Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:03 (3637074): wrapper (7.7.26015): starting
00:10:03 (3637074): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:10:03] Arguments: --nthreads 9
[2025-11-26 00:10:03] Threads: 9
[2025-11-26 00:10:03] Checking for CVMFS
[2025-11-26 00:10:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:06] 2.13.3.0 10978 29565 347520 153309 2 269 21690940 40960000 15767 16776704 0 67466191 99.588 89855215 39265 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:10:06] CVMFS is ok
[2025-11-26 00:10:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:06] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:06] Checking for apptainer binary...
[2025-11-26 00:10:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:06] Running /usr/bin/apptainer --version
[2025-11-26 00:10:06] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:07] c6-8-12-1.aglt2.org
[2025-11-26 00:10:07] apptainer works
[2025-11-26 00:10:07] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:07] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:07] Starting ATLAS job with PandaID=6891106809
[2025-11-26 00:10:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:57:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:57:24] 2025-11-27 07:46:31,271 | INFO     | monitor loop #5397: job 0:6891106809 is in state 'finished'
[2025-11-27 02:57:24] 2025-11-27 07:46:31,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:57:24] 2025-11-27 07:46:33,821 | INFO     | monitor loop #5398: job 0:6891106809 is in state 'finished'
[2025-11-27 02:57:24] 2025-11-27 07:46:33,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:57:24] 2025-11-27 07:46:36,713 | INFO     | PID=3647164 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:57:24] 2025-11-27 07:46:36,713 | INFO     | .. there are 20 such processes running
[2025-11-27 02:57:24] 2025-11-27 07:46:36,734 | INFO     | monitor loop #5399: job 0:6891106809 is in state 'finished'
[2025-11-27 02:57:24] 2025-11-27 07:46:36,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:57:24] 2025-11-27 07:46:37,715 | INFO     | time since job start (95713s) is within the limit (172800.0s)
[2025-11-27 02:57:24] 2025-11-27 07:46:39,252 | INFO     | monitor loop #5400: job 0:6891106809 is in state 'finished'
[2025-11-27 02:57:24] 2025-11-27 07:46:39,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:57:24] 2025-11-27 07:46:39,738 | INFO     | time since job start (95715s) is within the limit (172800.0s)
[2025-11-27 02:57:24] 2025-11-27 07:46:41,745 | INFO     | time since job start (95717s) is within the limit (172800.0s)
[2025-11-27 02:57:24] 2025-11-27 07:46:41,803 | INFO     | monitor loop #5401: job 0:6891106809 is in state 'finished'
[2025-11-27 02:57:24] 2025-11-27 07:46:41,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:57:24] 2025-11-27 07:46:41,989 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:57:24] 2025-11-27 07:46:41,998 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2790.8879642857146
[2025-11-27 02:57:24] 2025-11-27 07:46:42,008 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891106809/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:57:24] 2025-11-27 07:46:42,009 | INFO     | extracted standard info from prmon json
[2025-11-27 02:57:24] 2025-11-27 07:46:42,009 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:57:24] 2025-11-27 07:46:42,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:57:24] 2025-11-27 07:46:42,037 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:57:24] 2025-11-27 07:46:42,056 | INFO     | sum of square deviations: 1190839905516.2058
[2025-11-27 02:57:24] 2025-11-27 07:46:42,222 | INFO     | sum of deviations: 7163852691634.614
[2025-11-27 02:57:24] 2025-11-27 07:46:42,229 | INFO     | mean x: 1764181779.6219668
[2025-11-27 02:57:24] 2025-11-27 07:46:42,229 | INFO     | mean y: 3037186.3135376754
[2025-11-27 02:57:24] 2025-11-27 07:46:42,229 | INFO     | intersect: -10609924582.883389
[2025-11-27 02:57:24] 2025-11-27 07:46:42,231 | INFO     | chi2: 22.113694779524277
[2025-11-27 02:57:24] 2025-11-27 07:46:42,244 | INFO     | sum of square deviations: 1179471735438.4797
[2025-11-27 02:57:24] 2025-11-27 07:46:42,364 | INFO     | sum of deviations: 7717501480038.164
[2025-11-27 02:57:24] 2025-11-27 07:46:42,369 | INFO     | mean x: 1764181627.1351697
[2025-11-27 02:57:24] 2025-11-27 07:46:42,369 | INFO     | mean y: 3044613.274183216
[2025-11-27 02:57:24] 2025-11-27 07:46:42,369 | INFO     | intersect: -11540321717.085804
[2025-11-27 02:57:24] 2025-11-27 07:46:42,371 | INFO     | chi2: 18.891737791666603
[2025-11-27 02:57:24] 2025-11-27 07:46:42,371 | INFO     | current chi2=18.891737791666603 (change=14.569962278944804 %)
[2025-11-27 02:57:24] 2025-11-27 07:46:42,371 | INFO     | right removable region: 1560
[2025-11-27 02:57:24] 2025-11-27 07:46:42,377 | INFO     | sum of square deviations: 1179467797888.4802
[2025-11-27 02:57:24] 2025-11-27 07:46:42,456 | INFO     | sum of deviations: 6473093574356.49
[2025-11-27 02:57:24] 2025-11-27 07:46:42,456 | INFO     | mean x: 1764181932.1351697
[2025-11-27 02:57:24] 2025-11-27 07:46:42,456 | INFO     | mean y: 3046449.552210122
[2025-11-27 02:57:24] 2025-11-27 07:46:42,457 | INFO     | intersect: -9679044701.510931
[2025-11-27 02:57:24] 2025-11-27 07:46:42,462 | INFO     | chi2: 17.588878804616478
[2025-11-27 02:57:24] 2025-11-27 07:46:42,463 | INFO     | current chi2=17.588878804616478 (change=20.461600922056046 %)
[2025-11-27 02:57:24] 2025-11-27 07:46:42,463 | INFO     | left removable region: 10
[2025-11-27 02:57:24] 2025-11-27 07:46:42,464 | INFO     | sum of square deviations: 1154709226621.8755
[2025-11-27 02:57:24] 2025-11-27 07:46:42,587 | INFO     | sum of deviations: 6557994419218.826
[2025-11-27 02:57:24] 2025-11-27 07:46:42,588 | INFO     | mean x: 1764181901.663871
[2025-11-27 02:57:24] 2025-11-27 07:46:42,588 | INFO     | mean y: 3063938.110967742
[2025-11-27 02:57:24] 2025-11-27 07:46:42,588 | INFO     | intersect: -10016337309.288177
[2025-11-27 02:57:24] 2025-11-27 07:46:42,598 | INFO     | chi2: 10.108636958392953
[2025-11-27 02:57:24] 2025-11-27 07:46:42,598 | INFO     | current memory leak: 5.68 B/s (using 1550 data points, chi2=10.11)
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | could have reported an average CPU frequency of 2911 MHz (55 samples)
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | ..............................
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . Timing measurements:
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . get job = 0 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . initial setup = 9 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . payload setup = 55 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . stage-in = 0 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . payload execution = 95545 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,600 | INFO     | . stage-out = 14 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,601 | INFO     | . log creation = 3 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,601 | INFO     | ..............................
[2025-11-27 02:57:24] 2025-11-27 07:46:42,912 | INFO     | 
[2025-11-27 02:57:24] 2025-11-27 07:46:42,912 | INFO     | job summary report
[2025-11-27 02:57:24] 2025-11-27 07:46:42,912 | INFO     | --------------------------------------------------
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | PanDA job id: 6891106809
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | task id: 47483661
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | errors: (none)
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | pilot state: finished 
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | transexitcode: 0
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | exeerrorcode: 0
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | exeerrordiag: 
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | exitcode: 0
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | exitmsg: OK
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | cpuconsumptiontime: 241900 s
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | nevents: 1000
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | neventsw: 0
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | pid: 3663077
[2025-11-27 02:57:24] 2025-11-27 07:46:42,913 | INFO     | pgrp: 3663077
[2025-11-27 02:57:24] 2025-11-27 07:46:42,914 | INFO     | corecount: 9
[2025-11-27 02:57:24] 2025-11-27 07:46:42,914 | INFO     | event service: False
[2025-11-27 02:57:24] 2025-11-27 07:46:42,914 | INFO     | sizes: {0: 2284133, 1: 2284332, 13: 2284332, 24: 2284388, 31: 2284678, 34: 2284706, 95605: 2353157, 95621: 2362151, 95623: 2362207, 95650: 2362453}
[2025-11-27 02:57:24] 2025-11-27 07:46:42,914 | INFO     | --------------------------------------------------
[2025-11-27 02:57:24] 2025-11-27 07:46:42,914 | INFO     | 
[2025-11-27 02:57:24] 2025-11-27 07:46:42,914 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 02:57:24] 2025-11-27 07:46:43,042 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,042 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,042 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,044 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:57:24] 2025-11-27 07:46:43,044 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,044 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:57:24] 2025-11-27 07:46:43,044 | INFO     | job 6891106809 has completed (purged errors)
[2025-11-27 02:57:24] 2025-11-27 07:46:43,044 | INFO     | overall cleanup function is called
[2025-11-27 02:57:24] 2025-11-27 07:46:44,064 | INFO     | --- collectZombieJob: --- 10, [3663077]
[2025-11-27 02:57:24] 2025-11-27 07:46:44,065 | INFO     | zombie collector waiting for pid 3663077
[2025-11-27 02:57:24] 2025-11-27 07:46:44,066 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:57:24] 2025-11-27 07:46:44,066 | INFO     | collected zombie processes
[2025-11-27 02:57:24] 2025-11-27 07:46:44,066 | INFO     | will attempt to kill all subprocesses of pid=3663077
[2025-11-27 02:57:24] 2025-11-27 07:46:45,164 | INFO     | process IDs to be killed: [3663077] (in reverse order)
[2025-11-27 02:57:24] 2025-11-27 07:46:45,779 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:57:24] 2025-11-27 07:46:45,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:57:24] 2025-11-27 07:46:45,833 | INFO     | did not find any defunct processes belonging to 3663077
[2025-11-27 02:57:24] 2025-11-27 07:46:45,847 | INFO     | did not find any defunct processes belonging to 3663077
[2025-11-27 02:57:24] 2025-11-27 07:46:45,853 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:57:24] 2025-11-27 07:46:45,853 | INFO     | ready for new job
[2025-11-27 02:57:24] 2025-11-27 07:46:45,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:57:24] 2025-11-27 07:46:45,874 | INFO     | ***************************************
[2025-11-27 02:57:24] 2025-11-27 07:46:45,875 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:57:24] 2025-11-27 07:46:45,875 | INFO     | ***************************************
[2025-11-27 02:57:24] 2025-11-27 07:46:45,875 | INFO     | 
[2025-11-27 02:57:24] 2025-11-27 07:46:45,895 | INFO     | architecture information:
[2025-11-27 02:57:24] 2025-11-27 07:46:45,903 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:57:24] 2025-11-27 07:46:45,950 | INFO     | cat /etc/os-release:
[2025-11-27 02:57:24] NAME="CentOS Linux"
[2025-11-27 02:57:24] VERSION="7 (Core)"
[2025-11-27 02:57:24] ID="centos"
[2025-11-27 02:57:24] ID_LIKE="rhel fedora"
[2025-11-27 02:57:24] VERSION_ID="7"
[2025-11-27 02:57:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:57:24] ANSI_COLOR="0;31"
[2025-11-27 02:57:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:57:24] HOME_URL="https://www.centos.org/"
[2025-11-27 02:57:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:57:24] 
[2025-11-27 02:57:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:57:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:57:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:57:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:57:24] 
[2025-11-27 02:57:24] 2025-11-27 07:46:45,950 | INFO     | ***************************************
[2025-11-27 02:57:24] 2025-11-27 07:46:46,456 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 02:57:24] 2025-11-27 07:46:46,634 | INFO     | sufficient remaining disk space (50171215872 B)
[2025-11-27 02:57:24] 2025-11-27 07:46:46,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:57:24] 2025-11-27 07:46:46,635 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:57:24] 2025-11-27 07:46:46,635 | INFO     | update_server=False
[2025-11-27 02:57:24] 2025-11-27 07:46:46,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:57:24] 2025-11-27 07:46:46,843 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 02:57:24] 2025-11-27 07:46:46,843 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 02:57:24] 2025-11-27 07:46:46,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:57:24] 2025-11-27 07:46:46,843 | INFO     | will abort loop
[2025-11-27 02:57:24] 2025-11-27 07:46:47,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:57:24] 2025-11-27 07:46:47,207 | INFO     | all payload control threads have been joined
[2025-11-27 02:57:24] 2025-11-27 07:46:47,469 | INFO     | all data control threads have been joined
[2025-11-27 02:57:24] 2025-11-27 07:46:47,618 | INFO     | all job control threads have been joined
[2025-11-27 02:57:24] 2025-11-27 07:46:47,642 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,709 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,844 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,844 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,845 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,845 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,849 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:47,939 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:57:24] 2025-11-27 07:46:48,213 | INFO     | [payload] control thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:48,474 | INFO     | [data] control thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:48,624 | INFO     | [job] control thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:48,719 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:48,859 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:48,924 | INFO     | [job] validate thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:48,946 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:49,088 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:46:49,191 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:57:24] 2025-11-27 07:46:53,220 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:57:24] 2025-11-27 07:47:19,895 | INFO     | PID=3647164 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:57:24] 2025-11-27 07:47:19,895 | INFO     | .. there are 20 such processes running
[2025-11-27 02:57:24] 2025-11-27 07:47:19,896 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:57:24] 2025-11-27 07:47:19,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:57:24] 2025-11-27 07:47:19,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:57:24] 2025-11-27 07:47:23,938 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:57:24] 2025-11-27 07:47:24,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944282167104)>', '<ExcThread(monitor, started 139943657600768)>']
[2025-11-27 02:57:24] 2025-11-27 07:47:24,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:57:24] 2025-11-27 07:47:24,928 | INFO     | [monitor] control thread has ended
[2025-11-27 02:57:24] 2025-11-27 07:47:29,093 | INFO     | all workflow threads have been joined
[2025-11-27 02:57:24] 2025-11-27 07:47:29,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:57:24] 2025-11-27 07:47:29,093 | INFO     | traces error code: 0
[2025-11-27 02:57:24] 2025-11-27 07:47:29,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:57:24] 2025-11-27 07:47:32,934 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:57:24] 2025-11-27 07:47:32,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:57:24] 2025-11-27 07:47:32,999 [wrapper] pilotpid: 3647164
[2025-11-27 02:57:24] 2025-11-27 07:47:33,182 [wrapper] Pilot exit status: 0
[2025-11-27 02:57:24] 2025-11-27 07:47:33,328 [wrapper] pandaids: 6891106809
[2025-11-27 02:57:24] 2025-11-27 07:47:33,571 [wrapper] cleanup supervisor_pilot 3570064 3647165
[2025-11-27 02:57:24] 2025-11-27 07:47:33,575 [wrapper] Test setup, not cleaning
[2025-11-27 02:57:24] 2025-11-27 07:47:33,579 [wrapper] apfmon messages muted
[2025-11-27 02:57:24] 2025-11-27 07:47:33,583 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:57:24] 2025-11-27 07:47:33,587 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:57:24]  *** Error codes and diagnostics ***
[2025-11-27 02:57:24]     "exeErrorCode": 0,
[2025-11-27 02:57:24]     "exeErrorDiag": "",
[2025-11-27 02:57:24]     "pilotErrorCode": 0,
[2025-11-27 02:57:24]     "pilotErrorDiag": "",
[2025-11-27 02:57:24]  *** Listing of results directory ***
[2025-11-27 02:57:24] total 1338924
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 02:57:24] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:57:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-27 02:57:24] -rw-r--r--. 2 boincer umatlas 410695556 Nov 26 00:10 EVNT.47483658._000279.pool.root.1
[2025-11-27 02:57:24] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:10 start_atlas.sh
[2025-11-27 02:57:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-27 02:57:24] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:10 input.tar.gz
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:10 pandaJob.out
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-27 02:57:24] drwx------. 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:19 boinc_task_state.xml
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas 927847876 Nov 27 02:45 HITS.47483661._002487.pool.root.1
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas      1058 Nov 27 02:45 memory_monitor_summary.json
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas   2640205 Nov 27 02:46 log.47483661._002487.job.log.tgz.1
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas      8622 Nov 27 02:46 heartbeat.json
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas        95 Nov 27 02:46 pilot_heartbeat.json
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas      5010 Nov 27 02:47 pilotlog.txt
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas  11659514 Nov 27 02:47 log.47483661._002487.job.log.1
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas       353 Nov 27 02:47 output.list
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:47 runtime_log
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas  14315520 Nov 27 02:47 result.tar.gz
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas      8709 Nov 27 02:47 runtime_log.err
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas       661 Nov 27 02:47 4kBNDmmtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdSKODmdiaQGo.diag
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 02:54 init_data.xml
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:57 wrapper_checkpoint.txt
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:57 boinc_mmap_file
[2025-11-27 02:57:24] -rw-r--r--. 1 boincer umatlas     21815 Nov 27 02:57 stderr.txt
[2025-11-27 02:57:24] HITS file was successfully produced:
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas 927847876 Nov 27 02:45 shared/HITS.pool.root.1
[2025-11-27 02:57:24]  *** Contents of shared directory: ***
[2025-11-27 02:57:24] total 1321760
[2025-11-27 02:57:24] -rw-r--r--. 2 boincer umatlas 410695556 Nov 26 00:10 ATLAS.root_0
[2025-11-27 02:57:24] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:10 start_atlas.sh
[2025-11-27 02:57:24] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:10 input.tar.gz
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas 927847876 Nov 27 02:45 HITS.pool.root.1
[2025-11-27 02:57:24] -rw-------. 1 boincer umatlas  14315520 Nov 27 02:47 result.tar.gz
02:58:27 (3637074): run_atlas exited; CPU time 243737.209504
02:58:27 (3637074): called boinc_finish(0)

</stderr_txt>
]]>

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