Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:03 (449074): wrapper (7.7.26015): starting
00:12:03 (449074): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:03] Arguments: --nthreads 8
[2025-11-26 00:12:03] Threads: 8
[2025-11-26 00:12:03] Checking for CVMFS
[2025-11-26 00:12:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:04] 2.13.2.0 6884 33908 218140 153310 1 83 30975865 40960000 28019 16776704 0 198372081 99.678 165328498 36765 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:12:04] CVMFS is ok
[2025-11-26 00:12:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:04] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:04] Checking for apptainer binary...
[2025-11-26 00:12:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:04] Running /usr/bin/apptainer --version
[2025-11-26 00:12:04] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:05] c-212-8.aglt2.org
[2025-11-26 00:12:05] apptainer works
[2025-11-26 00:12:05] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:05] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:05] Starting ATLAS job with PandaID=6896715554
[2025-11-26 00:12:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:15:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:15:18] 2025-11-27 17:13:37,475 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 12:15:18] 2025-11-27 17:13:37,499 | INFO     | executing command: lscpu
[2025-11-27 12:15:18] 2025-11-27 17:13:37,865 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 12:15:18] 2025-11-27 17:13:38,793 | INFO     | time since job start (129645s) is within the limit (172800.0s)
[2025-11-27 12:15:18] 2025-11-27 17:13:39,430 | INFO     | monitor loop #7985: job 0:6896715554 is in state 'finished'
[2025-11-27 12:15:18] 2025-11-27 17:13:39,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:15:18] 2025-11-27 17:13:41,953 | INFO     | PID=461695 has CPU usage=20.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:15:18] 2025-11-27 17:13:41,953 | INFO     | .. there are 38 such processes running
[2025-11-27 12:15:18] 2025-11-27 17:13:41,977 | INFO     | monitor loop #7986: job 0:6896715554 is in state 'finished'
[2025-11-27 12:15:18] 2025-11-27 17:13:41,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:15:18] 2025-11-27 17:13:42,985 | INFO     | time since job start (129649s) is within the limit (172800.0s)
[2025-11-27 12:15:18] 2025-11-27 17:13:44,482 | INFO     | monitor loop #7987: job 0:6896715554 is in state 'finished'
[2025-11-27 12:15:18] 2025-11-27 17:13:44,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:15:18] 2025-11-27 17:13:44,992 | INFO     | time since job start (129651s) is within the limit (172800.0s)
[2025-11-27 12:15:18] 2025-11-27 17:13:46,987 | INFO     | monitor loop #7988: job 0:6896715554 is in state 'finished'
[2025-11-27 12:15:18] 2025-11-27 17:13:46,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:15:18] 2025-11-27 17:13:46,999 | INFO     | time since job start (129653s) is within the limit (172800.0s)
[2025-11-27 12:15:18] 2025-11-27 17:13:47,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:15:18] 2025-11-27 17:13:47,911 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2989.591520833333
[2025-11-27 12:15:18] 2025-11-27 17:13:47,947 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896715554/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:15:18] 2025-11-27 17:13:47,948 | INFO     | extracted standard info from prmon json
[2025-11-27 12:15:18] 2025-11-27 17:13:47,948 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:15:18] 2025-11-27 17:13:47,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:15:18] 2025-11-27 17:13:47,989 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:15:18] 2025-11-27 17:13:47,992 | INFO     | sum of square deviations: 2971309304121.7563
[2025-11-27 12:15:18] 2025-11-27 17:13:48,254 | INFO     | sum of deviations: 46448556217762.21
[2025-11-27 12:15:18] 2025-11-27 17:13:48,254 | INFO     | mean x: 1764198817.5390773
[2025-11-27 12:15:18] 2025-11-27 17:13:48,254 | INFO     | mean y: 3672232.556967985
[2025-11-27 12:15:18] 2025-11-27 17:13:48,255 | INFO     | intersect: -27574906625.625607
[2025-11-27 12:15:18] 2025-11-27 17:13:48,256 | INFO     | chi2: 28.54796897106096
[2025-11-27 12:15:18] 2025-11-27 17:13:48,258 | INFO     | sum of square deviations: 2950375798696.3438
[2025-11-27 12:15:18] 2025-11-27 17:13:48,352 | INFO     | sum of deviations: 47462540233807.85
[2025-11-27 12:15:18] 2025-11-27 17:13:48,352 | INFO     | mean x: 1764198665.041529
[2025-11-27 12:15:18] 2025-11-27 17:13:48,352 | INFO     | mean y: 3679619.2746578576
[2025-11-27 12:15:18] 2025-11-27 17:13:48,353 | INFO     | intersect: -28376891478.46895
[2025-11-27 12:15:18] 2025-11-27 17:13:48,354 | INFO     | chi2: 24.23143621939227
[2025-11-27 12:15:18] 2025-11-27 17:13:48,354 | INFO     | current chi2=24.23143621939227 (change=15.120279680997118 %)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,354 | INFO     | right removable region: 2118
[2025-11-27 12:15:18] 2025-11-27 17:13:48,356 | INFO     | sum of square deviations: 2950374452426.345
[2025-11-27 12:15:18] 2025-11-27 17:13:48,446 | INFO     | sum of deviations: 45378317458079.53
[2025-11-27 12:15:18] 2025-11-27 17:13:48,446 | INFO     | mean x: 1764198970.041529
[2025-11-27 12:15:18] 2025-11-27 17:13:48,448 | INFO     | mean y: 3680028.3463898064
[2025-11-27 12:15:18] 2025-11-27 17:13:48,448 | INFO     | intersect: -27130631975.99063
[2025-11-27 12:15:18] 2025-11-27 17:13:48,450 | INFO     | chi2: 24.927306954013954
[2025-11-27 12:15:18] 2025-11-27 17:13:48,450 | INFO     | current chi2=24.927306954013954 (change=12.682730672424603 %)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,451 | INFO     | left removable region: 10
[2025-11-27 12:15:18] 2025-11-27 17:13:48,470 | INFO     | sum of square deviations: 2904666255470.5356
[2025-11-27 12:15:18] 2025-11-27 17:13:48,702 | INFO     | sum of deviations: 45990799989121.84
[2025-11-27 12:15:18] 2025-11-27 17:13:48,702 | INFO     | mean x: 1764198939.5460153
[2025-11-27 12:15:18] 2025-11-27 17:13:48,702 | INFO     | mean y: 3693610.4335863376
[2025-11-27 12:15:18] 2025-11-27 17:13:48,702 | INFO     | intersect: -27929608680.964443
[2025-11-27 12:15:18] 2025-11-27 17:13:48,724 | INFO     | chi2: 18.865868717529167
[2025-11-27 12:15:18] 2025-11-27 17:13:48,724 | INFO     | current memory leak: 15.83 B/s (using 2108 data points, chi2=18.87)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | could have reported an average CPU frequency of 3122 MHz (75 samples)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | ..............................
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . Timing measurements:
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . get job = 0 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . initial setup = 3 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . payload setup = 23 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . stage-in = 0 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . payload execution = 129556 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,726 | INFO     | . stage-out = 4 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,727 | INFO     | . log creation = 0 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,727 | INFO     | ..............................
[2025-11-27 12:15:18] 2025-11-27 17:13:48,832 | INFO     | 
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | job summary report
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | --------------------------------------------------
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | PanDA job id: 6896715554
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | task id: 47556161
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | errors: (none)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | pilot state: finished 
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | transexitcode: 0
[2025-11-27 12:15:18] 2025-11-27 17:13:48,833 | INFO     | exeerrorcode: 0
[2025-11-27 12:15:18] 2025-11-27 17:13:48,857 | INFO     | exeerrordiag: 
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | exitcode: 0
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | exitmsg: OK
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | cpuconsumptiontime: 205730 s
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | nevents: 1000
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | neventsw: 0
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | pid: 513197
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | pgrp: 513197
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | corecount: 8
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | event service: False
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | sizes: {0: 2284087, 1: 2284286, 12: 2284286, 23: 2284604, 33: 2284604, 129584: 2370131, 129589: 2379125, 129590: 2379181, 129604: 2379455}
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | --------------------------------------------------
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | 
[2025-11-27 12:15:18] 2025-11-27 17:13:48,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 12:15:18] 2025-11-27 17:13:48,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:15:18] 2025-11-27 17:13:48,941 | INFO     | job 6896715554 has completed (purged errors)
[2025-11-27 12:15:18] 2025-11-27 17:13:48,941 | INFO     | overall cleanup function is called
[2025-11-27 12:15:18] 2025-11-27 17:13:49,982 | INFO     | --- collectZombieJob: --- 10, [513197]
[2025-11-27 12:15:18] 2025-11-27 17:13:49,982 | INFO     | zombie collector waiting for pid 513197
[2025-11-27 12:15:18] 2025-11-27 17:13:49,983 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:15:18] 2025-11-27 17:13:49,983 | INFO     | collected zombie processes
[2025-11-27 12:15:18] 2025-11-27 17:13:49,983 | INFO     | will attempt to kill all subprocesses of pid=513197
[2025-11-27 12:15:18] 2025-11-27 17:13:51,667 | INFO     | process IDs to be killed: [513197] (in reverse order)
[2025-11-27 12:15:18] 2025-11-27 17:13:51,940 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:15:18] 2025-11-27 17:13:51,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:15:18] 2025-11-27 17:13:51,967 | INFO     | did not find any defunct processes belonging to 513197
[2025-11-27 12:15:18] 2025-11-27 17:13:52,067 | INFO     | did not find any defunct processes belonging to 513197
[2025-11-27 12:15:18] 2025-11-27 17:13:52,078 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:15:18] 2025-11-27 17:13:52,078 | INFO     | ready for new job
[2025-11-27 12:15:18] 2025-11-27 17:13:52,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:15:18] 2025-11-27 17:13:52,154 | INFO     | ***************************************
[2025-11-27 12:15:18] 2025-11-27 17:13:52,154 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:15:18] 2025-11-27 17:13:52,154 | INFO     | ***************************************
[2025-11-27 12:15:18] 2025-11-27 17:13:52,155 | INFO     | 
[2025-11-27 12:15:18] 2025-11-27 17:13:52,185 | INFO     | architecture information:
[2025-11-27 12:15:18] 2025-11-27 17:13:52,220 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:15:18] 2025-11-27 17:13:52,380 | INFO     | cat /etc/os-release:
[2025-11-27 12:15:18] NAME="CentOS Linux"
[2025-11-27 12:15:18] VERSION="7 (Core)"
[2025-11-27 12:15:18] ID="centos"
[2025-11-27 12:15:18] ID_LIKE="rhel fedora"
[2025-11-27 12:15:18] VERSION_ID="7"
[2025-11-27 12:15:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:15:18] ANSI_COLOR="0;31"
[2025-11-27 12:15:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:15:18] HOME_URL="https://www.centos.org/"
[2025-11-27 12:15:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:15:18] 
[2025-11-27 12:15:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:15:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:15:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:15:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:15:18] 
[2025-11-27 12:15:18] 2025-11-27 17:13:52,380 | INFO     | ***************************************
[2025-11-27 12:15:18] 2025-11-27 17:13:52,883 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 12:15:18] 2025-11-27 17:13:53,017 | INFO     | sufficient remaining disk space (119978065920 B)
[2025-11-27 12:15:18] 2025-11-27 17:13:53,017 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:15:18] 2025-11-27 17:13:53,017 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:15:18] 2025-11-27 17:13:53,017 | INFO     | update_server=False
[2025-11-27 12:15:18] 2025-11-27 17:13:53,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:15:18] 2025-11-27 17:13:53,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:15:18] 2025-11-27 17:13:53,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:15:18] 2025-11-27 17:13:53,047 | INFO     | aborting loop
[2025-11-27 12:15:18] 2025-11-27 17:13:53,720 | INFO     | all data control threads have been joined
[2025-11-27 12:15:18] 2025-11-27 17:13:53,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:15:18] 2025-11-27 17:13:54,022 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,053 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,360 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,435 | INFO     | all payload control threads have been joined
[2025-11-27 12:15:18] 2025-11-27 17:13:54,439 | INFO     | all job control threads have been joined
[2025-11-27 12:15:18] 2025-11-27 17:13:54,555 | INFO     | [job] validate thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,596 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,597 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,727 | INFO     | [data] control thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,823 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,828 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,845 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,853 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:54,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:15:18] 2025-11-27 17:13:55,025 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:55,441 | INFO     | [payload] control thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:55,445 | INFO     | [job] control thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:13:58,968 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:15:18] 2025-11-27 17:14:21,471 | INFO     | PID=461695 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 12:15:18] 2025-11-27 17:14:21,471 | INFO     | .. there are 38 such processes running
[2025-11-27 12:15:18] 2025-11-27 17:14:21,472 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:15:18] 2025-11-27 17:14:21,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:15:18] 2025-11-27 17:14:21,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:15:18] 2025-11-27 17:14:40,286 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:15:18] 2025-11-27 17:14:42,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378590656320)>', '<ExcThread(monitor, started 140378078422784)>']
[2025-11-27 12:15:18] 2025-11-27 17:14:42,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:15:18] 2025-11-27 17:14:42,606 | INFO     | [monitor] control thread has ended
[2025-11-27 12:15:18] 2025-11-27 17:14:47,318 | INFO     | all workflow threads have been joined
[2025-11-27 12:15:18] 2025-11-27 17:14:47,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:15:18] 2025-11-27 17:14:47,319 | INFO     | traces error code: 0
[2025-11-27 12:15:18] 2025-11-27 17:14:47,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:15:18] 2025-11-27 17:14:48,333 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:15:18] 2025-11-27 17:14:48,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:15:18] 2025-11-27 17:14:48,344 [wrapper] pilotpid: 461695
[2025-11-27 12:15:18] 2025-11-27 17:14:48,348 [wrapper] Pilot exit status: 0
[2025-11-27 12:15:18] 2025-11-27 17:14:48,368 [wrapper] pandaids: 6896715554
[2025-11-27 12:15:18] 2025-11-27 17:14:48,495 [wrapper] cleanup supervisor_pilot 1599972 461696
[2025-11-27 12:15:18] 2025-11-27 17:14:48,499 [wrapper] Test setup, not cleaning
[2025-11-27 12:15:18] 2025-11-27 17:14:48,501 [wrapper] apfmon messages muted
[2025-11-27 12:15:18] 2025-11-27 17:14:48,503 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:15:18] 2025-11-27 17:14:48,506 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:15:18]  *** Error codes and diagnostics ***
[2025-11-27 12:15:18]     "exeErrorCode": 0,
[2025-11-27 12:15:18]     "exeErrorDiag": "",
[2025-11-27 12:15:18]     "pilotErrorCode": 0,
[2025-11-27 12:15:18]     "pilotErrorDiag": "",
[2025-11-27 12:15:18]  *** Listing of results directory ***
[2025-11-27 12:15:18] total 1341464
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:12 queuedata.json
[2025-11-27 12:15:18] -rwx------. 1 boincer umatlas     36292 Nov 25 02:15 runpilot2-wrapper.sh
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:15:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-27 12:15:18] -rw-r--r--. 2 boincer umatlas 409691071 Nov 26 00:12 EVNT.47483658._002132.pool.root.1
[2025-11-27 12:15:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 12:15:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-27 12:15:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:12 input.tar.gz
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 00:12 pandaJob.out
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas        57 Nov 26 00:12 setup.sh.local
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas    991877 Nov 26 00:12 agis_schedconf.cvmfs.json
[2025-11-27 12:15:18] drwx------. 5 boincer umatlas      4096 Nov 26 00:12 pilot3
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas       534 Nov 27 12:01 boinc_task_state.xml
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 12:09 init_data.xml
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas 920988601 Nov 27 12:12 HITS.47556161._001151.pool.root.1
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas      1082 Nov 27 12:13 memory_monitor_summary.json
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas   2973414 Nov 27 12:13 log.47556161._001151.job.log.tgz.1
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas        95 Nov 27 12:13 pilot_heartbeat.json
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas      7957 Nov 27 12:13 heartbeat.json
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas      4824 Nov 27 12:14 pilotlog.txt
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas  16557478 Nov 27 12:14 log.47556161._001151.job.log.1
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas       353 Nov 27 12:14 output.list
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:14 runtime_log
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas  19548160 Nov 27 12:14 result.tar.gz
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas       670 Nov 27 12:14 z14KDmhR2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeEMKDmGdI4Im.diag
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 12:14 runtime_log.err
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas        30 Nov 27 12:15 wrapper_checkpoint.txt
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:15 boinc_mmap_file
[2025-11-27 12:15:18] -rw-r--r--. 1 boincer umatlas     21899 Nov 27 12:15 stderr.txt
[2025-11-27 12:15:18] HITS file was successfully produced:
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas 920988601 Nov 27 12:12 shared/HITS.pool.root.1
[2025-11-27 12:15:18]  *** Contents of shared directory: ***
[2025-11-27 12:15:18] total 1319192
[2025-11-27 12:15:18] -rw-r--r--. 2 boincer umatlas 409691071 Nov 26 00:12 ATLAS.root_0
[2025-11-27 12:15:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 12:15:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:12 input.tar.gz
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas 920988601 Nov 27 12:12 HITS.pool.root.1
[2025-11-27 12:15:18] -rw-------. 1 boincer umatlas  19548160 Nov 27 12:14 result.tar.gz
12:15:19 (449074): run_atlas exited; CPU time 207871.840266
12:15:19 (449074): called boinc_finish(0)

</stderr_txt>
]]>

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