Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:52 (1590938): wrapper (7.7.26015): starting
00:06:52 (1590938): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:06:52] Arguments: --nthreads 8
[2025-11-26 00:06:52] Threads: 8
[2025-11-26 00:06:52] Checking for CVMFS
[2025-11-26 00:06:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:06:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:06:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:06:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:06:54] 2.13.2.0 6956 33324 438004 153309 1 129 35249702 40960001 18783 16776704 0 124868260 99.632 113853310 38705 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:06:54] CVMFS is ok
[2025-11-26 00:06:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:06:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:06:54] Further information can be found at the LHC@home message board.
[2025-11-26 00:06:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:06:54] Checking for apptainer binary...
[2025-11-26 00:06:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:06:54] Running /usr/bin/apptainer --version
[2025-11-26 00:06:54] apptainer version 1.4.4-1.el9
[2025-11-26 00:06:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:06:55] c-206-34.aglt2.org
[2025-11-26 00:06:55] apptainer works
[2025-11-26 00:06:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:06:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:06:55] Starting ATLAS job with PandaID=6891106333
[2025-11-26 00:06:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:41:06]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:41:06] 2025-11-27 11:39:49,550 | INFO     | monitor loop #6812: job 0:6891106333 is in state 'finished'
[2025-11-27 06:41:06] 2025-11-27 11:39:49,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:06] 2025-11-27 11:39:50,143 | INFO     | time since job start (109927s) is within the limit (172800.0s)
[2025-11-27 06:41:06] 2025-11-27 11:39:52,054 | INFO     | monitor loop #6813: job 0:6891106333 is in state 'finished'
[2025-11-27 06:41:06] 2025-11-27 11:39:52,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:06] 2025-11-27 11:39:52,153 | INFO     | time since job start (109929s) is within the limit (172800.0s)
[2025-11-27 06:41:06] 2025-11-27 11:39:53,937 | INFO     | PID=1594795 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 06:41:06] 2025-11-27 11:39:53,937 | INFO     | .. there are 17 such processes running
[2025-11-27 06:41:06] 2025-11-27 11:39:54,560 | INFO     | monitor loop #6814: job 0:6891106333 is in state 'finished'
[2025-11-27 06:41:06] 2025-11-27 11:39:54,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:06] 2025-11-27 11:39:54,939 | INFO     | time since job start (109931s) is within the limit (172800.0s)
[2025-11-27 06:41:06] 2025-11-27 11:39:56,949 | INFO     | time since job start (109933s) is within the limit (172800.0s)
[2025-11-27 06:41:06] 2025-11-27 11:39:57,069 | INFO     | monitor loop #6815: job 0:6891106333 is in state 'finished'
[2025-11-27 06:41:06] 2025-11-27 11:39:57,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:41:06] 2025-11-27 11:39:58,204 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:41:06] 2025-11-27 11:39:58,213 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3231.277609375
[2025-11-27 06:41:06] 2025-11-27 11:39:58,236 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6891106333/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:41:06] 2025-11-27 11:39:58,237 | INFO     | extracted standard info from prmon json
[2025-11-27 06:41:06] 2025-11-27 11:39:58,237 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:41:06] 2025-11-27 11:39:58,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:41:06] 2025-11-27 11:39:58,288 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:41:06] 2025-11-27 11:39:58,290 | INFO     | sum of square deviations: 1805312074042.2185
[2025-11-27 06:41:06] 2025-11-27 11:39:58,415 | INFO     | sum of deviations: 12080382952445.293
[2025-11-27 06:41:06] 2025-11-27 11:39:58,415 | INFO     | mean x: 1764188733.470817
[2025-11-27 06:41:06] 2025-11-27 11:39:58,415 | INFO     | mean y: 2895792.2629238465
[2025-11-27 06:41:06] 2025-11-27 11:39:58,415 | INFO     | intersect: -11802307201.254812
[2025-11-27 06:41:06] 2025-11-27 11:39:58,417 | INFO     | chi2: 35.48015754999384
[2025-11-27 06:41:06] 2025-11-27 11:39:58,418 | INFO     | sum of square deviations: 1790301920369.1045
[2025-11-27 06:41:06] 2025-11-27 11:39:58,548 | INFO     | sum of deviations: 12734725781849.28
[2025-11-27 06:41:06] 2025-11-27 11:39:58,548 | INFO     | mean x: 1764188580.9777036
[2025-11-27 06:41:06] 2025-11-27 11:39:58,549 | INFO     | mean y: 2902439.3818283165
[2025-11-27 06:41:06] 2025-11-27 11:39:58,549 | INFO     | intersect: -12546074663.647236
[2025-11-27 06:41:06] 2025-11-27 11:39:58,558 | INFO     | chi2: 32.00705079418311
[2025-11-27 06:41:06] 2025-11-27 11:39:58,558 | INFO     | current chi2=32.00705079418311 (change=9.788870725607406 %)
[2025-11-27 06:41:06] 2025-11-27 11:39:58,558 | INFO     | right removable region: 1793
[2025-11-27 06:41:06] 2025-11-27 11:39:58,560 | INFO     | sum of square deviations: 1790299208919.1057
[2025-11-27 06:41:06] 2025-11-27 11:39:58,691 | INFO     | sum of deviations: 11288105754106.473
[2025-11-27 06:41:06] 2025-11-27 11:39:58,691 | INFO     | mean x: 1764188885.9777036
[2025-11-27 06:41:06] 2025-11-27 11:39:58,691 | INFO     | mean y: 2903840.5362318843
[2025-11-27 06:41:06] 2025-11-27 11:39:58,692 | INFO     | intersect: -11120572400.71112
[2025-11-27 06:41:06] 2025-11-27 11:39:58,693 | INFO     | chi2: 30.103419813897236
[2025-11-27 06:41:06] 2025-11-27 11:39:58,693 | INFO     | current chi2=30.103419813897236 (change=15.154210430211402 %)
[2025-11-27 06:41:06] 2025-11-27 11:39:58,693 | INFO     | left removable region: 10
[2025-11-27 06:41:06] 2025-11-27 11:39:58,699 | INFO     | sum of square deviations: 1757567552795.6648
[2025-11-27 06:41:06] 2025-11-27 11:39:58,825 | INFO     | sum of deviations: 11343437776190.45
[2025-11-27 06:41:06] 2025-11-27 11:39:58,826 | INFO     | mean x: 1764188855.4929893
[2025-11-27 06:41:06] 2025-11-27 11:39:58,826 | INFO     | mean y: 2919774.0347728548
[2025-11-27 06:41:06] 2025-11-27 11:39:58,826 | INFO     | intersect: -11383252254.403877
[2025-11-27 06:41:06] 2025-11-27 11:39:58,827 | INFO     | chi2: 20.99399815063933
[2025-11-27 06:41:06] 2025-11-27 11:39:58,828 | INFO     | current memory leak: 6.45 B/s (using 1783 data points, chi2=20.99)
[2025-11-27 06:41:06] 2025-11-27 11:39:58,833 | INFO     | could have reported an average CPU frequency of 3268 MHz (63 samples)
[2025-11-27 06:41:06] 2025-11-27 11:39:58,833 | INFO     | ..............................
[2025-11-27 06:41:06] 2025-11-27 11:39:58,833 | INFO     | . Timing measurements:
[2025-11-27 06:41:06] 2025-11-27 11:39:58,833 | INFO     | . get job = 0 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,833 | INFO     | . initial setup = 3 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,833 | INFO     | . payload setup = 94 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,834 | INFO     | . stage-in = 0 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,834 | INFO     | . payload execution = 109753 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,834 | INFO     | . stage-out = 5 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,834 | INFO     | . log creation = 1 s
[2025-11-27 06:41:06] 2025-11-27 11:39:58,834 | INFO     | ..............................
[2025-11-27 06:41:06] 2025-11-27 11:39:58,968 | INFO     | time since job start (109935s) is within the limit (172800.0s)
[2025-11-27 06:41:06] 2025-11-27 11:39:59,094 | INFO     | 
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | job summary report
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | --------------------------------------------------
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | PanDA job id: 6891106333
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | task id: 47483661
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | errors: (none)
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | pilot state: finished 
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | transexitcode: 0
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | exeerrorcode: 0
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | exeerrordiag: 
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | exitcode: 0
[2025-11-27 06:41:06] 2025-11-27 11:39:59,095 | INFO     | exitmsg: OK
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | cpuconsumptiontime: 206912 s
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | nevents: 1000
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | neventsw: 0
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | pid: 1604158
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | pgrp: 1604158
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | corecount: 8
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | event service: False
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | sizes: {0: 2284304, 11: 2284304, 22: 2284622, 33: 2284622, 109852: 2360478, 109858: 2369656, 109870: 2369846}
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | --------------------------------------------------
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | 
[2025-11-27 06:41:06] 2025-11-27 11:39:59,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 06:41:06] 2025-11-27 11:39:59,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:41:06] 2025-11-27 11:39:59,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:41:06] 2025-11-27 11:39:59,253 | INFO     | job 6891106333 has completed (purged errors)
[2025-11-27 06:41:06] 2025-11-27 11:39:59,253 | INFO     | overall cleanup function is called
[2025-11-27 06:41:06] 2025-11-27 11:40:00,283 | INFO     | --- collectZombieJob: --- 10, [1604158]
[2025-11-27 06:41:06] 2025-11-27 11:40:00,284 | INFO     | zombie collector waiting for pid 1604158
[2025-11-27 06:41:06] 2025-11-27 11:40:00,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:41:06] 2025-11-27 11:40:00,284 | INFO     | collected zombie processes
[2025-11-27 06:41:06] 2025-11-27 11:40:00,284 | INFO     | will attempt to kill all subprocesses of pid=1604158
[2025-11-27 06:41:06] 2025-11-27 11:40:00,952 | INFO     | process IDs to be killed: [1604158] (in reverse order)
[2025-11-27 06:41:06] 2025-11-27 11:40:01,110 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:41:06] 2025-11-27 11:40:01,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:41:06] 2025-11-27 11:40:01,129 | INFO     | did not find any defunct processes belonging to 1604158
[2025-11-27 06:41:06] 2025-11-27 11:40:01,206 | INFO     | did not find any defunct processes belonging to 1604158
[2025-11-27 06:41:06] 2025-11-27 11:40:01,216 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:41:06] 2025-11-27 11:40:01,216 | INFO     | ready for new job
[2025-11-27 06:41:06] 2025-11-27 11:40:01,216 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:41:06] 2025-11-27 11:40:01,233 | INFO     | ***************************************
[2025-11-27 06:41:06] 2025-11-27 11:40:01,233 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:41:06] 2025-11-27 11:40:01,233 | INFO     | ***************************************
[2025-11-27 06:41:06] 2025-11-27 11:40:01,233 | INFO     | 
[2025-11-27 06:41:06] 2025-11-27 11:40:01,241 | INFO     | architecture information:
[2025-11-27 06:41:06] 2025-11-27 11:40:01,244 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:41:06] 2025-11-27 11:40:01,308 | INFO     | cat /etc/os-release:
[2025-11-27 06:41:06] NAME="CentOS Linux"
[2025-11-27 06:41:06] VERSION="7 (Core)"
[2025-11-27 06:41:06] ID="centos"
[2025-11-27 06:41:06] ID_LIKE="rhel fedora"
[2025-11-27 06:41:06] VERSION_ID="7"
[2025-11-27 06:41:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:41:06] ANSI_COLOR="0;31"
[2025-11-27 06:41:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:41:06] HOME_URL="https://www.centos.org/"
[2025-11-27 06:41:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:41:06] 
[2025-11-27 06:41:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:41:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:41:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:41:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:41:06] 
[2025-11-27 06:41:06] 2025-11-27 11:40:01,308 | INFO     | ***************************************
[2025-11-27 06:41:06] 2025-11-27 11:40:01,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 06:41:06] 2025-11-27 11:40:01,841 | INFO     | sufficient remaining disk space (80180412416 B)
[2025-11-27 06:41:06] 2025-11-27 11:40:01,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:41:06] 2025-11-27 11:40:01,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:41:06] 2025-11-27 11:40:01,842 | INFO     | update_server=False
[2025-11-27 06:41:06] 2025-11-27 11:40:01,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:41:06] 2025-11-27 11:40:01,993 | INFO     | all payload control threads have been joined
[2025-11-27 06:41:06] 2025-11-27 11:40:02,102 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 06:41:06] 2025-11-27 11:40:02,103 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 06:41:06] 2025-11-27 11:40:02,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:41:06] 2025-11-27 11:40:02,103 | INFO     | will abort loop
[2025-11-27 06:41:06] 2025-11-27 11:40:02,121 | INFO     | all data control threads have been joined
[2025-11-27 06:41:06] 2025-11-27 11:40:02,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:41:06] 2025-11-27 11:40:02,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:41:06] 2025-11-27 11:40:02,848 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:02,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,004 | INFO     | [payload] control thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,109 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,128 | INFO     | [data] control thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,243 | INFO     | all job control threads have been joined
[2025-11-27 06:41:06] 2025-11-27 11:40:03,396 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,403 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,403 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,489 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,512 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:03,790 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:04,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:41:06] 2025-11-27 11:40:04,108 | INFO     | [job] validate thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:04,249 | INFO     | [job] control thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:04,321 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:05,113 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:06,290 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:41:06] 2025-11-27 11:40:32,830 | INFO     | PID=1594795 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 06:41:06] 2025-11-27 11:40:32,830 | INFO     | .. there are 17 such processes running
[2025-11-27 06:41:06] 2025-11-27 11:40:32,830 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:41:06] 2025-11-27 11:40:32,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:41:06] 2025-11-27 11:40:32,831 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:41:06] 2025-11-27 11:40:58,264 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:41:06] 2025-11-27 11:41:00,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695308396352)>', '<ExcThread(monitor, started 139694524319488)>']
[2025-11-27 06:41:06] 2025-11-27 11:41:00,995 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:41:06] 2025-11-27 11:41:00,996 | INFO     | [monitor] control thread has ended
[2025-11-27 06:41:06] 2025-11-27 11:41:05,164 | INFO     | all workflow threads have been joined
[2025-11-27 06:41:06] 2025-11-27 11:41:05,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:41:06] 2025-11-27 11:41:05,165 | INFO     | traces error code: 0
[2025-11-27 06:41:06] 2025-11-27 11:41:05,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:41:06] 2025-11-27 11:41:05,492 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:41:06] 2025-11-27 11:41:05,552 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:41:06] 2025-11-27 11:41:05,585 [wrapper] pilotpid: 1594795
[2025-11-27 06:41:06] 2025-11-27 11:41:05,618 [wrapper] Pilot exit status: 0
[2025-11-27 06:41:06] 2025-11-27 11:41:05,660 [wrapper] pandaids: 6891106333
[2025-11-27 06:41:06] 2025-11-27 11:41:05,810 [wrapper] cleanup supervisor_pilot 2422685 1594796
[2025-11-27 06:41:06] 2025-11-27 11:41:05,820 [wrapper] Test setup, not cleaning
[2025-11-27 06:41:06] 2025-11-27 11:41:05,834 [wrapper] apfmon messages muted
[2025-11-27 06:41:06] 2025-11-27 11:41:05,841 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:41:06] 2025-11-27 11:41:05,845 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:41:06]  *** Error codes and diagnostics ***
[2025-11-27 06:41:06]     "exeErrorCode": 0,
[2025-11-27 06:41:06]     "exeErrorDiag": "",
[2025-11-27 06:41:06]     "pilotErrorCode": 0,
[2025-11-27 06:41:06]     "pilotErrorDiag": "",
[2025-11-27 06:41:06]  *** Listing of results directory ***
[2025-11-27 06:41:06] total 1341304
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 06:41:06] -rwx------. 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:41:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:06 run_atlas
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:06 job.xml
[2025-11-27 06:41:06] -rw-r--r--. 2 boincer umatlas 410082665 Nov 26 00:06 EVNT.47483658._000259.pool.root.1
[2025-11-27 06:41:06] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:06 start_atlas.sh
[2025-11-27 06:41:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:06 shared
[2025-11-27 06:41:06] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:06 input.tar.gz
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:06 boinc_lockfile
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:06 pandaJob.out
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas    991877 Nov 26 00:07 agis_schedconf.cvmfs.json
[2025-11-27 06:41:06] drwx------. 5 boincer umatlas      4096 Nov 26 00:07 pilot3
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas       533 Nov 27 06:31 boinc_task_state.xml
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas      6903 Nov 27 06:37 init_data.xml
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas 926010552 Nov 27 06:38 HITS.47483661._002287.pool.root.1
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas      1051 Nov 27 06:39 memory_monitor_summary.json
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas        95 Nov 27 06:39 pilot_heartbeat.json
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas   2709871 Nov 27 06:39 log.47483661._002287.job.log.tgz.1
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas      8583 Nov 27 06:39 heartbeat.json
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:41 wrapper_checkpoint.txt
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:41 boinc_mmap_file
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas      5010 Nov 27 06:41 pilotlog.txt
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas  14034776 Nov 27 06:41 log.47483661._002287.job.log.1
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas       353 Nov 27 06:41 output.list
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:41 runtime_log
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas  16762880 Nov 27 06:41 result.tar.gz
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas      8705 Nov 27 06:41 runtime_log.err
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas       663 Nov 27 06:41 3oDODmPsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTQKODmizWmGo.diag
[2025-11-27 06:41:06] -rw-r--r--. 1 boincer umatlas     21823 Nov 27 06:41 stderr.txt
[2025-11-27 06:41:06] HITS file was successfully produced:
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas 926010552 Nov 27 06:38 shared/HITS.pool.root.1
[2025-11-27 06:41:06]  *** Contents of shared directory: ***
[2025-11-27 06:41:06] total 1321752
[2025-11-27 06:41:06] -rw-r--r--. 2 boincer umatlas 410082665 Nov 26 00:06 ATLAS.root_0
[2025-11-27 06:41:06] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:06 start_atlas.sh
[2025-11-27 06:41:06] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:06 input.tar.gz
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas 926010552 Nov 27 06:38 HITS.pool.root.1
[2025-11-27 06:41:06] -rw-------. 1 boincer umatlas  16762880 Nov 27 06:41 result.tar.gz
06:41:28 (1590938): run_atlas exited; CPU time 207711.186328
06:41:28 (1590938): called boinc_finish(0)

</stderr_txt>
]]>

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