Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:23:07 (2805943): wrapper (7.7.26015): starting
00:23:07 (2805943): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:23:07] Arguments: --nthreads 9
[2025-11-26 00:23:07] Threads: 9
[2025-11-26 00:23:07] Checking for CVMFS
[2025-11-26 00:23:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:23:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:23:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:23:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:23:08] 2.13.3.0 11771 29579 228268 153311 2 178 30021612 32935936 41936 16776704 0 210482393 99.600 217735329 38346 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:23:08] CVMFS is ok
[2025-11-26 00:23:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:23:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:23:08] Further information can be found at the LHC@home message board.
[2025-11-26 00:23:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:23:08] Checking for apptainer binary...
[2025-11-26 00:23:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:23:08] Running /usr/bin/apptainer --version
[2025-11-26 00:23:08] apptainer version 1.4.4-1.el9
[2025-11-26 00:23:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:23:28] c7-2-14.aglt2.org
[2025-11-26 00:23:28] apptainer works
[2025-11-26 00:23:28] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:23:28] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:23:28] Starting ATLAS job with PandaID=6896716139
[2025-11-26 00:23:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:57:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:57:33] 2025-11-26 19:56:36,508 | INFO     | this job has now completed (state=finished)
[2025-11-26 14:57:33] 2025-11-26 19:56:36,508 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 14:57:33] 2025-11-26 19:56:36,508 | INFO     | log transfer has been attempted: DONE
[2025-11-26 14:57:33] 2025-11-26 19:56:36,508 | INFO     | job 6896716139 has finished - writing final server update
[2025-11-26 14:57:33] 2025-11-26 19:56:36,509 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 14:57:33] 2025-11-26 19:56:36,509 | INFO     | executing command: lscpu
[2025-11-26 14:57:33] 2025-11-26 19:56:36,565 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 14:57:33] 2025-11-26 19:56:36,708 | INFO     | time since job start (52362s) is within the limit (172800.0s)
[2025-11-26 14:57:33] 2025-11-26 19:56:38,286 | INFO     | monitor loop #3195: job 0:6896716139 is in state 'finished'
[2025-11-26 14:57:33] 2025-11-26 19:56:38,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:33] 2025-11-26 19:56:38,714 | INFO     | time since job start (52364s) is within the limit (172800.0s)
[2025-11-26 14:57:33] 2025-11-26 19:56:40,720 | INFO     | time since job start (52366s) is within the limit (172800.0s)
[2025-11-26 14:57:33] 2025-11-26 19:56:40,791 | INFO     | monitor loop #3196: job 0:6896716139 is in state 'finished'
[2025-11-26 14:57:33] 2025-11-26 19:56:40,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,302 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:57:33] 2025-11-26 19:56:42,308 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3125.17609375
[2025-11-26 14:57:33] 2025-11-26 19:56:42,324 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896716139/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,324 | INFO     | extracted standard info from prmon json
[2025-11-26 14:57:33] 2025-11-26 19:56:42,324 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:57:33] 2025-11-26 19:56:42,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:57:33] 2025-11-26 19:56:42,382 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:57:33] 2025-11-26 19:56:42,388 | INFO     | sum of square deviations: 195846138921.88083
[2025-11-26 14:57:33] 2025-11-26 19:56:42,410 | INFO     | sum of deviations: 33941918667498.457
[2025-11-26 14:57:33] 2025-11-26 19:56:42,411 | INFO     | mean x: 1764160826.399767
[2025-11-26 14:57:33] 2025-11-26 19:56:42,411 | INFO     | mean y: 5381198.156177157
[2025-11-26 14:57:33] 2025-11-26 19:56:42,411 | INFO     | intersect: -305739749217.3702
[2025-11-26 14:57:33] 2025-11-26 19:56:42,411 | INFO     | chi2: 167.02321253719668
[2025-11-26 14:57:33] 2025-11-26 19:56:42,412 | INFO     | sum of square deviations: 192442208225.3084
[2025-11-26 14:57:33] 2025-11-26 19:56:42,452 | INFO     | sum of deviations: 34517834178418.234
[2025-11-26 14:57:33] 2025-11-26 19:56:42,452 | INFO     | mean x: 1764160673.905041
[2025-11-26 14:57:33] 2025-11-26 19:56:42,452 | INFO     | mean y: 5406987.175849942
[2025-11-26 14:57:33] 2025-11-26 19:56:42,456 | INFO     | intersect: -316427282948.73376
[2025-11-26 14:57:33] 2025-11-26 19:56:42,457 | INFO     | chi2: 207.1106994107861
[2025-11-26 14:57:33] 2025-11-26 19:56:42,457 | INFO     | current chi2=207.1106994107861 (change=-24.00114706490979 %)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,458 | INFO     | right removable region: 852
[2025-11-26 14:57:33] 2025-11-26 19:56:42,458 | INFO     | sum of square deviations: 192441789400.11786
[2025-11-26 14:57:33] 2025-11-26 19:56:42,534 | INFO     | sum of deviations: 33380387457578.61
[2025-11-26 14:57:33] 2025-11-26 19:56:42,534 | INFO     | mean x: 1764160978.9038687
[2025-11-26 14:57:33] 2025-11-26 19:56:42,535 | INFO     | mean y: 5406337.604923799
[2025-11-26 14:57:33] 2025-11-26 19:56:42,535 | INFO     | intersect: -306000774528.4115
[2025-11-26 14:57:33] 2025-11-26 19:56:42,535 | INFO     | chi2: 164.3918430517707
[2025-11-26 14:57:33] 2025-11-26 19:56:42,535 | INFO     | current chi2=164.3918430517707 (change=1.5754513671804522 %)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,536 | INFO     | left removable region: 10
[2025-11-26 14:57:33] 2025-11-26 19:56:42,536 | INFO     | sum of square deviations: 185092103102.171
[2025-11-26 14:57:33] 2025-11-26 19:56:42,556 | INFO     | sum of deviations: 33581510843570.26
[2025-11-26 14:57:33] 2025-11-26 19:56:42,556 | INFO     | mean x: 1764160948.4133017
[2025-11-26 14:57:33] 2025-11-26 19:56:42,556 | INFO     | mean y: 5449379.921615202
[2025-11-26 14:57:33] 2025-11-26 19:56:42,556 | INFO     | intersect: -320068659812.31226
[2025-11-26 14:57:33] 2025-11-26 19:56:42,557 | INFO     | chi2: 206.82851645511408
[2025-11-26 14:57:33] 2025-11-26 19:56:42,557 | INFO     | current memory leak: 181.43 B/s (using 842 data points, chi2=206.83)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,557 | INFO     | could have reported an average CPU frequency of 3232 MHz (32 samples)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,557 | INFO     | ..............................
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . Timing measurements:
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . get job = 0 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . initial setup = 3 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . payload setup = 16 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . stage-in = 0 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . payload execution = 52312 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . stage-out = 4 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | . log creation = 0 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,558 | INFO     | ..............................
[2025-11-26 14:57:33] 2025-11-26 19:56:42,670 | INFO     | 
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | job summary report
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | --------------------------------------------------
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | PanDA job id: 6896716139
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | task id: 47556173
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | errors: (none)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | pilot state: finished 
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | transexitcode: 0
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | exeerrorcode: 0
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | exeerrordiag: 
[2025-11-26 14:57:33] 2025-11-26 19:56:42,671 | INFO     | exitcode: 0
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | exitmsg: OK
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | cpuconsumptiontime: 190235 s
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | nevents: 1000
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | neventsw: 0
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | pid: 2821886
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | pgrp: 2821886
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | corecount: 9
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | event service: False
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | sizes: {0: 2283484, 1: 2284169, 2: 2284368, 12: 2284630, 13: 2284658, 52333: 2334312, 52337: 2343306, 52340: 2343362, 52347: 2343608}
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | --------------------------------------------------
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | 
[2025-11-26 14:57:33] 2025-11-26 19:56:42,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 14:57:33] 2025-11-26 19:56:42,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,728 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,729 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:57:33] 2025-11-26 19:56:42,730 | INFO     | job 6896716139 has completed (purged errors)
[2025-11-26 14:57:33] 2025-11-26 19:56:42,730 | INFO     | overall cleanup function is called
[2025-11-26 14:57:33] 2025-11-26 19:56:42,982 | INFO     | PID=2813904 has CPU usage=18.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 14:57:33] 2025-11-26 19:56:42,982 | INFO     | .. there are 60 such processes running
[2025-11-26 14:57:33] 2025-11-26 19:56:43,765 | INFO     | --- collectZombieJob: --- 10, [2821886]
[2025-11-26 14:57:33] 2025-11-26 19:56:43,765 | INFO     | zombie collector waiting for pid 2821886
[2025-11-26 14:57:33] 2025-11-26 19:56:43,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:57:33] 2025-11-26 19:56:43,765 | INFO     | collected zombie processes
[2025-11-26 14:57:33] 2025-11-26 19:56:43,765 | INFO     | will attempt to kill all subprocesses of pid=2821886
[2025-11-26 14:57:33] 2025-11-26 19:56:44,398 | INFO     | process IDs to be killed: [2821886] (in reverse order)
[2025-11-26 14:57:33] 2025-11-26 19:56:44,574 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:57:33] 2025-11-26 19:56:44,574 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:57:33] 2025-11-26 19:56:44,597 | INFO     | did not find any defunct processes belonging to 2821886
[2025-11-26 14:57:33] 2025-11-26 19:56:44,618 | INFO     | did not find any defunct processes belonging to 2821886
[2025-11-26 14:57:33] 2025-11-26 19:56:44,619 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:57:33] 2025-11-26 19:56:44,619 | INFO     | ready for new job
[2025-11-26 14:57:33] 2025-11-26 19:56:44,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:57:33] 2025-11-26 19:56:44,622 | INFO     | ***************************************
[2025-11-26 14:57:33] 2025-11-26 19:56:44,622 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:57:33] 2025-11-26 19:56:44,622 | INFO     | ***************************************
[2025-11-26 14:57:33] 2025-11-26 19:56:44,622 | INFO     | 
[2025-11-26 14:57:33] 2025-11-26 19:56:44,626 | INFO     | architecture information:
[2025-11-26 14:57:33] 2025-11-26 19:56:44,627 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:57:33] 2025-11-26 19:56:44,638 | INFO     | cat /etc/os-release:
[2025-11-26 14:57:33] NAME="CentOS Linux"
[2025-11-26 14:57:33] VERSION="7 (Core)"
[2025-11-26 14:57:33] ID="centos"
[2025-11-26 14:57:33] ID_LIKE="rhel fedora"
[2025-11-26 14:57:33] VERSION_ID="7"
[2025-11-26 14:57:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:57:33] ANSI_COLOR="0;31"
[2025-11-26 14:57:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:57:33] HOME_URL="https://www.centos.org/"
[2025-11-26 14:57:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:57:33] 
[2025-11-26 14:57:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:57:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:57:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:57:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:57:33] 
[2025-11-26 14:57:33] 2025-11-26 19:56:44,638 | INFO     | ***************************************
[2025-11-26 14:57:33] 2025-11-26 19:56:45,142 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 14:57:33] 2025-11-26 19:56:45,159 | INFO     | sufficient remaining disk space (67277684736 B)
[2025-11-26 14:57:33] 2025-11-26 19:56:45,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:57:33] 2025-11-26 19:56:45,160 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:57:33] 2025-11-26 19:56:45,160 | INFO     | update_server=False
[2025-11-26 14:57:33] 2025-11-26 19:56:45,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:57:33] 2025-11-26 19:56:45,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:57:33] 2025-11-26 19:56:45,160 | INFO     | aborting loop
[2025-11-26 14:57:33] 2025-11-26 19:56:45,674 | INFO     | all job control threads have been joined
[2025-11-26 14:57:33] 2025-11-26 19:56:46,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:57:33] 2025-11-26 19:56:46,165 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:46,165 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:46,180 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:46,224 | INFO     | all data control threads have been joined
[2025-11-26 14:57:33] 2025-11-26 19:56:46,305 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:46,365 | INFO     | all payload control threads have been joined
[2025-11-26 14:57:33] 2025-11-26 19:56:46,488 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:46,614 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:46,680 | INFO     | [job] control thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:47,018 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:57:33] 2025-11-26 19:56:47,155 | INFO     | [job] validate thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:47,230 | INFO     | [data] control thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:47,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:47,371 | INFO     | [payload] control thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:47,488 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:47,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:57:33] 2025-11-26 19:56:47,659 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:48,094 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:48,648 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:56:51,036 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:57:33] 2025-11-26 19:57:14,028 | INFO     | 52372s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 14:57:33] 2025-11-26 19:57:15,833 | INFO     | PID=2813904 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:57:33] 2025-11-26 19:57:15,833 | INFO     | .. there are 60 such processes running
[2025-11-26 14:57:33] 2025-11-26 19:57:15,834 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:57:33] 2025-11-26 19:57:15,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:57:33] 2025-11-26 19:57:15,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:57:33] 2025-11-26 19:57:26,537 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:57:33] 2025-11-26 19:57:27,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966078547776)>', '<ExcThread(monitor, started 139965602199296)>']
[2025-11-26 14:57:33] 2025-11-26 19:57:27,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:57:33] 2025-11-26 19:57:27,904 | INFO     | [monitor] control thread has ended
[2025-11-26 14:57:33] 2025-11-26 19:57:32,848 | INFO     | all workflow threads have been joined
[2025-11-26 14:57:33] 2025-11-26 19:57:32,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:57:33] 2025-11-26 19:57:32,853 | INFO     | traces error code: 0
[2025-11-26 14:57:33] 2025-11-26 19:57:32,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:57:33] 2025-11-26 19:57:33,241 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:57:33] 2025-11-26 19:57:33,243 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:57:33] 2025-11-26 19:57:33,245 [wrapper] pilotpid: 2813904
[2025-11-26 14:57:33] 2025-11-26 19:57:33,247 [wrapper] Pilot exit status: 0
[2025-11-26 14:57:33] 2025-11-26 19:57:33,262 [wrapper] pandaids: 6896716139
[2025-11-26 14:57:33] 2025-11-26 19:57:33,497 [wrapper] cleanup supervisor_pilot 4156469 2813905
[2025-11-26 14:57:33] 2025-11-26 19:57:33,500 [wrapper] Test setup, not cleaning
[2025-11-26 14:57:33] 2025-11-26 19:57:33,503 [wrapper] apfmon messages muted
[2025-11-26 14:57:33] 2025-11-26 19:57:33,505 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:57:33] 2025-11-26 19:57:33,507 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:57:33]  *** Error codes and diagnostics ***
[2025-11-26 14:57:33]     "exeErrorCode": 0,
[2025-11-26 14:57:33]     "exeErrorDiag": "",
[2025-11-26 14:57:33]     "pilotErrorCode": 0,
[2025-11-26 14:57:33]     "pilotErrorDiag": "",
[2025-11-26 14:57:33]  *** Listing of results directory ***
[2025-11-26 14:57:33] total 1309356
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-26 14:57:33] -rwx------. 1 boincer umatlas     36292 Nov 25 02:18 runpilot2-wrapper.sh
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:18 queuedata.json
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:57:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:23 run_atlas
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:23 job.xml
[2025-11-26 14:57:33] -rw-r--r--. 2 boincer umatlas 407878796 Nov 26 00:23 EVNT.47483658._003073.pool.root.1
[2025-11-26 14:57:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:23 shared
[2025-11-26 14:57:33] -rw-r--r--. 2 boincer umatlas    590092 Nov 26 00:23 input.tar.gz
[2025-11-26 14:57:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:23 start_atlas.sh
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:23 boinc_lockfile
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:23 pandaJob.out
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas        57 Nov 26 00:23 setup.sh.local
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas    991877 Nov 26 00:23 agis_schedconf.cvmfs.json
[2025-11-26 14:57:33] drwx------. 5 boincer umatlas      4096 Nov 26 00:23 pilot3
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 14:47 init_data.xml
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:47 boinc_task_state.xml
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas 911293021 Nov 26 14:55 HITS.47556173._000552.pool.root.1
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas      1077 Nov 26 14:56 memory_monitor_summary.json
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas   2149426 Nov 26 14:56 log.47556173._000552.job.log.tgz.1
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas      8648 Nov 26 14:56 heartbeat.json
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas        95 Nov 26 14:57 pilot_heartbeat.json
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:57 boinc_mmap_file
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:57 wrapper_checkpoint.txt
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas      4940 Nov 26 14:57 pilotlog.txt
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas   6693937 Nov 26 14:57 log.47556173._000552.job.log.1
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas       353 Nov 26 14:57 output.list
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:57 runtime_log
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas   8867840 Nov 26 14:57 result.tar.gz
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 14:57 runtime_log.err
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas       665 Nov 26 14:57 BWFKDmqU2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0EMKDmllfwHn.diag
[2025-11-26 14:57:33] -rw-r--r--. 1 boincer umatlas     20324 Nov 26 14:57 stderr.txt
[2025-11-26 14:57:33] HITS file was successfully produced:
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas 911293021 Nov 26 14:55 shared/HITS.pool.root.1
[2025-11-26 14:57:33]  *** Contents of shared directory: ***
[2025-11-26 14:57:33] total 1297520
[2025-11-26 14:57:33] -rw-r--r--. 2 boincer umatlas 407878796 Nov 26 00:23 ATLAS.root_0
[2025-11-26 14:57:33] -rw-r--r--. 2 boincer umatlas    590092 Nov 26 00:23 input.tar.gz
[2025-11-26 14:57:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:23 start_atlas.sh
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas 911293021 Nov 26 14:55 HITS.pool.root.1
[2025-11-26 14:57:33] -rw-------. 1 boincer umatlas   8867840 Nov 26 14:57 result.tar.gz
14:57:35 (2805943): run_atlas exited; CPU time 191542.703388
14:57:35 (2805943): called boinc_finish(0)

</stderr_txt>
]]>

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