Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:08 (428842): wrapper (7.7.26015): starting
00:10:08 (428842): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:10:08] Arguments: --nthreads 9
[2025-11-26 00:10:08] Threads: 9
[2025-11-26 00:10:08] Checking for CVMFS
[2025-11-26 00:10:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:09] 2.13.2.0 6902 34673 224112 153310 3 73 24284534 40960001 25587 16776704 0 118644747 99.603 127415719 40260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:10:09] CVMFS is ok
[2025-11-26 00:10:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:09] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:09] Checking for apptainer binary...
[2025-11-26 00:10:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:09] Running /usr/bin/apptainer --version
[2025-11-26 00:10:09] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:09] c-212-6.aglt2.org
[2025-11-26 00:10:09] apptainer works
[2025-11-26 00:10:09] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:09] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:10] Starting ATLAS job with PandaID=6895386446
[2025-11-26 00:10:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:08:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:08:50] 2025-11-27 13:07:51,363 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 08:08:50] 2025-11-27 13:07:51,363 | INFO     | log transfer has been attempted: DONE
[2025-11-27 08:08:50] 2025-11-27 13:07:51,364 | INFO     | job 6895386446 has finished - writing final server update
[2025-11-27 08:08:50] 2025-11-27 13:07:51,364 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 08:08:50] 2025-11-27 13:07:51,364 | INFO     | executing command: lscpu
[2025-11-27 08:08:50] 2025-11-27 13:07:51,485 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 08:08:50] 2025-11-27 13:07:51,824 | INFO     | monitor loop #6533: job 0:6895386446 is in state 'finished'
[2025-11-27 08:08:50] 2025-11-27 13:07:51,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:08:50] 2025-11-27 13:07:52,941 | INFO     | time since job start (114997s) is within the limit (172800.0s)
[2025-11-27 08:08:50] 2025-11-27 13:07:54,330 | INFO     | monitor loop #6534: job 0:6895386446 is in state 'finished'
[2025-11-27 08:08:50] 2025-11-27 13:07:54,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:08:50] 2025-11-27 13:07:54,947 | INFO     | time since job start (114999s) is within the limit (172800.0s)
[2025-11-27 08:08:50] 2025-11-27 13:07:56,765 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:08:50] 2025-11-27 13:07:56,770 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3008.510999999999
[2025-11-27 08:08:50] 2025-11-27 13:07:56,785 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6895386446/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:08:50] 2025-11-27 13:07:56,785 | INFO     | extracted standard info from prmon json
[2025-11-27 08:08:50] 2025-11-27 13:07:56,785 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:08:50] 2025-11-27 13:07:56,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:08:50] 2025-11-27 13:07:56,810 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:08:50] 2025-11-27 13:07:56,813 | INFO     | sum of square deviations: 2070302316940.902
[2025-11-27 08:08:50] 2025-11-27 13:07:56,849 | INFO     | monitor loop #6535: job 0:6895386446 is in state 'finished'
[2025-11-27 08:08:50] 2025-11-27 13:07:56,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:08:50] 2025-11-27 13:07:56,897 | INFO     | sum of deviations: 12024472399496.559
[2025-11-27 08:08:50] 2025-11-27 13:07:56,897 | INFO     | mean x: 1764191427.827403
[2025-11-27 08:08:50] 2025-11-27 13:07:56,898 | INFO     | mean y: 2980329.690918747
[2025-11-27 08:08:50] 2025-11-27 13:07:56,898 | INFO     | intersect: -10243576879.733576
[2025-11-27 08:08:50] 2025-11-27 13:07:56,900 | INFO     | chi2: 18.631118824424668
[2025-11-27 08:08:50] 2025-11-27 13:07:56,902 | INFO     | sum of square deviations: 2053856728278.9348
[2025-11-27 08:08:50] 2025-11-27 13:07:56,969 | INFO     | time since job start (115001s) is within the limit (172800.0s)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,002 | INFO     | sum of deviations: 12517177410497.973
[2025-11-27 08:08:50] 2025-11-27 13:07:57,002 | INFO     | mean x: 1764191275.3391907
[2025-11-27 08:08:50] 2025-11-27 13:07:57,002 | INFO     | mean y: 2984896.0330138444
[2025-11-27 08:08:50] 2025-11-27 13:07:57,002 | INFO     | intersect: -10748833804.572216
[2025-11-27 08:08:50] 2025-11-27 13:07:57,008 | INFO     | chi2: 16.57401783546565
[2025-11-27 08:08:50] 2025-11-27 13:07:57,008 | INFO     | current chi2=16.57401783546565 (change=11.0412101835894 %)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,008 | INFO     | right removable region: 1877
[2025-11-27 08:08:50] 2025-11-27 13:07:57,010 | INFO     | sum of square deviations: 2053851412721.5742
[2025-11-27 08:08:50] 2025-11-27 13:07:57,147 | INFO     | sum of deviations: 11212160107182.414
[2025-11-27 08:08:50] 2025-11-27 13:07:57,147 | INFO     | mean x: 1764191580.3402555
[2025-11-27 08:08:50] 2025-11-27 13:07:57,147 | INFO     | mean y: 2987859.9930777424
[2025-11-27 08:08:50] 2025-11-27 13:07:57,147 | INFO     | intersect: -9627893096.632189
[2025-11-27 08:08:50] 2025-11-27 13:07:57,149 | INFO     | chi2: 13.974096748554253
[2025-11-27 08:08:50] 2025-11-27 13:07:57,149 | INFO     | current chi2=13.974096748554253 (change=24.995933522603277 %)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,151 | INFO     | left removable region: 10
[2025-11-27 08:08:50] 2025-11-27 13:07:57,152 | INFO     | sum of square deviations: 2017972881616.523
[2025-11-27 08:08:50] 2025-11-27 13:07:57,223 | INFO     | sum of deviations: 11015000502050.879
[2025-11-27 08:08:50] 2025-11-27 13:07:57,223 | INFO     | mean x: 1764191549.8660953
[2025-11-27 08:08:50] 2025-11-27 13:07:57,223 | INFO     | mean y: 2998598.4515265133
[2025-11-27 08:08:50] 2025-11-27 13:07:57,223 | INFO     | intersect: -9626749642.725157
[2025-11-27 08:08:50] 2025-11-27 13:07:57,225 | INFO     | chi2: 8.850219568688479
[2025-11-27 08:08:50] 2025-11-27 13:07:57,225 | INFO     | current memory leak: 5.46 B/s (using 1867 data points, chi2=8.85)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,226 | INFO     | could have reported an average CPU frequency of 3053 MHz (66 samples)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,226 | INFO     | ..............................
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . Timing measurements:
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . get job = 0 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . initial setup = 4 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . payload setup = 50 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . stage-in = 0 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . payload execution = 114872 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . stage-out = 4 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | . log creation = 0 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,227 | INFO     | ..............................
[2025-11-27 08:08:50] 2025-11-27 13:07:57,360 | INFO     | 
[2025-11-27 08:08:50] 2025-11-27 13:07:57,361 | INFO     | job summary report
[2025-11-27 08:08:50] 2025-11-27 13:07:57,361 | INFO     | --------------------------------------------------
[2025-11-27 08:08:50] 2025-11-27 13:07:57,361 | INFO     | PanDA job id: 6895386446
[2025-11-27 08:08:50] 2025-11-27 13:07:57,361 | INFO     | task id: 47556149
[2025-11-27 08:08:50] 2025-11-27 13:07:57,364 | INFO     | errors: (none)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:08:50] 2025-11-27 13:07:57,365 | INFO     | pilot state: finished 
[2025-11-27 08:08:50] 2025-11-27 13:07:57,366 | INFO     | transexitcode: 0
[2025-11-27 08:08:50] 2025-11-27 13:07:57,366 | INFO     | exeerrorcode: 0
[2025-11-27 08:08:50] 2025-11-27 13:07:57,366 | INFO     | exeerrordiag: 
[2025-11-27 08:08:50] 2025-11-27 13:07:57,366 | INFO     | exitcode: 0
[2025-11-27 08:08:50] 2025-11-27 13:07:57,366 | INFO     | exitmsg: OK
[2025-11-27 08:08:50] 2025-11-27 13:07:57,367 | INFO     | cpuconsumptiontime: 212267 s
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | nevents: 1000
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | neventsw: 0
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | pid: 462468
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | pgrp: 462468
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | corecount: 9
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | event service: False
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | sizes: {0: 2284314, 1: 2284314, 12: 2284342, 23: 2284370, 31: 2284660, 34: 2284688, 114926: 2362199, 114927: 2362198, 114933: 2371304, 114941: 2371494}
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | --------------------------------------------------
[2025-11-27 08:08:50] 2025-11-27 13:07:57,370 | INFO     | 
[2025-11-27 08:08:50] 2025-11-27 13:07:57,371 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 08:08:50] 2025-11-27 13:07:57,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,494 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:08:50] 2025-11-27 13:07:57,495 | INFO     | job 6895386446 has completed (purged errors)
[2025-11-27 08:08:50] 2025-11-27 13:07:57,495 | INFO     | overall cleanup function is called
[2025-11-27 08:08:50] 2025-11-27 13:07:58,513 | INFO     | PID=438905 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:08:50] 2025-11-27 13:07:58,513 | INFO     | .. there are 25 such processes running
[2025-11-27 08:08:50] 2025-11-27 13:07:58,569 | INFO     | --- collectZombieJob: --- 10, [462468]
[2025-11-27 08:08:50] 2025-11-27 13:07:58,569 | INFO     | zombie collector waiting for pid 462468
[2025-11-27 08:08:50] 2025-11-27 13:07:58,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:08:50] 2025-11-27 13:07:58,569 | INFO     | collected zombie processes
[2025-11-27 08:08:50] 2025-11-27 13:07:58,569 | INFO     | will attempt to kill all subprocesses of pid=462468
[2025-11-27 08:08:50] 2025-11-27 13:07:59,003 | INFO     | process IDs to be killed: [462468] (in reverse order)
[2025-11-27 08:08:50] 2025-11-27 13:07:59,142 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:08:50] 2025-11-27 13:07:59,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:08:50] 2025-11-27 13:07:59,158 | INFO     | did not find any defunct processes belonging to 462468
[2025-11-27 08:08:50] 2025-11-27 13:07:59,172 | INFO     | did not find any defunct processes belonging to 462468
[2025-11-27 08:08:50] 2025-11-27 13:07:59,173 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:08:50] 2025-11-27 13:07:59,173 | INFO     | ready for new job
[2025-11-27 08:08:50] 2025-11-27 13:07:59,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:08:50] 2025-11-27 13:07:59,180 | INFO     | ***************************************
[2025-11-27 08:08:50] 2025-11-27 13:07:59,180 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:08:50] 2025-11-27 13:07:59,181 | INFO     | ***************************************
[2025-11-27 08:08:50] 2025-11-27 13:07:59,181 | INFO     | 
[2025-11-27 08:08:50] 2025-11-27 13:07:59,187 | INFO     | architecture information:
[2025-11-27 08:08:50] 2025-11-27 13:07:59,187 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:08:50] 2025-11-27 13:07:59,209 | INFO     | cat /etc/os-release:
[2025-11-27 08:08:50] NAME="CentOS Linux"
[2025-11-27 08:08:50] VERSION="7 (Core)"
[2025-11-27 08:08:50] ID="centos"
[2025-11-27 08:08:50] ID_LIKE="rhel fedora"
[2025-11-27 08:08:50] VERSION_ID="7"
[2025-11-27 08:08:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:08:50] ANSI_COLOR="0;31"
[2025-11-27 08:08:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:08:50] HOME_URL="https://www.centos.org/"
[2025-11-27 08:08:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:08:50] 
[2025-11-27 08:08:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:08:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:08:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:08:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:08:50] 
[2025-11-27 08:08:50] 2025-11-27 13:07:59,209 | INFO     | ***************************************
[2025-11-27 08:08:50] 2025-11-27 13:07:59,712 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 08:08:50] 2025-11-27 13:07:59,736 | INFO     | sufficient remaining disk space (121523666944 B)
[2025-11-27 08:08:50] 2025-11-27 13:07:59,736 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:08:50] 2025-11-27 13:07:59,736 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:08:50] 2025-11-27 13:07:59,736 | INFO     | update_server=False
[2025-11-27 08:08:50] 2025-11-27 13:07:59,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:08:50] 2025-11-27 13:07:59,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:08:50] 2025-11-27 13:07:59,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:08:50] 2025-11-27 13:08:00,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:08:50] 2025-11-27 13:08:00,364 | INFO     | aborting loop
[2025-11-27 08:08:50] 2025-11-27 13:08:00,600 | INFO     | all data control threads have been joined
[2025-11-27 08:08:50] 2025-11-27 13:08:00,722 | INFO     | all payload control threads have been joined
[2025-11-27 08:08:50] 2025-11-27 13:08:00,742 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:00,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,017 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,064 | INFO     | [job] validate thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,102 | INFO     | all job control threads have been joined
[2025-11-27 08:08:50] 2025-11-27 13:08:01,370 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,516 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,605 | INFO     | [data] control thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,675 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,727 | INFO     | [payload] control thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,742 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,889 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:01,938 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:02,107 | INFO     | [job] control thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:02,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:08:50] 2025-11-27 13:08:03,356 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:03,743 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:08:50] 2025-11-27 13:08:31,193 | INFO     | PID=438905 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 08:08:50] 2025-11-27 13:08:31,193 | INFO     | .. there are 25 such processes running
[2025-11-27 08:08:50] 2025-11-27 13:08:31,194 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:08:50] 2025-11-27 13:08:31,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:08:50] 2025-11-27 13:08:31,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:08:50] 2025-11-27 13:08:43,383 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:08:50] 2025-11-27 13:08:45,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140568391698240)>', '<ExcThread(monitor, started 140567761643264)>']
[2025-11-27 08:08:50] 2025-11-27 13:08:45,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:08:50] 2025-11-27 13:08:45,282 | INFO     | [monitor] control thread has ended
[2025-11-27 08:08:50] 2025-11-27 13:08:50,104 | INFO     | all workflow threads have been joined
[2025-11-27 08:08:50] 2025-11-27 13:08:50,104 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:08:50] 2025-11-27 13:08:50,104 | INFO     | traces error code: 0
[2025-11-27 08:08:50] 2025-11-27 13:08:50,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:08:50] 2025-11-27 13:08:50,360 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:08:50] 2025-11-27 13:08:50,362 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:08:50] 2025-11-27 13:08:50,369 [wrapper] pilotpid: 438905
[2025-11-27 08:08:50] 2025-11-27 13:08:50,382 [wrapper] Pilot exit status: 0
[2025-11-27 08:08:50] 2025-11-27 13:08:50,425 [wrapper] pandaids: 6895386446
[2025-11-27 08:08:50] 2025-11-27 13:08:50,600 [wrapper] cleanup supervisor_pilot 2337554 438906
[2025-11-27 08:08:50] 2025-11-27 13:08:50,605 [wrapper] Test setup, not cleaning
[2025-11-27 08:08:50] 2025-11-27 13:08:50,608 [wrapper] apfmon messages muted
[2025-11-27 08:08:50] 2025-11-27 13:08:50,612 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:08:50] 2025-11-27 13:08:50,616 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:08:50]  *** Error codes and diagnostics ***
[2025-11-27 08:08:50]     "exeErrorCode": 0,
[2025-11-27 08:08:50]     "exeErrorDiag": "",
[2025-11-27 08:08:50]     "pilotErrorCode": 0,
[2025-11-27 08:08:50]     "pilotErrorDiag": "",
[2025-11-27 08:08:50]  *** Listing of results directory ***
[2025-11-27 08:08:50] total 1322880
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-27 08:08:50] -rwx------. 1 boincer umatlas     36292 Nov 24 00:17 runpilot2-wrapper.sh
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:17 queuedata.json
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:08:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-27 08:08:50] -rw-r--r--. 2 boincer umatlas 409564027 Nov 26 00:10 EVNT.47483658._001243.pool.root.1
[2025-11-27 08:08:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-27 08:08:50] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:10 input.tar.gz
[2025-11-27 08:08:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:10 pandaJob.out
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas        57 Nov 26 00:10 setup.sh.local
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-27 08:08:50] drwx------. 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:02 boinc_task_state.xml
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 08:04 init_data.xml
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas 907030803 Nov 27 08:07 HITS.47556149._002299.pool.root.1
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas      1066 Nov 27 08:07 memory_monitor_summary.json
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas   2885903 Nov 27 08:07 log.47556149._002299.job.log.tgz.1
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas      8625 Nov 27 08:07 heartbeat.json
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas        95 Nov 27 08:08 pilot_heartbeat.json
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:08 boinc_mmap_file
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:08 wrapper_checkpoint.txt
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas      4824 Nov 27 08:08 pilotlog.txt
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas  14168118 Nov 27 08:08 log.47556149._002299.job.log.1
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas       353 Nov 27 08:08 output.list
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:08 runtime_log
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas  17070080 Nov 27 08:08 result.tar.gz
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 08:08 runtime_log.err
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas       667 Nov 27 08:08 jw0MDm67dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWTLKDmkI13Do.diag
[2025-11-27 08:08:50] -rw-r--r--. 1 boincer umatlas     21882 Nov 27 08:08 stderr.txt
[2025-11-27 08:08:50] HITS file was successfully produced:
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas 907030803 Nov 27 08:07 shared/HITS.pool.root.1
[2025-11-27 08:08:50]  *** Contents of shared directory: ***
[2025-11-27 08:08:50] total 1303020
[2025-11-27 08:08:50] -rw-r--r--. 2 boincer umatlas 409564027 Nov 26 00:10 ATLAS.root_0
[2025-11-27 08:08:50] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:10 input.tar.gz
[2025-11-27 08:08:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas 907030803 Nov 27 08:07 HITS.pool.root.1
[2025-11-27 08:08:50] -rw-------. 1 boincer umatlas  17070080 Nov 27 08:08 result.tar.gz
08:08:52 (428842): run_atlas exited; CPU time 213664.100611
08:08:52 (428842): called boinc_finish(0)

</stderr_txt>
]]>

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