Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:07 (4148669): wrapper (7.7.26015): starting
00:12:07 (4148669): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:07] Arguments: --nthreads 8
[2025-11-26 00:12:07] Threads: 8
[2025-11-26 00:12:07] Checking for CVMFS
[2025-11-26 00:12:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:08] 2.13.2.0 8445 34903 207440 153309 0 391 38186325 40960001 19963 16776704 0 74934793 99.784 38579262 35920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:12:08] CVMFS is ok
[2025-11-26 00:12:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:08] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:08] Checking for apptainer binary...
[2025-11-26 00:12:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:08] Running /usr/bin/apptainer --version
[2025-11-26 00:12:08] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:09] c-212-2.aglt2.org
[2025-11-26 00:12:09] apptainer works
[2025-11-26 00:12:09] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:09] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:09] Starting ATLAS job with PandaID=6895475293
[2025-11-26 00:12:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:56:33]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:56:33] 2025-11-27 07:55:44,919 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 02:56:33] 2025-11-27 07:55:45,309 | INFO     | time since job start (96188s) is within the limit (172800.0s)
[2025-11-27 02:56:33] 2025-11-27 07:55:46,314 | INFO     | monitor loop #5720: job 0:6895475293 is in state 'finished'
[2025-11-27 02:56:33] 2025-11-27 07:55:46,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:56:33] 2025-11-27 07:55:47,316 | INFO     | time since job start (96190s) is within the limit (172800.0s)
[2025-11-27 02:56:33] 2025-11-27 07:55:48,829 | INFO     | monitor loop #5721: job 0:6895475293 is in state 'finished'
[2025-11-27 02:56:33] 2025-11-27 07:55:48,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:56:33] 2025-11-27 07:55:49,322 | INFO     | time since job start (96192s) is within the limit (172800.0s)
[2025-11-27 02:56:33] 2025-11-27 07:55:50,989 | INFO     | PID=4157576 has CPU usage=18.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 02:56:33] 2025-11-27 07:55:50,989 | INFO     | .. there are 19 such processes running
[2025-11-27 02:56:33] 2025-11-27 07:55:51,332 | INFO     | monitor loop #5722: job 0:6895475293 is in state 'finished'
[2025-11-27 02:56:33] 2025-11-27 07:55:51,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:56:33] 2025-11-27 07:55:51,990 | INFO     | time since job start (96194s) is within the limit (172800.0s)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,529 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:56:33] 2025-11-27 07:55:53,536 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2944.0296562499993
[2025-11-27 02:56:33] 2025-11-27 07:55:53,553 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895475293/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,554 | INFO     | extracted standard info from prmon json
[2025-11-27 02:56:33] 2025-11-27 07:55:53,554 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:56:33] 2025-11-27 07:55:53,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:56:33] 2025-11-27 07:55:53,577 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:56:33] 2025-11-27 07:55:53,579 | INFO     | sum of square deviations: 1213689418955.3538
[2025-11-27 02:56:33] 2025-11-27 07:55:53,630 | INFO     | sum of deviations: 4554099131788.449
[2025-11-27 02:56:33] 2025-11-27 07:55:53,631 | INFO     | mean x: 1764182053.9796953
[2025-11-27 02:56:33] 2025-11-27 07:55:53,631 | INFO     | mean y: 2829824.888959391
[2025-11-27 02:56:33] 2025-11-27 07:55:53,631 | INFO     | intersect: -6616870268.781576
[2025-11-27 02:56:33] 2025-11-27 07:55:53,632 | INFO     | chi2: 21.37635824619775
[2025-11-27 02:56:33] 2025-11-27 07:55:53,634 | INFO     | sum of square deviations: 1202175043034.6172
[2025-11-27 02:56:33] 2025-11-27 07:55:53,685 | INFO     | sum of deviations: 5050495289269.455
[2025-11-27 02:56:33] 2025-11-27 07:55:53,685 | INFO     | mean x: 1764181901.49077
[2025-11-27 02:56:33] 2025-11-27 07:55:53,685 | INFO     | mean y: 2836399.169318905
[2025-11-27 02:56:33] 2025-11-27 07:55:53,685 | INFO     | intersect: -7408723535.066478
[2025-11-27 02:56:33] 2025-11-27 07:55:53,687 | INFO     | chi2: 18.322260247085005
[2025-11-27 02:56:33] 2025-11-27 07:55:53,687 | INFO     | current chi2=18.322260247085005 (change=14.287269907894546 %)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,687 | INFO     | right removable region: 1570
[2025-11-27 02:56:33] 2025-11-27 07:55:53,688 | INFO     | sum of square deviations: 1202171697794.6177
[2025-11-27 02:56:33] 2025-11-27 07:55:53,748 | INFO     | sum of deviations: 3958107279033.509
[2025-11-27 02:56:33] 2025-11-27 07:55:53,748 | INFO     | mean x: 1764182206.49077
[2025-11-27 02:56:33] 2025-11-27 07:55:53,748 | INFO     | mean y: 2837716.1731381286
[2025-11-27 02:56:33] 2025-11-27 07:55:53,748 | INFO     | intersect: -5805669043.603766
[2025-11-27 02:56:33] 2025-11-27 07:55:53,750 | INFO     | chi2: 17.673848950620428
[2025-11-27 02:56:33] 2025-11-27 07:55:53,750 | INFO     | current chi2=17.673848950620428 (change=17.32058030153894 %)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,750 | INFO     | left removable region: 10
[2025-11-27 02:56:33] 2025-11-27 07:55:53,751 | INFO     | sum of square deviations: 1177093608483.6355
[2025-11-27 02:56:33] 2025-11-27 07:55:53,840 | INFO     | monitor loop #5723: job 0:6895475293 is in state 'finished'
[2025-11-27 02:56:33] 2025-11-27 07:55:53,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,863 | INFO     | sum of deviations: 4222507578875.5645
[2025-11-27 02:56:33] 2025-11-27 07:55:53,863 | INFO     | mean x: 1764182176.0153847
[2025-11-27 02:56:33] 2025-11-27 07:55:53,864 | INFO     | mean y: 2850718.6006410257
[2025-11-27 02:56:33] 2025-11-27 07:55:53,864 | INFO     | intersect: -6325679616.670235
[2025-11-27 02:56:33] 2025-11-27 07:55:53,865 | INFO     | chi2: 12.431350140803538
[2025-11-27 02:56:33] 2025-11-27 07:55:53,865 | INFO     | current memory leak: 3.59 B/s (using 1560 data points, chi2=12.43)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | could have reported an average CPU frequency of 3052 MHz (56 samples)
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | ..............................
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . Timing measurements:
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . get job = 0 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . initial setup = 2 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . payload setup = 15 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . stage-in = 0 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . payload execution = 96128 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . stage-out = 4 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,867 | INFO     | . log creation = 1 s
[2025-11-27 02:56:33] 2025-11-27 07:55:53,868 | INFO     | ..............................
[2025-11-27 02:56:33] 2025-11-27 07:55:53,996 | INFO     | time since job start (96196s) is within the limit (172800.0s)
[2025-11-27 02:56:33] 2025-11-27 07:55:54,138 | INFO     | 
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | job summary report
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | --------------------------------------------------
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | PanDA job id: 6895475293
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | task id: 47556149
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | errors: (none)
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:56:33] 2025-11-27 07:55:54,139 | INFO     | pilot state: finished 
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | transexitcode: 0
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | exeerrorcode: 0
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | exeerrordiag: 
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | exitcode: 0
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | exitmsg: OK
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | cpuconsumptiontime: 218584 s
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | nevents: 1000
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | neventsw: 0
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | pid: 4182333
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | pgrp: 4182333
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | corecount: 8
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | event service: False
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | sizes: {0: 2284087, 1: 2284342, 12: 2284342, 14: 2284632, 23: 2284660, 96147: 2354367, 96152: 2363361, 96156: 2363417, 96165: 2363663}
[2025-11-27 02:56:33] 2025-11-27 07:55:54,140 | INFO     | --------------------------------------------------
[2025-11-27 02:56:33] 2025-11-27 07:55:54,141 | INFO     | 
[2025-11-27 02:56:33] 2025-11-27 07:55:54,141 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 02:56:33] 2025-11-27 07:55:54,253 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,254 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | job 6895475293 has completed (purged errors)
[2025-11-27 02:56:33] 2025-11-27 07:55:54,255 | INFO     | overall cleanup function is called
[2025-11-27 02:56:33] 2025-11-27 07:55:55,272 | INFO     | --- collectZombieJob: --- 10, [4182333]
[2025-11-27 02:56:33] 2025-11-27 07:55:55,273 | INFO     | zombie collector waiting for pid 4182333
[2025-11-27 02:56:33] 2025-11-27 07:55:55,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:56:33] 2025-11-27 07:55:55,273 | INFO     | collected zombie processes
[2025-11-27 02:56:33] 2025-11-27 07:55:55,273 | INFO     | will attempt to kill all subprocesses of pid=4182333
[2025-11-27 02:56:33] 2025-11-27 07:55:55,789 | INFO     | process IDs to be killed: [4182333] (in reverse order)
[2025-11-27 02:56:33] 2025-11-27 07:55:55,926 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:56:33] 2025-11-27 07:55:55,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:56:33] 2025-11-27 07:55:56,011 | INFO     | did not find any defunct processes belonging to 4182333
[2025-11-27 02:56:33] 2025-11-27 07:55:56,029 | INFO     | did not find any defunct processes belonging to 4182333
[2025-11-27 02:56:33] 2025-11-27 07:55:56,030 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:56:33] 2025-11-27 07:55:56,030 | INFO     | ready for new job
[2025-11-27 02:56:33] 2025-11-27 07:55:56,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:56:33] 2025-11-27 07:55:56,049 | INFO     | ***************************************
[2025-11-27 02:56:33] 2025-11-27 07:55:56,050 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:56:33] 2025-11-27 07:55:56,050 | INFO     | ***************************************
[2025-11-27 02:56:33] 2025-11-27 07:55:56,050 | INFO     | 
[2025-11-27 02:56:33] 2025-11-27 07:55:56,055 | INFO     | architecture information:
[2025-11-27 02:56:33] 2025-11-27 07:55:56,056 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:56:33] 2025-11-27 07:55:56,073 | INFO     | cat /etc/os-release:
[2025-11-27 02:56:33] NAME="CentOS Linux"
[2025-11-27 02:56:33] VERSION="7 (Core)"
[2025-11-27 02:56:33] ID="centos"
[2025-11-27 02:56:33] ID_LIKE="rhel fedora"
[2025-11-27 02:56:33] VERSION_ID="7"
[2025-11-27 02:56:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:56:33] ANSI_COLOR="0;31"
[2025-11-27 02:56:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:56:33] HOME_URL="https://www.centos.org/"
[2025-11-27 02:56:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:56:33] 
[2025-11-27 02:56:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:56:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:56:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:56:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:56:33] 
[2025-11-27 02:56:33] 2025-11-27 07:55:56,073 | INFO     | ***************************************
[2025-11-27 02:56:33] 2025-11-27 07:55:56,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 02:56:33] 2025-11-27 07:55:56,643 | INFO     | sufficient remaining disk space (119861673984 B)
[2025-11-27 02:56:33] 2025-11-27 07:55:56,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:56:33] 2025-11-27 07:55:56,644 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:56:33] 2025-11-27 07:55:56,644 | INFO     | update_server=False
[2025-11-27 02:56:33] 2025-11-27 07:55:56,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:56:33] 2025-11-27 07:55:56,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:56:33] 2025-11-27 07:55:57,180 | INFO     | all data control threads have been joined
[2025-11-27 02:56:33] 2025-11-27 07:55:57,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:56:33] 2025-11-27 07:55:57,351 | INFO     | aborting loop
[2025-11-27 02:56:33] 2025-11-27 07:55:57,551 | INFO     | all payload control threads have been joined
[2025-11-27 02:56:33] 2025-11-27 07:55:57,650 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:57,710 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:57,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:57,891 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:57,928 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:58,057 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:58,092 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:58,185 | INFO     | [data] control thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:58,227 | INFO     | all job control threads have been joined
[2025-11-27 02:56:33] 2025-11-27 07:55:58,368 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:58,557 | INFO     | [payload] control thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:58,762 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:59,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:56:33] 2025-11-27 07:55:59,172 | INFO     | [job] validate thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:59,233 | INFO     | [job] control thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:55:59,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:56:33] 2025-11-27 07:56:00,030 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:56:03,768 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:56:07,171 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:56:33] 2025-11-27 07:56:08,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:56:33] 2025-11-27 07:56:26,526 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:56:33] 2025-11-27 07:56:27,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895519614784)>', '<ExcThread(monitor, started 139894802347776)>']
[2025-11-27 02:56:33] 2025-11-27 07:56:27,930 | INFO     | PID=4157576 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:56:33] 2025-11-27 07:56:27,931 | INFO     | .. there are 19 such processes running
[2025-11-27 02:56:33] 2025-11-27 07:56:27,931 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:56:33] 2025-11-27 07:56:27,931 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:56:33] 2025-11-27 07:56:27,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:56:33] 2025-11-27 07:56:27,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:56:33] 2025-11-27 07:56:27,932 | INFO     | [monitor] control thread has ended
[2025-11-27 02:56:33] 2025-11-27 07:56:32,638 | INFO     | all workflow threads have been joined
[2025-11-27 02:56:33] 2025-11-27 07:56:32,642 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:56:33] 2025-11-27 07:56:32,642 | INFO     | traces error code: 0
[2025-11-27 02:56:33] 2025-11-27 07:56:32,642 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:56:33] 2025-11-27 07:56:32,917 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:56:33] 2025-11-27 07:56:32,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:56:33] 2025-11-27 07:56:32,960 [wrapper] pilotpid: 4157576
[2025-11-27 02:56:33] 2025-11-27 07:56:32,975 [wrapper] Pilot exit status: 0
[2025-11-27 02:56:33] 2025-11-27 07:56:32,994 [wrapper] pandaids: 6895475293
[2025-11-27 02:56:33] 2025-11-27 07:56:33,091 [wrapper] cleanup supervisor_pilot 3693469 4157577
[2025-11-27 02:56:33] 2025-11-27 07:56:33,094 [wrapper] Test setup, not cleaning
[2025-11-27 02:56:33] 2025-11-27 07:56:33,097 [wrapper] apfmon messages muted
[2025-11-27 02:56:33] 2025-11-27 07:56:33,099 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:56:33] 2025-11-27 07:56:33,102 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:56:33]  *** Error codes and diagnostics ***
[2025-11-27 02:56:33]     "exeErrorCode": 0,
[2025-11-27 02:56:33]     "exeErrorDiag": "",
[2025-11-27 02:56:33]     "pilotErrorCode": 0,
[2025-11-27 02:56:33]     "pilotErrorDiag": "",
[2025-11-27 02:56:33]  *** Listing of results directory ***
[2025-11-27 02:56:33] total 1335036
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 04:01 queuedata.json
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-11-27 02:56:33] -rwx------. 1 boincer umatlas     36292 Nov 24 04:02 runpilot2-wrapper.sh
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:56:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-27 02:56:33] -rw-r--r--. 2 boincer umatlas 411346600 Nov 26 00:12 EVNT.47483658._001287.pool.root.1
[2025-11-27 02:56:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 02:56:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-27 02:56:33] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:12 input.tar.gz
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:12 pandaJob.out
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas        57 Nov 26 00:12 setup.sh.local
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas    991877 Nov 26 00:12 agis_schedconf.cvmfs.json
[2025-11-27 02:56:33] drwx------. 5 boincer umatlas      4096 Nov 26 00:12 pilot3
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:43 boinc_task_state.xml
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 02:54 init_data.xml
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas 922432452 Nov 27 02:54 HITS.47556149._002732.pool.root.1
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas      1063 Nov 27 02:55 memory_monitor_summary.json
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas   2562751 Nov 27 02:55 log.47556149._002732.job.log.tgz.1
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas      8606 Nov 27 02:55 heartbeat.json
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas        95 Nov 27 02:56 pilot_heartbeat.json
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:56 boinc_mmap_file
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:56 wrapper_checkpoint.txt
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas      4897 Nov 27 02:56 pilotlog.txt
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas  12127214 Nov 27 02:56 log.47556149._002732.job.log.1
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas       353 Nov 27 02:56 output.list
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:56 runtime_log
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas  14704640 Nov 27 02:56 result.tar.gz
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 02:56 runtime_log.err
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas       665 Nov 27 02:56 Qx8NDm0dhh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkzIKDmzqwPMn.diag
[2025-11-27 02:56:33] -rw-r--r--. 1 boincer umatlas     21925 Nov 27 02:56 stderr.txt
[2025-11-27 02:56:33] HITS file was successfully produced:
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas 922432452 Nov 27 02:54 shared/HITS.pool.root.1
[2025-11-27 02:56:33]  *** Contents of shared directory: ***
[2025-11-27 02:56:33] total 1317488
[2025-11-27 02:56:33] -rw-r--r--. 2 boincer umatlas 411346600 Nov 26 00:12 ATLAS.root_0
[2025-11-27 02:56:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-27 02:56:33] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:12 input.tar.gz
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas 922432452 Nov 27 02:54 HITS.pool.root.1
[2025-11-27 02:56:33] -rw-------. 1 boincer umatlas  14704640 Nov 27 02:56 result.tar.gz
02:56:55 (4148669): run_atlas exited; CPU time 219854.849397
02:56:55 (4148669): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN