Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:38 (3257448): wrapper (7.7.26015): starting
00:06:38 (3257448): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:06:38] Arguments: --nthreads 8
[2025-11-26 00:06:38] Threads: 8
[2025-11-26 00:06:38] Checking for CVMFS
[2025-11-26 00:06:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:06:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:06:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:06:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:06:40] 2.13.2.0 7884 36208 198184 153309 3 578 35667061 40960001 28877 16776704 0 375753757 99.731 265731149 47159 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:06:40] CVMFS is ok
[2025-11-26 00:06:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:06:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:06:40] Further information can be found at the LHC@home message board.
[2025-11-26 00:06:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:06:40] Checking for apptainer binary...
[2025-11-26 00:06:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:06:40] Running /usr/bin/apptainer --version
[2025-11-26 00:06:40] apptainer version 1.4.4-1.el9
[2025-11-26 00:06:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:06:41] c-208-38.aglt2.org
[2025-11-26 00:06:41] apptainer works
[2025-11-26 00:06:41] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:06:41] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:06:41] Starting ATLAS job with PandaID=6891107110
[2025-11-26 00:06:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:10 (3257448): BOINC client no longer exists - exiting
00:20:10 (3257448): timer handler: client dead, exiting
00:21:19 (3448902): wrapper (7.7.26015): starting
00:21:19 (3448902): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:21:19] Arguments: --nthreads 8
[2025-11-26 00:21:19] Threads: 8
[2025-11-26 00:21:19] This job has been restarted, cleaning up previous attempt
[2025-11-26 00:21:19] Checking for CVMFS
[2025-11-26 00:21:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:21:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:21:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:21:20] 2.13.2.0 7884 36222 185672 153311 1 153 35728175 40960001 17577 16776704 0 376110765 99.731 265733744 47159 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:21:20] CVMFS is ok
[2025-11-26 00:21:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:21:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:21:20] Further information can be found at the LHC@home message board.
[2025-11-26 00:21:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:21:20] Checking for apptainer binary...
[2025-11-26 00:21:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:21:20] Running /usr/bin/apptainer --version
[2025-11-26 00:21:20] apptainer version 1.4.4-1.el9
[2025-11-26 00:21:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:21:20] c-208-38.aglt2.org
[2025-11-26 00:21:20] apptainer works
[2025-11-26 00:21:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:21:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:21:20] Starting ATLAS job with PandaID=6891107110
[2025-11-26 00:21:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:30:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:30:41] 2025-11-26 23:29:35,189 | INFO     | time since job start (65283s) is within the limit (172800.0s)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,455 | INFO     | monitor loop #3727: job 0:6891107110 is in state 'finished'
[2025-11-26 18:30:41] 2025-11-26 23:29:35,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,568 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:30:41] 2025-11-26 23:29:35,575 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3763.643382812499
[2025-11-26 18:30:41] 2025-11-26 23:29:35,598 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6891107110/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,598 | INFO     | extracted standard info from prmon json
[2025-11-26 18:30:41] 2025-11-26 23:29:35,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:30:41] 2025-11-26 23:29:35,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:30:41] 2025-11-26 23:29:35,607 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:30:41] 2025-11-26 23:29:35,607 | INFO     | sum of square deviations: 378754958018.6605
[2025-11-26 18:30:41] 2025-11-26 23:29:35,621 | INFO     | sum of deviations: 2156245897501.83
[2025-11-26 18:30:41] 2025-11-26 23:29:35,621 | INFO     | mean x: 1764167104.2619271
[2025-11-26 18:30:41] 2025-11-26 23:29:35,621 | INFO     | mean y: 2876060.0327408793
[2025-11-26 18:30:41] 2025-11-26 23:29:35,621 | INFO     | intersect: -10040498952.064259
[2025-11-26 18:30:41] 2025-11-26 23:29:35,621 | INFO     | chi2: 8.063294584437747
[2025-11-26 18:30:41] 2025-11-26 23:29:35,622 | INFO     | sum of square deviations: 373465252102.95917
[2025-11-26 18:30:41] 2025-11-26 23:29:35,643 | INFO     | sum of deviations: 2525835014731.45
[2025-11-26 18:30:41] 2025-11-26 23:29:35,643 | INFO     | mean x: 1764166951.7725563
[2025-11-26 18:30:41] 2025-11-26 23:29:35,643 | INFO     | mean y: 2886716.2415413535
[2025-11-26 18:30:41] 2025-11-26 23:29:35,643 | INFO     | intersect: -11928597226.448572
[2025-11-26 18:30:41] 2025-11-26 23:29:35,644 | INFO     | chi2: 4.694747148252825
[2025-11-26 18:30:41] 2025-11-26 23:29:35,644 | INFO     | current chi2=4.694747148252825 (change=41.77631613120347 %)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,644 | INFO     | sum of square deviations: 368225035487.014
[2025-11-26 18:30:41] 2025-11-26 23:29:35,668 | INFO     | sum of deviations: 2832268611516.841
[2025-11-26 18:30:41] 2025-11-26 23:29:35,669 | INFO     | mean x: 1764166799.283286
[2025-11-26 18:30:41] 2025-11-26 23:29:35,669 | INFO     | mean y: 2895623.8271954674
[2025-11-26 18:30:41] 2025-11-26 23:29:35,669 | INFO     | intersect: -13566508326.346079
[2025-11-26 18:30:41] 2025-11-26 23:29:35,669 | INFO     | chi2: 1.9484738802109338
[2025-11-26 18:30:41] 2025-11-26 23:29:35,669 | INFO     | current chi2=1.9484738802109338 (change=58.49672370670551 %)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,670 | INFO     | sum of square deviations: 363034011256.91095
[2025-11-26 18:30:41] 2025-11-26 23:29:35,694 | INFO     | sum of deviations: 2831445593476.854
[2025-11-26 18:30:41] 2025-11-26 23:29:35,694 | INFO     | mean x: 1764166646.7931688
[2025-11-26 18:30:41] 2025-11-26 23:29:35,694 | INFO     | mean y: 2895596.6185958255
[2025-11-26 18:30:41] 2025-11-26 23:29:35,694 | INFO     | intersect: -13756536642.049551
[2025-11-26 18:30:41] 2025-11-26 23:29:35,695 | INFO     | chi2: 1.8754999120886042
[2025-11-26 18:30:41] 2025-11-26 23:29:35,695 | INFO     | current chi2=1.8754999120886042 (change=3.7451858535783775 %)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,695 | INFO     | right removable region: 1053
[2025-11-26 18:30:41] 2025-11-26 23:29:35,695 | INFO     | sum of square deviations: 373464102569.661
[2025-11-26 18:30:41] 2025-11-26 23:29:35,721 | INFO     | sum of deviations: 1932297293541.1118
[2025-11-26 18:30:41] 2025-11-26 23:29:35,721 | INFO     | mean x: 1764167256.767857
[2025-11-26 18:30:41] 2025-11-26 23:29:35,721 | INFO     | mean y: 2882504.704887218
[2025-11-26 18:30:41] 2025-11-26 23:29:35,721 | INFO     | intersect: -9124890665.865175
[2025-11-26 18:30:41] 2025-11-26 23:29:35,721 | INFO     | chi2: 6.516747041546872
[2025-11-26 18:30:41] 2025-11-26 23:29:35,722 | INFO     | current chi2=6.516747041546872 (change=19.180094770141842 %)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,722 | INFO     | left removable region: 10
[2025-11-26 18:30:41] 2025-11-26 23:29:35,722 | INFO     | sum of square deviations: 351784342023.0701
[2025-11-26 18:30:41] 2025-11-26 23:29:35,747 | INFO     | sum of deviations: 2509881436825.8105
[2025-11-26 18:30:41] 2025-11-26 23:29:35,751 | INFO     | mean x: 1764166921.3000958
[2025-11-26 18:30:41] 2025-11-26 23:29:35,751 | INFO     | mean y: 2904799.975071908
[2025-11-26 18:30:41] 2025-11-26 23:29:35,751 | INFO     | intersect: -12583925477.260153
[2025-11-26 18:30:41] 2025-11-26 23:29:35,752 | INFO     | chi2: 0.21989303789374615
[2025-11-26 18:30:41] 2025-11-26 23:29:35,752 | INFO     | current memory leak: 7.13 B/s (using 1043 data points, chi2=0.22)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,753 | INFO     | could have reported an average CPU frequency of 3768 MHz (39 samples)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,753 | INFO     | ..............................
[2025-11-26 18:30:41] 2025-11-26 23:29:35,753 | INFO     | . Timing measurements:
[2025-11-26 18:30:41] 2025-11-26 23:29:35,753 | INFO     | . get job = 0 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,753 | INFO     | . initial setup = 0 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,753 | INFO     | . payload setup = 7 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,754 | INFO     | . stage-in = 0 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,754 | INFO     | . payload execution = 65217 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,754 | INFO     | . stage-out = 6 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,754 | INFO     | . log creation = 1 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,754 | INFO     | ..............................
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | 
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | job summary report
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | --------------------------------------------------
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | PanDA job id: 6891107110
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | task id: 47483661
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | errors: (none)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | pilot state: finished 
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | transexitcode: 0
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | exeerrorcode: 0
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | exeerrordiag: 
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | exitcode: 0
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | exitmsg: OK
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | cpuconsumptiontime: 144190 s
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | nevents: 1000
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | neventsw: 0
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | pid: 3579244
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | pgrp: 3579244
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | corecount: 8
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | event service: False
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | sizes: {0: 2284305, 6: 2284567, 10: 2284595, 65228: 2339553, 65229: 2339552, 65236: 2348604, 65237: 2348788, 65267: 2349034}
[2025-11-26 18:30:41] 2025-11-26 23:29:35,864 | INFO     | --------------------------------------------------
[2025-11-26 18:30:41] 2025-11-26 23:29:35,865 | INFO     | 
[2025-11-26 18:30:41] 2025-11-26 23:29:35,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-26 18:30:41] 2025-11-26 23:29:35,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:30:41] 2025-11-26 23:29:35,990 | INFO     | job 6891107110 has completed (purged errors)
[2025-11-26 18:30:41] 2025-11-26 23:29:35,990 | INFO     | overall cleanup function is called
[2025-11-26 18:30:41] 2025-11-26 23:29:37,011 | INFO     | --- collectZombieJob: --- 10, [3579244]
[2025-11-26 18:30:41] 2025-11-26 23:29:37,011 | INFO     | zombie collector waiting for pid 3579244
[2025-11-26 18:30:41] 2025-11-26 23:29:37,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:30:41] 2025-11-26 23:29:37,012 | INFO     | collected zombie processes
[2025-11-26 18:30:41] 2025-11-26 23:29:37,012 | INFO     | will attempt to kill all subprocesses of pid=3579244
[2025-11-26 18:30:41] 2025-11-26 23:29:37,706 | INFO     | process IDs to be killed: [3579244] (in reverse order)
[2025-11-26 18:30:41] 2025-11-26 23:29:37,901 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:30:41] 2025-11-26 23:29:37,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:30:41] 2025-11-26 23:29:37,926 | INFO     | did not find any defunct processes belonging to 3579244
[2025-11-26 18:30:41] 2025-11-26 23:29:37,950 | INFO     | did not find any defunct processes belonging to 3579244
[2025-11-26 18:30:41] 2025-11-26 23:29:37,955 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:30:41] 2025-11-26 23:29:37,957 | INFO     | ready for new job
[2025-11-26 18:30:41] 2025-11-26 23:29:37,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:30:41] 2025-11-26 23:29:37,973 | INFO     | ***************************************
[2025-11-26 18:30:41] 2025-11-26 23:29:37,973 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:30:41] 2025-11-26 23:29:37,974 | INFO     | ***************************************
[2025-11-26 18:30:41] 2025-11-26 23:29:37,974 | INFO     | 
[2025-11-26 18:30:41] 2025-11-26 23:29:38,002 | INFO     | architecture information:
[2025-11-26 18:30:41] 2025-11-26 23:29:38,013 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:30:41] 2025-11-26 23:29:38,074 | INFO     | cat /etc/os-release:
[2025-11-26 18:30:41] NAME="CentOS Linux"
[2025-11-26 18:30:41] VERSION="7 (Core)"
[2025-11-26 18:30:41] ID="centos"
[2025-11-26 18:30:41] ID_LIKE="rhel fedora"
[2025-11-26 18:30:41] VERSION_ID="7"
[2025-11-26 18:30:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:30:41] ANSI_COLOR="0;31"
[2025-11-26 18:30:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:30:41] HOME_URL="https://www.centos.org/"
[2025-11-26 18:30:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:30:41] 
[2025-11-26 18:30:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:30:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:30:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:30:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:30:41] 
[2025-11-26 18:30:41] 2025-11-26 23:29:38,074 | INFO     | ***************************************
[2025-11-26 18:30:41] 2025-11-26 23:29:38,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-26 18:30:41] 2025-11-26 23:29:38,610 | INFO     | sufficient remaining disk space (167087439872 B)
[2025-11-26 18:30:41] 2025-11-26 23:29:38,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:30:41] 2025-11-26 23:29:38,610 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:30:41] 2025-11-26 23:29:38,610 | INFO     | update_server=False
[2025-11-26 18:30:41] 2025-11-26 23:29:38,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:30:41] 2025-11-26 23:29:38,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:30:41] 2025-11-26 23:29:38,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:30:41] 2025-11-26 23:29:38,966 | INFO     | aborting loop
[2025-11-26 18:30:41] 2025-11-26 23:29:39,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:30:41] 2025-11-26 23:29:39,304 | INFO     | all payload control threads have been joined
[2025-11-26 18:30:41] 2025-11-26 23:29:39,431 | INFO     | all data control threads have been joined
[2025-11-26 18:30:41] 2025-11-26 23:29:39,616 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:39,709 | INFO     | all job control threads have been joined
[2025-11-26 18:30:41] 2025-11-26 23:29:39,971 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,167 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,310 | INFO     | [payload] control thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,380 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,405 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,437 | INFO     | [data] control thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,575 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,618 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,706 | INFO     | [job] validate thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,715 | INFO     | [job] control thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,731 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:30:41] 2025-11-26 23:29:40,901 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:40,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:41,885 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:29:43,148 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:30:41] 2025-11-26 23:30:08,855 | INFO     | PID=3496823 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:30:41] 2025-11-26 23:30:08,856 | INFO     | .. there are 29 such processes running
[2025-11-26 18:30:41] 2025-11-26 23:30:08,856 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:30:41] 2025-11-26 23:30:08,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:30:41] 2025-11-26 23:30:08,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:30:41] 2025-11-26 23:30:32,869 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:30:41] 2025-11-26 23:30:34,707 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222977394496)>', '<ExcThread(monitor, started 140222708815616)>']
[2025-11-26 18:30:41] 2025-11-26 23:30:35,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:30:41] 2025-11-26 23:30:35,020 | INFO     | [monitor] control thread has ended
[2025-11-26 18:30:41] 2025-11-26 23:30:39,733 | INFO     | all workflow threads have been joined
[2025-11-26 18:30:41] 2025-11-26 23:30:39,733 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:30:41] 2025-11-26 23:30:39,734 | INFO     | traces error code: 0
[2025-11-26 18:30:41] 2025-11-26 23:30:39,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:30:41] 2025-11-26 23:30:39,978 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:30:41] 2025-11-26 23:30:40,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:30:41] 2025-11-26 23:30:40,038 [wrapper] pilotpid: 3496823
[2025-11-26 18:30:41] 2025-11-26 23:30:40,079 [wrapper] Pilot exit status: 0
[2025-11-26 18:30:41] 2025-11-26 23:30:40,209 [wrapper] pandaids: 6891107110 6891107110
[2025-11-26 18:30:41] 2025-11-26 23:30:40,901 [wrapper] cleanup supervisor_pilot  407201 3496824
[2025-11-26 18:30:41] 2025-11-26 23:30:40,947 [wrapper] Test setup, not cleaning
[2025-11-26 18:30:41] 2025-11-26 23:30:40,997 [wrapper] apfmon messages muted
[2025-11-26 18:30:41] 2025-11-26 23:30:41,037 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:30:41] 2025-11-26 23:30:41,085 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:30:41]  *** Error codes and diagnostics ***
[2025-11-26 18:30:41]     "exeErrorCode": 0,
[2025-11-26 18:30:41]     "exeErrorDiag": "",
[2025-11-26 18:30:41]     "pilotErrorCode": 0,
[2025-11-26 18:30:41]     "pilotErrorDiag": "",
[2025-11-26 18:30:41]  *** Listing of results directory ***
[2025-11-26 18:30:41] total 1725724
[2025-11-26 18:30:41] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 02:02 pilot3.tar.gz
[2025-11-26 18:30:41] -rwx------. 1 boincer umatlas     36292 Nov 18 02:02 runpilot2-wrapper.sh
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:03 queuedata.json
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:30:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:06 run_atlas
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:06 job.xml
[2025-11-26 18:30:41] -rw-r--r--. 3 boincer umatlas 409068688 Nov 26 00:06 EVNT.47483658._000292.pool.root.1
[2025-11-26 18:30:41] -rw-r--r--. 3 boincer umatlas 409068688 Nov 26 00:06 ATLAS.root_0
[2025-11-26 18:30:41] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:06 input.tar.gz
[2025-11-26 18:30:41] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:06 start_atlas.sh
[2025-11-26 18:30:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:06 shared
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:06 boinc_lockfile
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:21 pandaJob.out
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas    991877 Nov 26 00:21 agis_schedconf.cvmfs.json
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:16 boinc_task_state.xml
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas      7176 Nov 26 18:27 init_data.xml
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas 924764758 Nov 26 18:28 HITS.47483661._002615.pool.root.1
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas      1076 Nov 26 18:28 memory_monitor_summary.json
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas   2150131 Nov 26 18:29 log.47483661._002615.job.log.tgz.1
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas      8636 Nov 26 18:29 heartbeat.json
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas        95 Nov 26 18:30 pilot_heartbeat.json
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:30 wrapper_checkpoint.txt
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas      4826 Nov 26 18:30 pilotlog.txt
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas   8006159 Nov 26 18:30 log.47483661._002615.job.log.1
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas       353 Nov 26 18:30 output.list
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:30 boinc_mmap_file
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:30 runtime_log
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas  10178560 Nov 26 18:30 result.tar.gz
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas      8803 Nov 26 18:30 runtime_log.err
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas       791 Nov 26 18:30 9GSMDmbuUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwTKODmtjRkKm.diag
[2025-11-26 18:30:41] -rw-r--r--. 1 boincer umatlas     23634 Nov 26 18:30 stderr.txt
[2025-11-26 18:30:41] HITS file was successfully produced:
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas 924764758 Nov 26 18:28 shared/HITS.pool.root.1
[2025-11-26 18:30:41]  *** Contents of shared directory: ***
[2025-11-26 18:30:41] total 1313120
[2025-11-26 18:30:41] -rw-r--r--. 3 boincer umatlas 409068688 Nov 26 00:06 ATLAS.root_0
[2025-11-26 18:30:41] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:06 input.tar.gz
[2025-11-26 18:30:41] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:06 start_atlas.sh
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas 924764758 Nov 26 18:28 HITS.pool.root.1
[2025-11-26 18:30:41] -rw-------. 1 boincer umatlas  10178560 Nov 26 18:30 result.tar.gz
18:31:03 (3448902): run_atlas exited; CPU time 145084.304758
18:31:03 (3448902): called boinc_finish(0)

</stderr_txt>
]]>

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