Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:49 (4145647): wrapper (7.7.26015): starting
00:11:49 (4145647): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:11:49] Arguments: --nthreads 8
[2025-11-26 00:11:49] Threads: 8
[2025-11-26 00:11:49] Checking for CVMFS
[2025-11-26 00:11:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:11:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:11:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:11:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:11:50] 2.13.2.0 8445 34902 207440 153309 0 391 38186325 40960001 19909 16776704 0 74926617 99.784 38579262 35920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:11:50] CVMFS is ok
[2025-11-26 00:11:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:11:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:11:50] Further information can be found at the LHC@home message board.
[2025-11-26 00:11:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:11:50] Checking for apptainer binary...
[2025-11-26 00:11:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:11:50] Running /usr/bin/apptainer --version
[2025-11-26 00:11:50] apptainer version 1.4.4-1.el9
[2025-11-26 00:11:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:11:51] c-212-2.aglt2.org
[2025-11-26 00:11:51] apptainer works
[2025-11-26 00:11:51] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:11:51] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:11:51] Starting ATLAS job with PandaID=6894265139
[2025-11-26 00:11:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:23:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:23:40] 2025-11-27 10:22:52,989 | INFO     | monitor loop #5667: job 0:6894265139 is in state 'finished'
[2025-11-27 05:23:40] 2025-11-27 10:22:52,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:23:40] 2025-11-27 10:22:52,996 | INFO     | time since job start (105035s) is within the limit (172800.0s)
[2025-11-27 05:23:40] 2025-11-27 10:22:53,773 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:23:40] 2025-11-27 10:22:53,778 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3018.6095312500015
[2025-11-27 05:23:40] 2025-11-27 10:22:53,799 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6894265139/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:23:40] 2025-11-27 10:22:53,800 | INFO     | extracted standard info from prmon json
[2025-11-27 05:23:40] 2025-11-27 10:22:53,800 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:23:40] 2025-11-27 10:22:53,800 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:23:40] 2025-11-27 10:22:53,822 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:23:40] 2025-11-27 10:22:53,824 | INFO     | sum of square deviations: 1580435116231.2517
[2025-11-27 05:23:40] 2025-11-27 10:22:53,886 | INFO     | sum of deviations: 9626321054709.543
[2025-11-27 05:23:40] 2025-11-27 10:22:53,887 | INFO     | mean x: 1764186461.859965
[2025-11-27 05:23:40] 2025-11-27 10:22:53,887 | INFO     | mean y: 2845406.857059849
[2025-11-27 05:23:40] 2025-11-27 10:22:53,887 | INFO     | intersect: -10742692393.34909
[2025-11-27 05:23:40] 2025-11-27 10:22:53,889 | INFO     | chi2: 10.22385931098906
[2025-11-27 05:23:40] 2025-11-27 10:22:53,890 | INFO     | sum of square deviations: 1566700341245.2344
[2025-11-27 05:23:40] 2025-11-27 10:22:53,954 | INFO     | sum of deviations: 10195684557921.207
[2025-11-27 05:23:40] 2025-11-27 10:22:53,954 | INFO     | mean x: 1764186309.3682983
[2025-11-27 05:23:40] 2025-11-27 10:22:53,955 | INFO     | mean y: 2851729.007575758
[2025-11-27 05:23:40] 2025-11-27 10:22:53,955 | INFO     | intersect: -11478020929.401361
[2025-11-27 05:23:40] 2025-11-27 10:22:53,956 | INFO     | chi2: 7.077405961987569
[2025-11-27 05:23:40] 2025-11-27 10:22:53,956 | INFO     | current chi2=7.077405961987569 (change=30.775593181525316 %)
[2025-11-27 05:23:40] 2025-11-27 10:22:53,958 | INFO     | sum of square deviations: 1553045172244.4841
[2025-11-27 05:23:40] 2025-11-27 10:22:54,072 | INFO     | sum of deviations: 10532866568505.734
[2025-11-27 05:23:40] 2025-11-27 10:22:54,073 | INFO     | mean x: 1764186156.8755114
[2025-11-27 05:23:40] 2025-11-27 10:22:54,073 | INFO     | mean y: 2855491.721800117
[2025-11-27 05:23:40] 2025-11-27 10:22:54,073 | INFO     | intersect: -11961984761.778229
[2025-11-27 05:23:40] 2025-11-27 10:22:54,084 | INFO     | chi2: 5.556000304536013
[2025-11-27 05:23:40] 2025-11-27 10:22:54,084 | INFO     | current chi2=5.556000304536013 (change=21.49665662282138 %)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,084 | INFO     | right removable region: 1710
[2025-11-27 05:23:40] 2025-11-27 10:22:54,086 | INFO     | sum of square deviations: 1566697338825.2358
[2025-11-27 05:23:40] 2025-11-27 10:22:54,157 | INFO     | sum of deviations: 8975934498222.31
[2025-11-27 05:23:40] 2025-11-27 10:22:54,158 | INFO     | mean x: 1764186614.3682983
[2025-11-27 05:23:40] 2025-11-27 10:22:54,158 | INFO     | mean y: 2852626.7004662002
[2025-11-27 05:23:40] 2025-11-27 10:22:54,158 | INFO     | intersect: -10104538954.80578
[2025-11-27 05:23:40] 2025-11-27 10:22:54,159 | INFO     | chi2: 6.522783215452153
[2025-11-27 05:23:40] 2025-11-27 10:22:54,160 | INFO     | current chi2=6.522783215452153 (change=36.20038170477195 %)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,161 | INFO     | sum of square deviations: 1553039481305.7332
[2025-11-27 05:23:40] 2025-11-27 10:22:54,239 | INFO     | sum of deviations: 8569011442708.825
[2025-11-27 05:23:40] 2025-11-27 10:22:54,239 | INFO     | mean x: 1764186766.8760958
[2025-11-27 05:23:40] 2025-11-27 10:22:54,240 | INFO     | mean y: 2857168.102863822
[2025-11-27 05:23:40] 2025-11-27 10:22:54,240 | INFO     | intersect: -9731175208.026237
[2025-11-27 05:23:40] 2025-11-27 10:22:54,241 | INFO     | chi2: 5.106720134567862
[2025-11-27 05:23:40] 2025-11-27 10:22:54,241 | INFO     | current chi2=5.106720134567862 (change=21.709491701789304 %)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,242 | INFO     | left removable region: 20
[2025-11-27 05:23:40] 2025-11-27 10:22:54,243 | INFO     | sum of square deviations: 1496556236596.5444
[2025-11-27 05:23:40] 2025-11-27 10:22:54,326 | INFO     | sum of deviations: 9224918301559.717
[2025-11-27 05:23:40] 2025-11-27 10:22:54,326 | INFO     | mean x: 1764186736.366864
[2025-11-27 05:23:40] 2025-11-27 10:22:54,326 | INFO     | mean y: 2870856.552071006
[2025-11-27 05:23:40] 2025-11-27 10:22:54,326 | INFO     | intersect: -10871747893.954006
[2025-11-27 05:23:40] 2025-11-27 10:22:54,328 | INFO     | chi2: 0.24535599548947626
[2025-11-27 05:23:40] 2025-11-27 10:22:54,328 | INFO     | current memory leak: 6.16 B/s (using 1690 data points, chi2=0.25)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,329 | INFO     | could have reported an average CPU frequency of 3051 MHz (61 samples)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,329 | INFO     | ..............................
[2025-11-27 05:23:40] 2025-11-27 10:22:54,329 | INFO     | . Timing measurements:
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . get job = 0 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . initial setup = 3 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . payload setup = 14 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . stage-in = 0 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . payload execution = 104967 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . stage-out = 4 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | . log creation = 1 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,330 | INFO     | ..............................
[2025-11-27 05:23:40] 2025-11-27 10:22:54,438 | INFO     | 
[2025-11-27 05:23:40] 2025-11-27 10:22:54,440 | INFO     | job summary report
[2025-11-27 05:23:40] 2025-11-27 10:22:54,440 | INFO     | --------------------------------------------------
[2025-11-27 05:23:40] 2025-11-27 10:22:54,440 | INFO     | PanDA job id: 6894265139
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | task id: 47533967
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | errors: (none)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | pilot state: finished 
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | transexitcode: 0
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | exeerrorcode: 0
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | exeerrordiag: 
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | exitcode: 0
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | exitmsg: OK
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | cpuconsumptiontime: 221615 s
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | nevents: 1000
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | neventsw: 0
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | pid: 4169844
[2025-11-27 05:23:40] 2025-11-27 10:22:54,441 | INFO     | pgrp: 4169844
[2025-11-27 05:23:40] 2025-11-27 10:22:54,442 | INFO     | corecount: 8
[2025-11-27 05:23:40] 2025-11-27 10:22:54,442 | INFO     | event service: False
[2025-11-27 05:23:40] 2025-11-27 10:22:54,442 | INFO     | sizes: {0: 2283486, 1: 2284342, 2: 2284342, 12: 2284370, 14: 2284660, 23: 2284688, 104985: 2357839, 104989: 2366833, 104990: 2366889, 105001: 2367135}
[2025-11-27 05:23:40] 2025-11-27 10:22:54,442 | INFO     | --------------------------------------------------
[2025-11-27 05:23:40] 2025-11-27 10:22:54,442 | INFO     | 
[2025-11-27 05:23:40] 2025-11-27 10:22:54,442 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 05:23:40] 2025-11-27 10:22:54,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | job 6894265139 has completed (purged errors)
[2025-11-27 05:23:40] 2025-11-27 10:22:54,469 | INFO     | overall cleanup function is called
[2025-11-27 05:23:40] 2025-11-27 10:22:55,488 | INFO     | --- collectZombieJob: --- 10, [4169844]
[2025-11-27 05:23:40] 2025-11-27 10:22:55,488 | INFO     | zombie collector waiting for pid 4169844
[2025-11-27 05:23:40] 2025-11-27 10:22:55,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:23:40] 2025-11-27 10:22:55,488 | INFO     | collected zombie processes
[2025-11-27 05:23:40] 2025-11-27 10:22:55,488 | INFO     | will attempt to kill all subprocesses of pid=4169844
[2025-11-27 05:23:40] 2025-11-27 10:22:56,237 | INFO     | process IDs to be killed: [4169844] (in reverse order)
[2025-11-27 05:23:40] 2025-11-27 10:22:56,594 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:23:40] 2025-11-27 10:22:56,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:23:40] 2025-11-27 10:22:56,758 | INFO     | did not find any defunct processes belonging to 4169844
[2025-11-27 05:23:40] 2025-11-27 10:22:56,792 | INFO     | did not find any defunct processes belonging to 4169844
[2025-11-27 05:23:40] 2025-11-27 10:22:56,796 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:23:40] 2025-11-27 10:22:56,797 | INFO     | ready for new job
[2025-11-27 05:23:40] 2025-11-27 10:22:56,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:23:40] 2025-11-27 10:22:56,807 | INFO     | ***************************************
[2025-11-27 05:23:40] 2025-11-27 10:22:56,807 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:23:40] 2025-11-27 10:22:56,807 | INFO     | ***************************************
[2025-11-27 05:23:40] 2025-11-27 10:22:56,807 | INFO     | 
[2025-11-27 05:23:40] 2025-11-27 10:22:56,820 | INFO     | architecture information:
[2025-11-27 05:23:40] 2025-11-27 10:22:56,821 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:23:40] 2025-11-27 10:22:56,859 | INFO     | cat /etc/os-release:
[2025-11-27 05:23:40] NAME="CentOS Linux"
[2025-11-27 05:23:40] VERSION="7 (Core)"
[2025-11-27 05:23:40] ID="centos"
[2025-11-27 05:23:40] ID_LIKE="rhel fedora"
[2025-11-27 05:23:40] VERSION_ID="7"
[2025-11-27 05:23:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:23:40] ANSI_COLOR="0;31"
[2025-11-27 05:23:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:23:40] HOME_URL="https://www.centos.org/"
[2025-11-27 05:23:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:23:40] 
[2025-11-27 05:23:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:23:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:23:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:23:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:23:40] 
[2025-11-27 05:23:40] 2025-11-27 10:22:56,859 | INFO     | ***************************************
[2025-11-27 05:23:40] 2025-11-27 10:22:57,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 05:23:40] 2025-11-27 10:22:57,442 | INFO     | sufficient remaining disk space (119315365888 B)
[2025-11-27 05:23:40] 2025-11-27 10:22:57,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:23:40] 2025-11-27 10:22:57,442 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:23:40] 2025-11-27 10:22:57,442 | INFO     | update_server=False
[2025-11-27 05:23:40] 2025-11-27 10:22:57,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:23:40] 2025-11-27 10:22:57,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:23:40] 2025-11-27 10:22:57,443 | INFO     | aborting loop
[2025-11-27 05:23:40] 2025-11-27 10:22:57,662 | INFO     | all job control threads have been joined
[2025-11-27 05:23:40] 2025-11-27 10:22:57,895 | INFO     | all data control threads have been joined
[2025-11-27 05:23:40] 2025-11-27 10:22:57,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:23:40] 2025-11-27 10:22:58,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:23:40] 2025-11-27 10:22:58,447 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,448 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,506 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,616 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,668 | INFO     | [job] control thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,839 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:58,892 | INFO     | all payload control threads have been joined
[2025-11-27 05:23:40] 2025-11-27 10:22:58,900 | INFO     | [data] control thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:59,258 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:59,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:23:40] 2025-11-27 10:22:59,497 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:59,587 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:59,900 | INFO     | [payload] control thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:22:59,916 | INFO     | [job] validate thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:23:00,086 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:23:00,463 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:23:01,956 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:23:40] 2025-11-27 10:23:26,635 | INFO     | PID=4150404 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:23:40] 2025-11-27 10:23:26,635 | INFO     | .. there are 19 such processes running
[2025-11-27 05:23:40] 2025-11-27 10:23:26,636 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:23:40] 2025-11-27 10:23:26,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:23:40] 2025-11-27 10:23:26,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:23:40] 2025-11-27 10:23:32,625 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:23:40] 2025-11-27 10:23:34,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724615309120)>', '<ExcThread(monitor, started 139724119328512)>']
[2025-11-27 05:23:40] 2025-11-27 10:23:34,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:23:40] 2025-11-27 10:23:34,679 | INFO     | [monitor] control thread has ended
[2025-11-27 05:23:40] 2025-11-27 10:23:39,099 | INFO     | all workflow threads have been joined
[2025-11-27 05:23:40] 2025-11-27 10:23:39,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:23:40] 2025-11-27 10:23:39,099 | INFO     | traces error code: 0
[2025-11-27 05:23:40] 2025-11-27 10:23:39,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:23:40] 2025-11-27 10:23:39,622 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:23:40] 2025-11-27 10:23:39,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:23:40] 2025-11-27 10:23:39,642 [wrapper] pilotpid: 4150404
[2025-11-27 05:23:40] 2025-11-27 10:23:39,656 [wrapper] Pilot exit status: 0
[2025-11-27 05:23:40] 2025-11-27 10:23:39,697 [wrapper] pandaids: 6894265139
[2025-11-27 05:23:40] 2025-11-27 10:23:39,798 [wrapper] cleanup supervisor_pilot 4041549 4150405
[2025-11-27 05:23:40] 2025-11-27 10:23:39,801 [wrapper] Test setup, not cleaning
[2025-11-27 05:23:40] 2025-11-27 10:23:39,804 [wrapper] apfmon messages muted
[2025-11-27 05:23:40] 2025-11-27 10:23:39,806 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:23:40] 2025-11-27 10:23:39,813 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:23:40]  *** Error codes and diagnostics ***
[2025-11-27 05:23:40]     "exeErrorCode": 0,
[2025-11-27 05:23:40]     "exeErrorDiag": "",
[2025-11-27 05:23:40]     "pilotErrorCode": 0,
[2025-11-27 05:23:40]     "pilotErrorDiag": "",
[2025-11-27 05:23:40]  *** Listing of results directory ***
[2025-11-27 05:23:40] total 1335176
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 23:12 pilot3.tar.gz
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 23:52 queuedata.json
[2025-11-27 05:23:40] -rwx------. 1 boincer umatlas     36292 Nov 20 23:53 runpilot2-wrapper.sh
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:23:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:11 run_atlas
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:11 job.xml
[2025-11-27 05:23:40] -rw-r--r--. 2 boincer umatlas 410841735 Nov 26 00:11 EVNT.47493127._002206.pool.root.1
[2025-11-27 05:23:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:11 start_atlas.sh
[2025-11-27 05:23:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:11 shared
[2025-11-27 05:23:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:11 input.tar.gz
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:11 boinc_lockfile
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:11 pandaJob.out
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas        57 Nov 26 00:11 setup.sh.local
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas    991877 Nov 26 00:12 agis_schedconf.cvmfs.json
[2025-11-27 05:23:40] drwx------. 5 boincer umatlas      4096 Nov 26 00:12 pilot3
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas       533 Nov 27 05:10 boinc_task_state.xml
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas 922323336 Nov 27 05:22 HITS.47533967._001779.pool.root.1
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 05:22 init_data.xml
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas      1077 Nov 27 05:22 memory_monitor_summary.json
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:22 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas   2608372 Nov 27 05:22 log.47533967._001779.job.log.tgz.1
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas      8627 Nov 27 05:22 heartbeat.json
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas        95 Nov 27 05:23 pilot_heartbeat.json
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:23 boinc_mmap_file
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:23 wrapper_checkpoint.txt
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas      4825 Nov 27 05:23 pilotlog.txt
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas  12459426 Nov 27 05:23 log.47533967._001779.job.log.1
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas       353 Nov 27 05:23 output.list
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:23 runtime_log
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas  15083520 Nov 27 05:23 result.tar.gz
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 05:23 runtime_log.err
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas       667 Nov 27 05:23 FtLNDmcKYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmP3IKDm6bYYyn.diag
[2025-11-27 05:23:40] -rw-r--r--. 1 boincer umatlas     21372 Nov 27 05:23 stderr.txt
[2025-11-27 05:23:40] HITS file was successfully produced:
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas 922323336 Nov 27 05:22 shared/HITS.pool.root.1
[2025-11-27 05:23:40]  *** Contents of shared directory: ***
[2025-11-27 05:23:40] total 1317260
[2025-11-27 05:23:40] -rw-r--r--. 2 boincer umatlas 410841735 Nov 26 00:11 ATLAS.root_0
[2025-11-27 05:23:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:11 start_atlas.sh
[2025-11-27 05:23:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:11 input.tar.gz
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas 922323336 Nov 27 05:22 HITS.pool.root.1
[2025-11-27 05:23:40] -rw-------. 1 boincer umatlas  15083520 Nov 27 05:23 result.tar.gz
05:24:02 (4145647): run_atlas exited; CPU time 222243.248580
05:24:02 (4145647): called boinc_finish(0)

</stderr_txt>
]]>

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