Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:52 (3166108): wrapper (7.7.26015): starting
00:01:52 (3166108): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:52] Arguments: --nthreads 9
[2025-11-27 00:01:52] Threads: 9
[2025-11-27 00:01:52] Checking for CVMFS
[2025-11-27 00:01:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:54] 2.13.3.0 10978 30997 351200 153347 1 64 28016226 40960001 17511 16776704 0 70554525 99.584 93887767 38972 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:54] CVMFS is ok
[2025-11-27 00:01:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:54] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:54] Checking for apptainer binary...
[2025-11-27 00:01:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:54] Running /usr/bin/apptainer --version
[2025-11-27 00:01:55] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:56] c6-8-12-1.aglt2.org
[2025-11-27 00:01:56] apptainer works
[2025-11-27 00:01:56] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:56] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:56] Starting ATLAS job with PandaID=6894239159
[2025-11-27 00:01:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:23:58]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:23:58] 2025-11-28 00:23:23,770 | INFO     | time since job start (69583s) is within the limit (172800.0s)
[2025-11-27 19:23:58] 2025-11-28 00:23:23,961 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:23:58] 2025-11-28 00:23:23,969 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2782.16032142857
[2025-11-27 19:23:58] 2025-11-28 00:23:23,978 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894239159/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:23:58] 2025-11-28 00:23:23,979 | INFO     | extracted standard info from prmon json
[2025-11-27 19:23:58] 2025-11-28 00:23:23,979 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:23:58] 2025-11-28 00:23:23,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:23:58] 2025-11-28 00:23:23,980 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 19:23:58] 2025-11-28 00:23:23,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 19:23:58] 2025-11-28 00:23:23,998 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:23:58] 2025-11-28 00:23:24,000 | INFO     | sum of square deviations: 455784483587.42017
[2025-11-27 19:23:58] 2025-11-28 00:23:24,023 | INFO     | sum of deviations: 1088175145098.1782
[2025-11-27 19:23:58] 2025-11-28 00:23:24,023 | INFO     | mean x: 1764254686.7387862
[2025-11-27 19:23:58] 2025-11-28 00:23:24,023 | INFO     | mean y: 2657132.6807387862
[2025-11-27 19:23:58] 2025-11-28 00:23:24,023 | INFO     | intersect: -4209461025.9311604
[2025-11-27 19:23:58] 2025-11-28 00:23:24,025 | INFO     | chi2: 4.68283441865125
[2025-11-27 19:23:58] 2025-11-28 00:23:24,026 | INFO     | sum of square deviations: 449798153119.67865
[2025-11-27 19:23:58] 2025-11-28 00:23:24,048 | INFO     | sum of deviations: 1157115786399.9045
[2025-11-27 19:23:58] 2025-11-28 00:23:24,048 | INFO     | mean x: 1764254534.2420495
[2025-11-27 19:23:58] 2025-11-28 00:23:24,048 | INFO     | mean y: 2658881.8507067137
[2025-11-27 19:23:58] 2025-11-28 00:23:24,048 | INFO     | intersect: -4535925277.822165
[2025-11-27 19:23:58] 2025-11-28 00:23:24,049 | INFO     | chi2: 3.9911210656674903
[2025-11-27 19:23:58] 2025-11-28 00:23:24,049 | INFO     | current chi2=3.9911210656674903 (change=14.77125371396299 %)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,049 | INFO     | right removable region: 1131
[2025-11-27 19:23:58] 2025-11-28 00:23:24,051 | INFO     | sum of square deviations: 449797709833.1622
[2025-11-27 19:23:58] 2025-11-28 00:23:24,116 | INFO     | sum of deviations: 732625987041.3486
[2025-11-27 19:23:58] 2025-11-28 00:23:24,117 | INFO     | mean x: 1764254839.241166
[2025-11-27 19:23:58] 2025-11-28 00:23:24,117 | INFO     | mean y: 2666185.734982332
[2025-11-27 19:23:58] 2025-11-28 00:23:24,117 | INFO     | intersect: -2870934356.764357
[2025-11-27 19:23:58] 2025-11-28 00:23:24,119 | INFO     | chi2: 1.588974766772687
[2025-11-27 19:23:58] 2025-11-28 00:23:24,119 | INFO     | current chi2=1.588974766772687 (change=66.06809840544516 %)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,159 | INFO     | sum of square deviations: 443863588350.89105
[2025-11-27 19:23:58] 2025-11-28 00:23:24,203 | INFO     | sum of deviations: 587091432203.0085
[2025-11-27 19:23:58] 2025-11-28 00:23:24,203 | INFO     | mean x: 1764254991.743567
[2025-11-27 19:23:58] 2025-11-28 00:23:24,203 | INFO     | mean y: 2669923.346051464
[2025-11-27 19:23:58] 2025-11-28 00:23:24,203 | INFO     | intersect: -2330882584.807005
[2025-11-27 19:23:58] 2025-11-28 00:23:24,209 | INFO     | chi2: 1.0740259023176595
[2025-11-27 19:23:58] 2025-11-28 00:23:24,209 | INFO     | current chi2=1.0740259023176595 (change=32.40761749168131 %)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,210 | INFO     | sum of square deviations: 437981886700.1072
[2025-11-27 19:23:58] 2025-11-28 00:23:24,290 | INFO     | sum of deviations: 503163358617.62573
[2025-11-27 19:23:58] 2025-11-28 00:23:24,291 | INFO     | mean x: 1764255144.2459893
[2025-11-27 19:23:58] 2025-11-28 00:23:24,291 | INFO     | mean y: 2672098.4723707666
[2025-11-27 19:23:58] 2025-11-28 00:23:24,291 | INFO     | intersect: -2024143554.8540947
[2025-11-27 19:23:58] 2025-11-28 00:23:24,292 | INFO     | chi2: 0.9210100871426818
[2025-11-27 19:23:58] 2025-11-28 00:23:24,292 | INFO     | current chi2=0.9210100871426818 (change=14.246939002568013 %)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,292 | INFO     | left removable region: 30
[2025-11-27 19:23:58] 2025-11-28 00:23:24,302 | INFO     | sum of square deviations: 413846441278.25073
[2025-11-27 19:23:58] 2025-11-28 00:23:24,365 | INFO     | sum of deviations: 451592185188.3211
[2025-11-27 19:23:58] 2025-11-28 00:23:24,365 | INFO     | mean x: 1764255418.7574933
[2025-11-27 19:23:58] 2025-11-28 00:23:24,366 | INFO     | mean y: 2677110.2034514076
[2025-11-27 19:23:58] 2025-11-28 00:23:24,366 | INFO     | intersect: -1922490972.252895
[2025-11-27 19:23:58] 2025-11-28 00:23:24,367 | INFO     | chi2: 0.07931060172563073
[2025-11-27 19:23:58] 2025-11-28 00:23:24,367 | INFO     | current memory leak: 1.09 B/s (using 1101 data points, chi2=0.08)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | could have reported an average CPU frequency of 2758 MHz (41 samples)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | ..............................
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . Timing measurements:
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . get job = 0 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . initial setup = 9 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . payload setup = 68 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . stage-in = 0 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . payload execution = 69388 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,377 | INFO     | . stage-out = 3 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,378 | INFO     | . log creation = 0 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,378 | INFO     | ..............................
[2025-11-27 19:23:58] 2025-11-28 00:23:24,693 | INFO     | 
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | job summary report
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | --------------------------------------------------
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | PanDA job id: 6894239159
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | task id: 47523939
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | errors: (none)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | pilot state: finished 
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | transexitcode: 0
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | exeerrorcode: 0
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | exeerrordiag: 
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | exitcode: 0
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | exitmsg: OK
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | cpuconsumptiontime: 116025 s
[2025-11-27 19:23:58] 2025-11-28 00:23:24,694 | INFO     | nevents: 400
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | neventsw: 0
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | pid: 3182472
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | pgrp: 3182472
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | corecount: 9
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | event service: False
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | sizes: {0: 2283775, 1: 2283775, 2: 2284002, 13: 2284002, 24: 2284058, 36: 2284086, 47: 2284504, 48: 2284560, 59: 2284588, 69458: 2339665, 69462: 2348999, 69479: 23
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | --------------------------------------------------
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | 
[2025-11-27 19:23:58] 2025-11-28 00:23:24,695 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 19:23:58] 2025-11-28 00:23:24,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | job 6894239159 has completed (purged errors)
[2025-11-27 19:23:58] 2025-11-28 00:23:24,730 | INFO     | overall cleanup function is called
[2025-11-27 19:23:58] 2025-11-28 00:23:25,754 | INFO     | --- collectZombieJob: --- 10, [3182472]
[2025-11-27 19:23:58] 2025-11-28 00:23:25,754 | INFO     | zombie collector waiting for pid 3182472
[2025-11-27 19:23:58] 2025-11-28 00:23:25,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:23:58] 2025-11-28 00:23:25,754 | INFO     | collected zombie processes
[2025-11-27 19:23:58] 2025-11-28 00:23:25,754 | INFO     | will attempt to kill all subprocesses of pid=3182472
[2025-11-27 19:23:58] 2025-11-28 00:23:26,374 | INFO     | process IDs to be killed: [3182472] (in reverse order)
[2025-11-27 19:23:58] 2025-11-28 00:23:26,477 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:23:58] 2025-11-28 00:23:26,478 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:23:58] 2025-11-28 00:23:26,490 | INFO     | did not find any defunct processes belonging to 3182472
[2025-11-27 19:23:58] 2025-11-28 00:23:26,506 | INFO     | did not find any defunct processes belonging to 3182472
[2025-11-27 19:23:58] 2025-11-28 00:23:26,510 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:23:58] 2025-11-28 00:23:26,511 | INFO     | ready for new job
[2025-11-27 19:23:58] 2025-11-28 00:23:26,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:23:58] 2025-11-28 00:23:26,536 | INFO     | ***************************************
[2025-11-27 19:23:58] 2025-11-28 00:23:26,536 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:23:58] 2025-11-28 00:23:26,537 | INFO     | ***************************************
[2025-11-27 19:23:58] 2025-11-28 00:23:26,537 | INFO     | 
[2025-11-27 19:23:58] 2025-11-28 00:23:26,541 | INFO     | architecture information:
[2025-11-27 19:23:58] 2025-11-28 00:23:26,541 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:23:58] 2025-11-28 00:23:26,566 | INFO     | cat /etc/os-release:
[2025-11-27 19:23:58] NAME="CentOS Linux"
[2025-11-27 19:23:58] VERSION="7 (Core)"
[2025-11-27 19:23:58] ID="centos"
[2025-11-27 19:23:58] ID_LIKE="rhel fedora"
[2025-11-27 19:23:58] VERSION_ID="7"
[2025-11-27 19:23:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:23:58] ANSI_COLOR="0;31"
[2025-11-27 19:23:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:23:58] HOME_URL="https://www.centos.org/"
[2025-11-27 19:23:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:23:58] 
[2025-11-27 19:23:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:23:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:23:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:23:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:23:58] 
[2025-11-27 19:23:58] 2025-11-28 00:23:26,567 | INFO     | ***************************************
[2025-11-27 19:23:58] 2025-11-28 00:23:27,070 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 19:23:58] 2025-11-28 00:23:27,100 | INFO     | sufficient remaining disk space (55895392256 B)
[2025-11-27 19:23:58] 2025-11-28 00:23:27,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:23:58] 2025-11-28 00:23:27,101 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:23:58] 2025-11-28 00:23:27,101 | INFO     | update_server=False
[2025-11-27 19:23:58] 2025-11-28 00:23:27,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:23:58] 2025-11-28 00:23:27,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:23:58] 2025-11-28 00:23:27,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:23:58] 2025-11-28 00:23:27,101 | INFO     | aborting loop
[2025-11-27 19:23:58] 2025-11-28 00:23:27,114 | INFO     | all job control threads have been joined
[2025-11-27 19:23:58] 2025-11-28 00:23:27,264 | INFO     | all data control threads have been joined
[2025-11-27 19:23:58] 2025-11-28 00:23:27,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:23:58] 2025-11-28 00:23:28,092 | INFO     | all payload control threads have been joined
[2025-11-27 19:23:58] 2025-11-28 00:23:28,107 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,108 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,121 | INFO     | [job] control thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,209 | INFO     | [job] validate thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,238 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,270 | INFO     | [data] control thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,340 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:28,817 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:29,097 | INFO     | [payload] control thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:29,107 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:29,487 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:29,534 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:29,694 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:29,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:23:58] 2025-11-28 00:23:30,713 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:31,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:23:58] 2025-11-28 00:23:52,948 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:23:58] 2025-11-28 00:23:53,058 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203292153664)>', '<ExcThread(monitor, started 140202278377216)>']
[2025-11-27 19:23:58] 2025-11-28 00:23:57,518 | INFO     | PID=3170832 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:23:58] 2025-11-28 00:23:57,518 | INFO     | .. there are 17 such processes running
[2025-11-27 19:23:58] 2025-11-28 00:23:57,519 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:23:58] 2025-11-28 00:23:57,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:23:58] 2025-11-28 00:23:57,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:23:58] 2025-11-28 00:23:57,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:23:58] 2025-11-28 00:23:57,520 | INFO     | [monitor] control thread has ended
[2025-11-27 19:23:58] 2025-11-28 00:23:58,084 | INFO     | all workflow threads have been joined
[2025-11-27 19:23:58] 2025-11-28 00:23:58,084 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:23:58] 2025-11-28 00:23:58,099 | INFO     | traces error code: 0
[2025-11-27 19:23:58] 2025-11-28 00:23:58,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:23:58] 2025-11-28 00:23:58,352 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:23:58] 2025-11-28 00:23:58,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:23:58] 2025-11-28 00:23:58,358 [wrapper] pilotpid: 3170832
[2025-11-27 19:23:58] 2025-11-28 00:23:58,361 [wrapper] Pilot exit status: 0
[2025-11-27 19:23:58] 2025-11-28 00:23:58,386 [wrapper] pandaids: 6894239159
[2025-11-27 19:23:58] 2025-11-28 00:23:58,462 [wrapper] cleanup supervisor_pilot 1740220 3170833
[2025-11-27 19:23:58] 2025-11-28 00:23:58,465 [wrapper] Test setup, not cleaning
[2025-11-27 19:23:58] 2025-11-28 00:23:58,469 [wrapper] apfmon messages muted
[2025-11-27 19:23:58] 2025-11-28 00:23:58,473 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:23:58] 2025-11-28 00:23:58,486 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:23:58]  *** Error codes and diagnostics ***
[2025-11-27 19:23:58]     "exeErrorCode": 0,
[2025-11-27 19:23:58]     "exeErrorDiag": "",
[2025-11-27 19:23:58]     "pilotErrorCode": 0,
[2025-11-27 19:23:58]     "pilotErrorDiag": "",
[2025-11-27 19:23:58]  *** Listing of results directory ***
[2025-11-27 19:23:58] total 635716
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:12 queuedata.json
[2025-11-27 19:23:58] -rwx------. 1 boincer umatlas     36292 Nov 25 02:14 runpilot2-wrapper.sh
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:23:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 19:23:58] -rw-r--r--. 2 boincer umatlas 297259225 Nov 27 00:01 EVNT.47523935._000002.pool.root.1
[2025-11-27 19:23:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 19:23:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 19:23:58] -rw-r--r--. 2 boincer umatlas    589951 Nov 27 00:01 input.tar.gz
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas      2609 Nov 27 00:01 pandaJob.out
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 19:23:58] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas 331342642 Nov 27 19:21 HITS.47523939._000033.pool.root.1
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas       532 Nov 27 19:21 boinc_task_state.xml
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 19:21 init_data.xml
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas      1044 Nov 27 19:23 memory_monitor_summary.json
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas   1153632 Nov 27 19:23 log.47523939._000033.job.log.tgz.1
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas      7823 Nov 27 19:23 heartbeat.json
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:23 boinc_mmap_file
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:23 wrapper_checkpoint.txt
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas        95 Nov 27 19:23 pilot_heartbeat.json
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas      4824 Nov 27 19:23 pilotlog.txt
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas   8070273 Nov 27 19:23 log.47523939._000033.job.log.1
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas       357 Nov 27 19:23 output.list
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:23 runtime_log
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas   9246720 Nov 27 19:23 result.tar.gz
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 19:23 runtime_log.err
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas       660 Nov 27 19:23 GYyMDm8Q2h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4NJKDmg8pGGn.diag
[2025-11-27 19:23:58] -rw-r--r--. 1 boincer umatlas     21331 Nov 27 19:23 stderr.txt
[2025-11-27 19:23:58] HITS file was successfully produced:
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas 331342642 Nov 27 19:21 shared/HITS.pool.root.1
[2025-11-27 19:23:58]  *** Contents of shared directory: ***
[2025-11-27 19:23:58] total 623508
[2025-11-27 19:23:58] -rw-r--r--. 2 boincer umatlas 297259225 Nov 27 00:01 ATLAS.root_0
[2025-11-27 19:23:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 19:23:58] -rw-r--r--. 2 boincer umatlas    589951 Nov 27 00:01 input.tar.gz
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas 331342642 Nov 27 19:21 HITS.pool.root.1
[2025-11-27 19:23:58] -rw-------. 1 boincer umatlas   9246720 Nov 27 19:23 result.tar.gz
19:24:00 (3166108): run_atlas exited; CPU time 118761.477590
19:24:00 (3166108): called boinc_finish(0)

</stderr_txt>
]]>

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