12:17:45] 2025-11-27 17:16:37,956 | INFO     | --- collectZombieJob: --- 10, [3944408]
[2025-11-27 12:17:45] 2025-11-27 17:16:37,957 | INFO     | zombie collector waiting for pid 3944408
[2025-11-27 12:17:45] 2025-11-27 17:16:37,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:17:45] 2025-11-27 17:16:37,957 | INFO     | collected zombie processes
[2025-11-27 12:17:45] 2025-11-27 17:16:37,957 | INFO     | will attempt to kill all subprocesses of pid=3944408
[2025-11-27 12:17:45] 2025-11-27 17:16:38,448 | INFO     | process IDs to be killed: [3944408] (in reverse order)
[2025-11-27 12:17:45] 2025-11-27 17:16:38,582 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:17:45] 2025-11-27 17:16:38,583 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:17:45] 2025-11-27 17:16:38,600 | INFO     | did not find any defunct processes belonging to 3944408
[2025-11-27 12:17:45] 2025-11-27 17:16:38,617 | INFO     | did not find any defunct processes belonging to 3944408
[2025-11-27 12:17:45] 2025-11-27 17:16:38,619 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:17:45] 2025-11-27 17:16:38,619 | INFO     | ready for new job
[2025-11-27 12:17:45] 2025-11-27 17:16:38,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:17:45] 2025-11-27 17:16:38,629 | INFO     | ***************************************
[2025-11-27 12:17:45] 2025-11-27 17:16:38,630 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:17:45] 2025-11-27 17:16:38,630 | INFO     | ***************************************
[2025-11-27 12:17:45] 2025-11-27 17:16:38,630 | INFO     | 
[2025-11-27 12:17:45] 2025-11-27 17:16:38,632 | INFO     | architecture information:
[2025-11-27 12:17:45] 2025-11-27 17:16:38,633 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:17:45] 2025-11-27 17:16:38,649 | INFO     | cat /etc/os-release:
[2025-11-27 12:17:45] NAME="CentOS Linux"
[2025-11-27 12:17:45] VERSION="7 (Core)"
[2025-11-27 12:17:45] ID="centos"
[2025-11-27 12:17:45] ID_LIKE="rhel fedora"
[2025-11-27 12:17:45] VERSION_ID="7"
[2025-11-27 12:17:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:17:45] ANSI_COLOR="0;31"
[2025-11-27 12:17:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:17:45] HOME_URL="https://www.centos.org/"
[2025-11-27 12:17:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:17:45] 
[2025-11-27 12:17:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:17:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:17:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:17:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:17:45] 
[2025-11-27 12:17:45] 2025-11-27 17:16:38,649 | INFO     | ***************************************
[2025-11-27 12:17:45] 2025-11-27 17:16:39,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 12:17:45] 2025-11-27 17:16:39,177 | INFO     | sufficient remaining disk space (73793536000 B)
[2025-11-27 12:17:45] 2025-11-27 17:16:39,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:17:45] 2025-11-27 17:16:39,178 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:17:45] 2025-11-27 17:16:39,178 | INFO     | update_server=False
[2025-11-27 12:17:45] 2025-11-27 17:16:39,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:17:45] 2025-11-27 17:16:39,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:17:45] 2025-11-27 17:16:39,268 | INFO     | aborting loop
[2025-11-27 12:17:45] 2025-11-27 17:16:39,428 | INFO     | all payload control threads have been joined
[2025-11-27 12:17:45] 2025-11-27 17:16:39,732 | INFO     | all data control threads have been joined
[2025-11-27 12:17:45] 2025-11-27 17:16:39,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:17:45] 2025-11-27 17:16:40,189 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,198 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,217 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,276 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,435 | INFO     | [payload] control thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,489 | INFO     | all job control threads have been joined
[2025-11-27 12:17:45] 2025-11-27 17:16:40,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:17:45] 2025-11-27 17:16:40,758 | INFO     | [data] control thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,888 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,893 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:40,965 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:41,419 | INFO     | [job] validate thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:41,496 | INFO     | [job] control thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:41,505 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:41,508 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:41,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:17:45] 2025-11-27 17:16:42,576 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:42,687 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:16:43,817 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:17:45] 2025-11-27 17:17:10,135 | INFO     | PID=3926835 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:17:45] 2025-11-27 17:17:10,135 | INFO     | .. there are 39 such processes running
[2025-11-27 12:17:45] 2025-11-27 17:17:10,140 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:17:45] 2025-11-27 17:17:10,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:17:45] 2025-11-27 17:17:10,141 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:17:45] 2025-11-27 17:17:37,394 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:17:45] 2025-11-27 17:17:38,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140104920074048)>', '<ExcThread(monitor, started 140104442046208)>']
[2025-11-27 12:17:45] 2025-11-27 17:17:39,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:17:45] 2025-11-27 17:17:39,317 | INFO     | [monitor] control thread has ended
[2025-11-27 12:17:45] 2025-11-27 17:17:43,994 | INFO     | all workflow threads have been joined
[2025-11-27 12:17:45] 2025-11-27 17:17:43,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:17:45] 2025-11-27 17:17:43,995 | INFO     | traces error code: 0
[2025-11-27 12:17:45] 2025-11-27 17:17:44,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:17:45] 2025-11-27 17:17:44,408 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:17:45] 2025-11-27 17:17:44,412 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:17:45] 2025-11-27 17:17:44,415 [wrapper] pilotpid: 3926835
[2025-11-27 12:17:45] 2025-11-27 17:17:44,418 [wrapper] Pilot exit status: 0
[2025-11-27 12:17:45] 2025-11-27 17:17:44,433 [wrapper] pandaids: 6896218894
[2025-11-27 12:17:45] 2025-11-27 17:17:44,560 [wrapper] cleanup supervisor_pilot 3512632 3926836
[2025-11-27 12:17:45] 2025-11-27 17:17:44,571 [wrapper] Test setup, not cleaning
[2025-11-27 12:17:45] 2025-11-27 17:17:44,581 [wrapper] apfmon messages muted
[2025-11-27 12:17:45] 2025-11-27 17:17:44,609 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:17:45] 2025-11-27 17:17:44,673 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:17:45]  *** Error codes and diagnostics ***
[2025-11-27 12:17:45]     "exeErrorCode": 0,
[2025-11-27 12:17:45]     "exeErrorDiag": "",
[2025-11-27 12:17:45]     "pilotErrorCode": 0,
[2025-11-27 12:17:45]     "pilotErrorDiag": "",
[2025-11-27 12:17:45]  *** Listing of results directory ***
[2025-11-27 12:17:45] total 1359216
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:37 queuedata.json
[2025-11-27 12:17:45] -rwx------. 1 boincer umatlas     36292 Nov 24 14:37 runpilot2-wrapper.sh
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:17:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-27 12:17:45] -rw-r--r--. 2 boincer umatlas 411780370 Nov 26 00:12 EVNT.47483658._002059.pool.root.1
[2025-11-27 12:17:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 12:17:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-27 12:17:45] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:12 input.tar.gz
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 00:12 pandaJob.out
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas        57 Nov 26 00:12 setup.sh.local
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas    991877 Nov 26 00:13 agis_schedconf.cvmfs.json
[2025-11-27 12:17:45] drwx------. 5 boincer umatlas      4096 Nov 26 00:13 pilot3
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:00 boinc_task_state.xml
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 12:12 init_data.xml
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas 939262971 Nov 27 12:15 HITS.47556161._000421.pool.root.1
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas      1059 Nov 27 12:16 memory_monitor_summary.json
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas   2897372 Nov 27 12:16 log.47556161._000421.job.log.tgz.1
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas      8614 Nov 27 12:16 heartbeat.json
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas        95 Nov 27 12:17 pilot_heartbeat.json
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas      4824 Nov 27 12:17 pilotlog.txt
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas  15537788 Nov 27 12:17 log.47556161._000421.job.log.1
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:17 wrapper_checkpoint.txt
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas       353 Nov 27 12:17 output.list
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:17 runtime_log
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas  18452480 Nov 27 12:17 result.tar.gz
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas       661 Nov 27 12:17 zJ2KDmuYrh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxsLKDmTLmSGm.diag
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas      9334 Nov 27 12:17 runtime_log.err
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:17 boinc_mmap_file
[2025-11-27 12:17:45] -rw-r--r--. 1 boincer umatlas     21131 Nov 27 12:17 stderr.txt
[2025-11-27 12:17:45] HITS file was successfully produced:
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas 939262971 Nov 27 12:15 shared/HITS.pool.root.1
[2025-11-27 12:17:45]  *** Contents of shared directory: ***
[2025-11-27 12:17:45] total 1338008
[2025-11-27 12:17:45] -rw-r--r--. 2 boincer umatlas 411780370 Nov 26 00:12 ATLAS.root_0
[2025-11-27 12:17:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 12:17:45] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:12 input.tar.gz
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas 939262971 Nov 27 12:15 HITS.pool.root.1
[2025-11-27 12:17:45] -rw-------. 1 boincer umatlas  18452480 Nov 27 12:17 result.tar.gz
12:17:46 (3918342): run_atlas exited; CPU time 314576.386554
12:17:46 (3918342): called boinc_finish(0)

</stderr_txt>
]]>

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