Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:29 (456218): wrapper (7.7.26015): starting
00:12:29 (456218): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:29] Arguments: --nthreads 8
[2025-11-26 00:12:29] Threads: 8
[2025-11-26 00:12:29] Checking for CVMFS
[2025-11-26 00:12:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:30] 2.13.2.0 6884 33908 218140 153310 1 86 30987547 40960001 28111 16776704 0 198395943 99.678 165331388 36765 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:12:30] CVMFS is ok
[2025-11-26 00:12:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:30] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:30] Checking for apptainer binary...
[2025-11-26 00:12:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:30] Running /usr/bin/apptainer --version
[2025-11-26 00:12:30] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:30] c-212-8.aglt2.org
[2025-11-26 00:12:30] apptainer works
[2025-11-26 00:12:30] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:30] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:30] Starting ATLAS job with PandaID=6896716181
[2025-11-26 00:12:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:21:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:21:36] 2025-11-27 20:20:51,439 | INFO     | monitor loop #8730: job 0:6896716181 is in state 'finished'
[2025-11-27 15:21:36] 2025-11-27 20:20:51,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:21:36] 2025-11-27 20:20:51,898 | INFO     | time since job start (140854s) is within the limit (172800.0s)
[2025-11-27 15:21:36] 2025-11-27 20:20:53,904 | INFO     | time since job start (140856s) is within the limit (172800.0s)
[2025-11-27 15:21:36] 2025-11-27 20:20:53,944 | INFO     | monitor loop #8731: job 0:6896716181 is in state 'finished'
[2025-11-27 15:21:36] 2025-11-27 20:20:53,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:21:36] 2025-11-27 20:20:55,911 | INFO     | time since job start (140858s) is within the limit (172800.0s)
[2025-11-27 15:21:36] 2025-11-27 20:20:56,449 | INFO     | monitor loop #8732: job 0:6896716181 is in state 'finished'
[2025-11-27 15:21:36] 2025-11-27 20:20:56,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:21:36] 2025-11-27 20:20:58,390 | INFO     | PID=471949 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:21:36] 2025-11-27 20:20:58,390 | INFO     | .. there are 38 such processes running
[2025-11-27 15:21:36] 2025-11-27 20:20:58,964 | INFO     | monitor loop #8733: job 0:6896716181 is in state 'finished'
[2025-11-27 15:21:36] 2025-11-27 20:20:58,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:21:36] 2025-11-27 20:20:59,391 | INFO     | time since job start (140862s) is within the limit (172800.0s)
[2025-11-27 15:21:36] 2025-11-27 20:21:01,399 | INFO     | time since job start (140864s) is within the limit (172800.0s)
[2025-11-27 15:21:36] 2025-11-27 20:21:01,470 | INFO     | monitor loop #8734: job 0:6896716181 is in state 'finished'
[2025-11-27 15:21:36] 2025-11-27 20:21:01,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:21:36] 2025-11-27 20:21:01,715 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 15:21:36] 2025-11-27 20:21:01,725 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3095.0065104166674
[2025-11-27 15:21:36] 2025-11-27 20:21:01,750 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896716181/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:21:36] 2025-11-27 20:21:01,751 | INFO     | extracted standard info from prmon json
[2025-11-27 15:21:36] 2025-11-27 20:21:01,751 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:21:36] 2025-11-27 20:21:01,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:21:36] 2025-11-27 20:21:01,781 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:21:36] 2025-11-27 20:21:01,784 | INFO     | sum of square deviations: 3812334116946.194
[2025-11-27 15:21:36] 2025-11-27 20:21:01,885 | INFO     | sum of deviations: 9974988261134.363
[2025-11-27 15:21:36] 2025-11-27 20:21:01,886 | INFO     | mean x: 1764204440.182409
[2025-11-27 15:21:36] 2025-11-27 20:21:01,886 | INFO     | mean y: 2877887.3435875215
[2025-11-27 15:21:36] 2025-11-27 20:21:01,886 | INFO     | intersect: -4613170455.018694
[2025-11-27 15:21:36] 2025-11-27 20:21:01,888 | INFO     | chi2: 22.85416812594301
[2025-11-27 15:21:36] 2025-11-27 20:21:01,890 | INFO     | sum of square deviations: 3787612363282.026
[2025-11-27 15:21:36] 2025-11-27 20:21:02,003 | INFO     | sum of deviations: 10756771546674.135
[2025-11-27 15:21:36] 2025-11-27 20:21:02,003 | INFO     | mean x: 1764204287.6860616
[2025-11-27 15:21:36] 2025-11-27 20:21:02,003 | INFO     | mean y: 2882709.287885367
[2025-11-27 15:21:36] 2025-11-27 20:21:02,004 | INFO     | intersect: -5007435312.764915
[2025-11-27 15:21:36] 2025-11-27 20:21:02,005 | INFO     | chi2: 19.5379504403322
[2025-11-27 15:21:36] 2025-11-27 20:21:02,005 | INFO     | current chi2=19.5379504403322 (change=14.510340815452347 %)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,005 | INFO     | right removable region: 2302
[2025-11-27 15:21:36] 2025-11-27 20:21:02,007 | INFO     | sum of square deviations: 3787609994652.028
[2025-11-27 15:21:36] 2025-11-27 20:21:02,127 | INFO     | sum of deviations: 9098889045488.393
[2025-11-27 15:21:36] 2025-11-27 20:21:02,128 | INFO     | mean x: 1764204592.6860616
[2025-11-27 15:21:36] 2025-11-27 20:21:02,128 | INFO     | mean y: 2883290.8345636125
[2025-11-27 15:21:36] 2025-11-27 20:21:02,128 | INFO     | intersect: -4235225137.714522
[2025-11-27 15:21:36] 2025-11-27 20:21:02,130 | INFO     | chi2: 19.22379693010198
[2025-11-27 15:21:36] 2025-11-27 20:21:02,130 | INFO     | current chi2=19.22379693010198 (change=15.884941319391089 %)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,130 | INFO     | left removable region: 10
[2025-11-27 15:21:36] 2025-11-27 20:21:02,132 | INFO     | sum of square deviations: 3733596636759.9917
[2025-11-27 15:21:36] 2025-11-27 20:21:02,394 | INFO     | sum of deviations: 9497932630426.275
[2025-11-27 15:21:36] 2025-11-27 20:21:02,395 | INFO     | mean x: 1764204562.1937172
[2025-11-27 15:21:36] 2025-11-27 20:21:02,395 | INFO     | mean y: 2892264.6863001743
[2025-11-27 15:21:36] 2025-11-27 20:21:02,395 | INFO     | intersect: -4485084800.92079
[2025-11-27 15:21:36] 2025-11-27 20:21:02,417 | INFO     | chi2: 14.057973509842844
[2025-11-27 15:21:36] 2025-11-27 20:21:02,417 | INFO     | current memory leak: 2.54 B/s (using 2292 data points, chi2=14.06)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | could have reported an average CPU frequency of 3118 MHz (81 samples)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | ..............................
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | . Timing measurements:
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | . get job = 0 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | . initial setup = 3 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | . payload setup = 24 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | . stage-in = 0 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,419 | INFO     | . payload execution = 140769 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,420 | INFO     | . stage-out = 6 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,420 | INFO     | . log creation = 2 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,420 | INFO     | ..............................
[2025-11-27 15:21:36] 2025-11-27 20:21:02,783 | INFO     | 
[2025-11-27 15:21:36] 2025-11-27 20:21:02,783 | INFO     | job summary report
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | --------------------------------------------------
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | PanDA job id: 6896716181
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | task id: 47556161
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | errors: (none)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | pilot state: finished 
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | transexitcode: 0
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | exeerrorcode: 0
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | exeerrordiag: 
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | exitcode: 0
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | exitmsg: OK
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | cpuconsumptiontime: 210499 s
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | nevents: 1000
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | neventsw: 0
[2025-11-27 15:21:36] 2025-11-27 20:21:02,784 | INFO     | pid: 525329
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | pgrp: 525329
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | corecount: 8
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | event service: False
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | sizes: {0: 2284263, 11: 2284263, 17: 2284553, 22: 2284581, 140799: 2375043, 140807: 2384037, 140808: 2384221, 140826: 2384467}
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | --------------------------------------------------
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | 
[2025-11-27 15:21:36] 2025-11-27 20:21:02,785 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 15:21:36] 2025-11-27 20:21:02,941 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,941 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,941 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,942 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:21:36] 2025-11-27 20:21:02,943 | INFO     | job 6896716181 has completed (purged errors)
[2025-11-27 15:21:36] 2025-11-27 20:21:02,943 | INFO     | overall cleanup function is called
[2025-11-27 15:21:36] 2025-11-27 20:21:04,003 | INFO     | --- collectZombieJob: --- 10, [525329]
[2025-11-27 15:21:36] 2025-11-27 20:21:04,003 | INFO     | zombie collector waiting for pid 525329
[2025-11-27 15:21:36] 2025-11-27 20:21:04,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:21:36] 2025-11-27 20:21:04,004 | INFO     | collected zombie processes
[2025-11-27 15:21:36] 2025-11-27 20:21:04,004 | INFO     | will attempt to kill all subprocesses of pid=525329
[2025-11-27 15:21:36] 2025-11-27 20:21:04,781 | INFO     | process IDs to be killed: [525329] (in reverse order)
[2025-11-27 15:21:36] 2025-11-27 20:21:05,073 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:21:36] 2025-11-27 20:21:05,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:21:36] 2025-11-27 20:21:05,093 | INFO     | did not find any defunct processes belonging to 525329
[2025-11-27 15:21:36] 2025-11-27 20:21:05,119 | INFO     | did not find any defunct processes belonging to 525329
[2025-11-27 15:21:36] 2025-11-27 20:21:05,120 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:21:36] 2025-11-27 20:21:05,120 | INFO     | ready for new job
[2025-11-27 15:21:36] 2025-11-27 20:21:05,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:21:36] 2025-11-27 20:21:05,128 | INFO     | ***************************************
[2025-11-27 15:21:36] 2025-11-27 20:21:05,128 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:21:36] 2025-11-27 20:21:05,128 | INFO     | ***************************************
[2025-11-27 15:21:36] 2025-11-27 20:21:05,128 | INFO     | 
[2025-11-27 15:21:36] 2025-11-27 20:21:05,133 | INFO     | architecture information:
[2025-11-27 15:21:36] 2025-11-27 20:21:05,133 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:21:36] 2025-11-27 20:21:05,370 | INFO     | cat /etc/os-release:
[2025-11-27 15:21:36] NAME="CentOS Linux"
[2025-11-27 15:21:36] VERSION="7 (Core)"
[2025-11-27 15:21:36] ID="centos"
[2025-11-27 15:21:36] ID_LIKE="rhel fedora"
[2025-11-27 15:21:36] VERSION_ID="7"
[2025-11-27 15:21:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:21:36] ANSI_COLOR="0;31"
[2025-11-27 15:21:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:21:36] HOME_URL="https://www.centos.org/"
[2025-11-27 15:21:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:21:36] 
[2025-11-27 15:21:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:21:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:21:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:21:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:21:36] 
[2025-11-27 15:21:36] 2025-11-27 20:21:05,371 | INFO     | ***************************************
[2025-11-27 15:21:36] 2025-11-27 20:21:05,874 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 15:21:36] 2025-11-27 20:21:05,975 | INFO     | sufficient remaining disk space (122705412096 B)
[2025-11-27 15:21:36] 2025-11-27 20:21:05,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:21:36] 2025-11-27 20:21:05,976 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:21:36] 2025-11-27 20:21:05,976 | INFO     | update_server=False
[2025-11-27 15:21:36] 2025-11-27 20:21:05,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:21:36] 2025-11-27 20:21:05,976 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:21:36] 2025-11-27 20:21:05,977 | INFO     | aborting loop
[2025-11-27 15:21:36] 2025-11-27 20:21:05,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:21:36] 2025-11-27 20:21:05,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:21:36] 2025-11-27 20:21:06,677 | INFO     | all data control threads have been joined
[2025-11-27 15:21:36] 2025-11-27 20:21:06,833 | INFO     | all job control threads have been joined
[2025-11-27 15:21:36] 2025-11-27 20:21:06,987 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:06,988 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,503 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,504 | INFO     | all payload control threads have been joined
[2025-11-27 15:21:36] 2025-11-27 20:21:07,575 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,598 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,603 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,684 | INFO     | [data] control thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:21:36] 2025-11-27 20:21:07,839 | INFO     | [job] control thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:07,992 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:08,036 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:08,147 | INFO     | [job] validate thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:08,342 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:08,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:08,509 | INFO     | [payload] control thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:08,810 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:09,994 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:21:36] 2025-11-27 20:21:26,483 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:21:36] 2025-11-27 20:21:28,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370678454080)>', '<ExcThread(monitor, started 140370025359104)>']
[2025-11-27 15:21:36] 2025-11-27 20:21:33,407 | INFO     | all workflow threads have been joined
[2025-11-27 15:21:36] 2025-11-27 20:21:33,407 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:21:36] 2025-11-27 20:21:33,408 | INFO     | traces error code: 0
[2025-11-27 15:21:36] 2025-11-27 20:21:33,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:21:36] 2025-11-27 20:21:35,877 | INFO     | PID=471949 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:21:36] 2025-11-27 20:21:35,877 | INFO     | .. there are 38 such processes running
[2025-11-27 15:21:36] 2025-11-27 20:21:35,878 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:21:36] 2025-11-27 20:21:35,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:21:36] 2025-11-27 20:21:35,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:21:36] 2025-11-27 20:21:35,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:21:36] 2025-11-27 20:21:35,879 | INFO     | [monitor] control thread has ended
[2025-11-27 15:21:36] 2025-11-27 20:21:36,066 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:21:36] 2025-11-27 20:21:36,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:21:36] 2025-11-27 20:21:36,088 [wrapper] pilotpid: 471949
[2025-11-27 15:21:36] 2025-11-27 20:21:36,114 [wrapper] Pilot exit status: 0
[2025-11-27 15:21:36] 2025-11-27 20:21:36,188 [wrapper] pandaids: 6896716181
[2025-11-27 15:21:36] 2025-11-27 20:21:36,370 [wrapper] cleanup supervisor_pilot 2306375 471950
[2025-11-27 15:21:36] 2025-11-27 20:21:36,374 [wrapper] Test setup, not cleaning
[2025-11-27 15:21:36] 2025-11-27 20:21:36,377 [wrapper] apfmon messages muted
[2025-11-27 15:21:36] 2025-11-27 20:21:36,379 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:21:36] 2025-11-27 20:21:36,382 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:21:36]  *** Error codes and diagnostics ***
[2025-11-27 15:21:36]     "exeErrorCode": 0,
[2025-11-27 15:21:36]     "exeErrorDiag": "",
[2025-11-27 15:21:36]     "pilotErrorCode": 0,
[2025-11-27 15:21:36]     "pilotErrorDiag": "",
[2025-11-27 15:21:36]  *** Listing of results directory ***
[2025-11-27 15:21:36] total 1332656
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 15:21:36] -rwx------. 1 boincer umatlas     36292 Nov 25 02:54 runpilot2-wrapper.sh
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:54 queuedata.json
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:21:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-27 15:21:36] -rw-r--r--. 2 boincer umatlas 409996300 Nov 26 00:12 EVNT.47483658._002136.pool.root.1
[2025-11-27 15:21:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-27 15:21:36] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:12 input.tar.gz
[2025-11-27 15:21:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:12 pandaJob.out
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas        57 Nov 26 00:12 setup.sh.local
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas    991877 Nov 26 00:13 agis_schedconf.cvmfs.json
[2025-11-27 15:21:36] drwx------. 5 boincer umatlas      4096 Nov 26 00:13 pilot3
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:47 boinc_task_state.xml
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas 908351667 Nov 27 15:19 HITS.47556161._001195.pool.root.1
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 15:20 init_data.xml
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas      1079 Nov 27 15:20 memory_monitor_summary.json
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas   3116462 Nov 27 15:20 log.47556161._001195.job.log.tgz.1
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas      8630 Nov 27 15:21 heartbeat.json
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas       822 Nov 27 15:21 pilotlog.txt
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas        95 Nov 27 15:21 pilot_heartbeat.json
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas  18069544 Nov 27 15:21 log.47556161._001195.job.log.1
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas       353 Nov 27 15:21 output.list
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:21 runtime_log
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas  21207040 Nov 27 15:21 result.tar.gz
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 15:21 runtime_log.err
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas       669 Nov 27 15:21 7DcNDmH32h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVFMKDm7zIkLm.diag
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:21 wrapper_checkpoint.txt
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas     21848 Nov 27 15:21 stderr.txt
[2025-11-27 15:21:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:21 boinc_mmap_file
[2025-11-27 15:21:36] HITS file was successfully produced:
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas 908351667 Nov 27 15:19 shared/HITS.pool.root.1
[2025-11-27 15:21:36]  *** Contents of shared directory: ***
[2025-11-27 15:21:36] total 1308768
[2025-11-27 15:21:36] -rw-r--r--. 2 boincer umatlas 409996300 Nov 26 00:12 ATLAS.root_0
[2025-11-27 15:21:36] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:12 input.tar.gz
[2025-11-27 15:21:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas 908351667 Nov 27 15:19 HITS.pool.root.1
[2025-11-27 15:21:36] -rw-------. 1 boincer umatlas  21207040 Nov 27 15:21 result.tar.gz
15:21:38 (456218): run_atlas exited; CPU time 213273.121126
15:21:38 (456218): called boinc_finish(0)

</stderr_txt>
]]>

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