Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:11 (3638794): wrapper (7.7.26015): starting
00:10:11 (3638794): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:10:11] Arguments: --nthreads 9
[2025-11-26 00:10:11] Threads: 9
[2025-11-26 00:10:11] Checking for CVMFS
[2025-11-26 00:10:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:13] 2.13.3.0 10978 29565 347520 153309 2 269 21690961 40960001 15790 16776704 0 67467127 99.588 89855221 39265 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:10:13] CVMFS is ok
[2025-11-26 00:10:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:13] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:13] Checking for apptainer binary...
[2025-11-26 00:10:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:13] Running /usr/bin/apptainer --version
[2025-11-26 00:10:14] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:14] c6-8-12-1.aglt2.org
[2025-11-26 00:10:14] apptainer works
[2025-11-26 00:10:14] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:14] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:14] Starting ATLAS job with PandaID=6895337449
[2025-11-26 00:10:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:58:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:58:32] 2025-11-27 07:55:59,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:58:32] 2025-11-27 07:56:01,417 | INFO     | time since job start (96276s) is within the limit (172800.0s)
[2025-11-27 02:58:32] 2025-11-27 07:56:02,065 | INFO     | monitor loop #5445: job 0:6895337449 is in state 'finished'
[2025-11-27 02:58:32] 2025-11-27 07:56:02,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:58:32] 2025-11-27 07:56:03,426 | INFO     | time since job start (96278s) is within the limit (172800.0s)
[2025-11-27 02:58:32] 2025-11-27 07:56:04,570 | INFO     | monitor loop #5446: job 0:6895337449 is in state 'finished'
[2025-11-27 02:58:32] 2025-11-27 07:56:04,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:58:32] 2025-11-27 07:56:05,434 | INFO     | time since job start (96280s) is within the limit (172800.0s)
[2025-11-27 02:58:32] 2025-11-27 07:56:07,075 | INFO     | monitor loop #5447: job 0:6895337449 is in state 'finished'
[2025-11-27 02:58:32] 2025-11-27 07:56:07,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:58:32] 2025-11-27 07:56:07,443 | INFO     | time since job start (96282s) is within the limit (172800.0s)
[2025-11-27 02:58:32] 2025-11-27 07:56:09,449 | INFO     | time since job start (96284s) is within the limit (172800.0s)
[2025-11-27 02:58:32] 2025-11-27 07:56:09,580 | INFO     | monitor loop #5448: job 0:6895337449 is in state 'finished'
[2025-11-27 02:58:32] 2025-11-27 07:56:09,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:58:32] 2025-11-27 07:56:10,328 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:58:32] 2025-11-27 07:56:10,360 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2973.8642142857134
[2025-11-27 02:58:32] 2025-11-27 07:56:10,446 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895337449/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:58:32] 2025-11-27 07:56:10,446 | INFO     | extracted standard info from prmon json
[2025-11-27 02:58:32] 2025-11-27 07:56:10,446 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:58:32] 2025-11-27 07:56:10,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:58:32] 2025-11-27 07:56:10,523 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:58:32] 2025-11-27 07:56:10,529 | INFO     | sum of square deviations: 1213746612930.025
[2025-11-27 02:58:32] 2025-11-27 07:56:10,619 | INFO     | sum of deviations: 3411536358506.0566
[2025-11-27 02:58:32] 2025-11-27 07:56:10,619 | INFO     | mean x: 1764182084.0907362
[2025-11-27 02:58:32] 2025-11-27 07:56:10,619 | INFO     | mean y: 3023319.8597715735
[2025-11-27 02:58:32] 2025-11-27 07:56:10,619 | INFO     | intersect: -4955648662.236643
[2025-11-27 02:58:32] 2025-11-27 07:56:10,621 | INFO     | chi2: 40.332607367825574
[2025-11-27 02:58:32] 2025-11-27 07:56:10,625 | INFO     | sum of square deviations: 1202232290380.349
[2025-11-27 02:58:32] 2025-11-27 07:56:10,744 | INFO     | sum of deviations: 4010434984857.7827
[2025-11-27 02:58:32] 2025-11-27 07:56:10,744 | INFO     | mean x: 1764181931.6021643
[2025-11-27 02:58:32] 2025-11-27 07:56:10,744 | INFO     | mean y: 3031249.8860598346
[2025-11-27 02:58:32] 2025-11-27 07:56:10,745 | INFO     | intersect: -5881968674.640127
[2025-11-27 02:58:32] 2025-11-27 07:56:10,746 | INFO     | chi2: 36.34901926993956
[2025-11-27 02:58:32] 2025-11-27 07:56:10,746 | INFO     | current chi2=36.34901926993956 (change=9.876842480220683 %)
[2025-11-27 02:58:32] 2025-11-27 07:56:10,746 | INFO     | right removable region: 1570
[2025-11-27 02:58:32] 2025-11-27 07:56:10,773 | INFO     | sum of square deviations: 1202228934532.5554
[2025-11-27 02:58:32] 2025-11-27 07:56:10,863 | INFO     | sum of deviations: 2719267612230.6846
[2025-11-27 02:58:32] 2025-11-27 07:56:10,864 | INFO     | mean x: 1764182236.6015277
[2025-11-27 02:58:32] 2025-11-27 07:56:10,864 | INFO     | mean y: 3032485.8796944623
[2025-11-27 02:58:32] 2025-11-27 07:56:10,864 | INFO     | intersect: -3987292052.37348
[2025-11-27 02:58:32] 2025-11-27 07:56:10,870 | INFO     | chi2: 35.926018876362726
[2025-11-27 02:58:32] 2025-11-27 07:56:10,870 | INFO     | current chi2=35.926018876362726 (change=10.925622663755938 %)
[2025-11-27 02:58:32] 2025-11-27 07:56:10,870 | INFO     | left removable region: 10
[2025-11-27 02:58:32] 2025-11-27 07:56:10,872 | INFO     | sum of square deviations: 1177151142360.625
[2025-11-27 02:58:32] 2025-11-27 07:56:10,962 | INFO     | sum of deviations: 2822244908222.249
[2025-11-27 02:58:32] 2025-11-27 07:56:10,963 | INFO     | mean x: 1764182206.125
[2025-11-27 02:58:32] 2025-11-27 07:56:10,963 | INFO     | mean y: 3050029.5371794873
[2025-11-27 02:58:32] 2025-11-27 07:56:10,963 | INFO     | intersect: -4226614343.406403
[2025-11-27 02:58:32] 2025-11-27 07:56:10,969 | INFO     | chi2: 27.977786827759942
[2025-11-27 02:58:32] 2025-11-27 07:56:10,969 | INFO     | current memory leak: 2.40 B/s (using 1560 data points, chi2=27.98)
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | could have reported an average CPU frequency of 2898 MHz (56 samples)
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | ..............................
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . Timing measurements:
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . get job = 0 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . initial setup = 7 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . payload setup = 50 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . stage-in = 0 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . payload execution = 96119 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . stage-out = 8 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,971 | INFO     | . log creation = 2 s
[2025-11-27 02:58:32] 2025-11-27 07:56:10,976 | INFO     | ..............................
[2025-11-27 02:58:32] 2025-11-27 07:56:11,330 | INFO     | 
[2025-11-27 02:58:32] 2025-11-27 07:56:11,330 | INFO     | job summary report
[2025-11-27 02:58:32] 2025-11-27 07:56:11,330 | INFO     | --------------------------------------------------
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | PanDA job id: 6895337449
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | task id: 47556137
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | errors: (none)
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | pilot state: finished 
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | transexitcode: 0
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | exeerrorcode: 0
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | exeerrordiag: 
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | exitcode: 0
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | exitmsg: OK
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | cpuconsumptiontime: 239167 s
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | nevents: 1000
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | neventsw: 0
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | pid: 3663079
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | pgrp: 3663079
[2025-11-27 02:58:32] 2025-11-27 07:56:11,331 | INFO     | corecount: 9
[2025-11-27 02:58:32] 2025-11-27 07:56:11,332 | INFO     | event service: False
[2025-11-27 02:58:32] 2025-11-27 07:56:11,332 | INFO     | sizes: {0: 2284264, 1: 2284292, 12: 2284292, 23: 2284320, 30: 2284610, 34: 2284638, 96174: 2353544, 96183: 2362538, 96186: 2362594, 96213: 2362840}
[2025-11-27 02:58:32] 2025-11-27 07:56:11,332 | INFO     | --------------------------------------------------
[2025-11-27 02:58:32] 2025-11-27 07:56:11,332 | INFO     | 
[2025-11-27 02:58:32] 2025-11-27 07:56:11,332 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 02:58:32] 2025-11-27 07:56:11,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:58:32] 2025-11-27 07:56:11,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:58:32] 2025-11-27 07:56:11,395 | INFO     | job 6895337449 has completed (purged errors)
[2025-11-27 02:58:32] 2025-11-27 07:56:11,395 | INFO     | overall cleanup function is called
[2025-11-27 02:58:32] 2025-11-27 07:56:12,487 | INFO     | --- collectZombieJob: --- 10, [3663079]
[2025-11-27 02:58:32] 2025-11-27 07:56:12,487 | INFO     | zombie collector waiting for pid 3663079
[2025-11-27 02:58:32] 2025-11-27 07:56:12,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:58:32] 2025-11-27 07:56:12,487 | INFO     | collected zombie processes
[2025-11-27 02:58:32] 2025-11-27 07:56:12,487 | INFO     | will attempt to kill all subprocesses of pid=3663079
[2025-11-27 02:58:32] 2025-11-27 07:56:13,413 | INFO     | process IDs to be killed: [3663079] (in reverse order)
[2025-11-27 02:58:32] 2025-11-27 07:56:13,564 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:58:32] 2025-11-27 07:56:13,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:58:32] 2025-11-27 07:56:13,581 | INFO     | did not find any defunct processes belonging to 3663079
[2025-11-27 02:58:32] 2025-11-27 07:56:13,602 | INFO     | did not find any defunct processes belonging to 3663079
[2025-11-27 02:58:32] 2025-11-27 07:56:13,611 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:58:32] 2025-11-27 07:56:13,612 | INFO     | ready for new job
[2025-11-27 02:58:32] 2025-11-27 07:56:13,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:58:32] 2025-11-27 07:56:13,645 | INFO     | ***************************************
[2025-11-27 02:58:32] 2025-11-27 07:56:13,646 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:58:32] 2025-11-27 07:56:13,646 | INFO     | ***************************************
[2025-11-27 02:58:32] 2025-11-27 07:56:13,646 | INFO     | 
[2025-11-27 02:58:32] 2025-11-27 07:56:13,661 | INFO     | architecture information:
[2025-11-27 02:58:32] 2025-11-27 07:56:13,678 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:58:32] 2025-11-27 07:56:13,738 | INFO     | cat /etc/os-release:
[2025-11-27 02:58:32] NAME="CentOS Linux"
[2025-11-27 02:58:32] VERSION="7 (Core)"
[2025-11-27 02:58:32] ID="centos"
[2025-11-27 02:58:32] ID_LIKE="rhel fedora"
[2025-11-27 02:58:32] VERSION_ID="7"
[2025-11-27 02:58:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:58:32] ANSI_COLOR="0;31"
[2025-11-27 02:58:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:58:32] HOME_URL="https://www.centos.org/"
[2025-11-27 02:58:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:58:32] 
[2025-11-27 02:58:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:58:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:58:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:58:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:58:32] 
[2025-11-27 02:58:32] 2025-11-27 07:56:13,738 | INFO     | ***************************************
[2025-11-27 02:58:32] 2025-11-27 07:56:14,244 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 02:58:32] 2025-11-27 07:56:14,306 | INFO     | sufficient remaining disk space (49898586112 B)
[2025-11-27 02:58:32] 2025-11-27 07:56:14,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:58:32] 2025-11-27 07:56:14,307 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:58:32] 2025-11-27 07:56:14,307 | INFO     | update_server=False
[2025-11-27 02:58:32] 2025-11-27 07:56:14,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:58:32] 2025-11-27 07:56:14,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:58:32] 2025-11-27 07:56:14,612 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 02:58:32] 2025-11-27 07:56:14,613 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 02:58:32] 2025-11-27 07:56:14,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:58:32] 2025-11-27 07:56:14,613 | INFO     | will abort loop
[2025-11-27 02:58:32] 2025-11-27 07:56:14,684 | INFO     | all data control threads have been joined
[2025-11-27 02:58:32] 2025-11-27 07:56:14,791 | INFO     | all job control threads have been joined
[2025-11-27 02:58:32] 2025-11-27 07:56:15,128 | INFO     | all payload control threads have been joined
[2025-11-27 02:58:32] 2025-11-27 07:56:15,313 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,468 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,619 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,624 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,690 | INFO     | [data] control thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,723 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,797 | INFO     | [job] control thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,849 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:15,854 | INFO     | [job] validate thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:16,135 | INFO     | [payload] control thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:16,314 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:16,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:58:32] 2025-11-27 07:56:16,434 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:16,738 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:16,883 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:17,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:58:32] 2025-11-27 07:56:17,356 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:21,328 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:58:32] 2025-11-27 07:56:25,894 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:58:32] 2025-11-27 07:56:26,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207159166784)>', '<ExcThread(monitor, started 140206447519488)>']
[2025-11-27 02:58:32] 2025-11-27 07:56:31,235 | INFO     | all workflow threads have been joined
[2025-11-27 02:58:32] 2025-11-27 07:56:31,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:58:32] 2025-11-27 07:56:31,235 | INFO     | traces error code: 0
[2025-11-27 02:58:32] 2025-11-27 07:56:31,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:58:32] 2025-11-27 07:56:32,141 [wrapper] supervise_pilot (15 min periods counter: 108)
[2025-11-27 02:58:32] 2025-11-27 07:56:43,196 | INFO     | PID=3647706 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:58:32] 2025-11-27 07:56:43,197 | INFO     | .. there are 18 such processes running
[2025-11-27 02:58:32] 2025-11-27 07:56:43,202 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:58:32] 2025-11-27 07:56:43,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:58:32] 2025-11-27 07:56:43,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:58:32] 2025-11-27 07:56:43,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:58:32] 2025-11-27 07:56:43,202 | INFO     | [monitor] control thread has ended
[2025-11-27 02:58:32] 2025-11-27 07:56:43,549 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:58:32] 2025-11-27 07:56:43,569 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:58:32] 2025-11-27 07:56:43,592 [wrapper] pilotpid: 3647706
[2025-11-27 02:58:32] 2025-11-27 07:56:43,610 [wrapper] Pilot exit status: 0
[2025-11-27 02:58:32] 2025-11-27 07:56:43,651 [wrapper] pandaids: 6895337449
[2025-11-27 02:58:32] 2025-11-27 07:56:44,101 [wrapper] cleanup supervisor_pilot 3599542 3647707
[2025-11-27 02:58:32] 2025-11-27 07:56:44,123 [wrapper] Test setup, not cleaning
[2025-11-27 02:58:32] 2025-11-27 07:56:44,140 [wrapper] apfmon messages muted
[2025-11-27 02:58:32] 2025-11-27 07:56:44,147 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:58:32] 2025-11-27 07:56:44,169 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:58:32]  *** Error codes and diagnostics ***
[2025-11-27 02:58:32]     "exeErrorCode": 0,
[2025-11-27 02:58:32]     "exeErrorDiag": "",
[2025-11-27 02:58:32]     "pilotErrorCode": 0,
[2025-11-27 02:58:32]     "pilotErrorDiag": "",
[2025-11-27 02:58:32]  *** Listing of results directory ***
[2025-11-27 02:58:32] total 1327224
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 02:52 queuedata.json
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 02:52 pilot3.tar.gz
[2025-11-27 02:58:32] -rwx------. 1 boincer umatlas     36292 Nov 22 02:53 runpilot2-wrapper.sh
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:58:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-27 02:58:32] -rw-r--r--. 2 boincer umatlas 407206205 Nov 26 00:10 EVNT.47483658._000305.pool.root.1
[2025-11-27 02:58:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 02:58:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-27 02:58:32] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:10 input.tar.gz
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:10 pandaJob.out
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas        57 Nov 26 00:10 setup.sh.local
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-27 02:58:32] drwx------. 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:48 boinc_task_state.xml
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas 919128985 Nov 27 02:54 HITS.47556137._003014.pool.root.1
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 02:54 init_data.xml
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas      1058 Nov 27 02:55 memory_monitor_summary.json
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas   2650592 Nov 27 02:55 log.47556137._003014.job.log.tgz.1
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas      8618 Nov 27 02:56 heartbeat.json
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas        95 Nov 27 02:56 pilot_heartbeat.json
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas       823 Nov 27 02:56 pilotlog.txt
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas  11761961 Nov 27 02:56 log.47556137._003014.job.log.1
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas       353 Nov 27 02:56 output.list
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:56 runtime_log
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas  14428160 Nov 27 02:56 result.tar.gz
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas       661 Nov 27 02:56 V0iNDmScxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme2JKDm6xyJWn.diag
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 02:56 runtime_log.err
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:58 boinc_mmap_file
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:58 wrapper_checkpoint.txt
[2025-11-27 02:58:32] -rw-r--r--. 1 boincer umatlas     21772 Nov 27 02:58 stderr.txt
[2025-11-27 02:58:32] HITS file was successfully produced:
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas 919128985 Nov 27 02:54 shared/HITS.pool.root.1
[2025-11-27 02:58:32]  *** Contents of shared directory: ***
[2025-11-27 02:58:32] total 1309948
[2025-11-27 02:58:32] -rw-r--r--. 2 boincer umatlas 407206205 Nov 26 00:10 ATLAS.root_0
[2025-11-27 02:58:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 02:58:32] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:10 input.tar.gz
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas 919128985 Nov 27 02:54 HITS.pool.root.1
[2025-11-27 02:58:32] -rw-------. 1 boincer umatlas  14428160 Nov 27 02:56 result.tar.gz
02:58:34 (3638794): run_atlas exited; CPU time 241083.782702
02:58:34 (3638794): called boinc_finish(0)

</stderr_txt>
]]>

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