Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:38 (3812296): wrapper (7.7.26015): starting
00:10:38 (3812296): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:10:38] Arguments: --nthreads 9
[2025-11-26 00:10:38] Threads: 9
[2025-11-26 00:10:38] Checking for CVMFS
[2025-11-26 00:10:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:40] 2.13.3.0 12161 29612 324132 153310 2 234 33522231 40960001 17587 16776704 0 77038543 99.543 91492799 38111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:10:40] CVMFS is ok
[2025-11-26 00:10:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:40] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:40] Checking for apptainer binary...
[2025-11-26 00:10:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:40] Running /usr/bin/apptainer --version
[2025-11-26 00:10:40] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:40] c6-5-7-1.aglt2.org
[2025-11-26 00:10:40] apptainer works
[2025-11-26 00:10:40] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:40] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:40] Starting ATLAS job with PandaID=6894239158
[2025-11-26 00:10:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:44:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:44:54] 2025-11-26 17:44:20,226 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 12:44:54] 2025-11-26 17:44:20,251 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3011.939357142856
[2025-11-26 12:44:54] 2025-11-26 17:44:20,294 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894239158/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,294 | INFO     | extracted standard info from prmon json
[2025-11-26 12:44:54] 2025-11-26 17:44:20,294 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:44:54] 2025-11-26 17:44:20,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:44:54] 2025-11-26 17:44:20,297 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 12:44:54] 2025-11-26 17:44:20,297 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 12:44:54] 2025-11-26 17:44:20,312 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:44:54] 2025-11-26 17:44:20,316 | INFO     | sum of square deviations: 125134294484.28152
[2025-11-26 12:44:54] 2025-11-26 17:44:20,323 | INFO     | time since job start (45182s) is within the limit (172800.0s)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,331 | INFO     | sum of deviations: 263732320120.24506
[2025-11-26 12:44:54] 2025-11-26 17:44:20,349 | INFO     | mean x: 1764156486.879567
[2025-11-26 12:44:54] 2025-11-26 17:44:20,350 | INFO     | mean y: 2619065.890392422
[2025-11-26 12:44:54] 2025-11-26 17:44:20,350 | INFO     | intersect: -3715507010.2379394
[2025-11-26 12:44:54] 2025-11-26 17:44:20,351 | INFO     | chi2: 2.5338530162329365
[2025-11-26 12:44:54] 2025-11-26 17:44:20,351 | INFO     | sum of square deviations: 122611496587.88687
[2025-11-26 12:44:54] 2025-11-26 17:44:20,366 | INFO     | sum of deviations: 307275408809.59644
[2025-11-26 12:44:54] 2025-11-26 17:44:20,366 | INFO     | mean x: 1764156334.3855586
[2025-11-26 12:44:54] 2025-11-26 17:44:20,367 | INFO     | mean y: 2621681.4713896457
[2025-11-26 12:44:54] 2025-11-26 17:44:20,367 | INFO     | intersect: -4418512338.89188
[2025-11-26 12:44:54] 2025-11-26 17:44:20,367 | INFO     | chi2: 1.8453608500183007
[2025-11-26 12:44:54] 2025-11-26 17:44:20,368 | INFO     | current chi2=1.8453608500183007 (change=27.1717483928177 %)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,368 | INFO     | sum of square deviations: 120122838866.43909
[2025-11-26 12:44:54] 2025-11-26 17:44:20,377 | INFO     | sum of deviations: 300554891073.55865
[2025-11-26 12:44:54] 2025-11-26 17:44:20,378 | INFO     | mean x: 1764156181.8916323
[2025-11-26 12:44:54] 2025-11-26 17:44:20,378 | INFO     | mean y: 2621269.6652949248
[2025-11-26 12:44:54] 2025-11-26 17:44:20,378 | INFO     | intersect: -4411408352.750859
[2025-11-26 12:44:54] 2025-11-26 17:44:20,379 | INFO     | chi2: 1.8452678066451746
[2025-11-26 12:44:54] 2025-11-26 17:44:20,379 | INFO     | current chi2=1.8452678066451746 (change=0.005042015122688754 %)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,379 | INFO     | right removable region: 728
[2025-11-26 12:44:54] 2025-11-26 17:44:20,380 | INFO     | sum of square deviations: 122611100087.88695
[2025-11-26 12:44:54] 2025-11-26 17:44:20,389 | INFO     | sum of deviations: 128923344148.3801
[2025-11-26 12:44:54] 2025-11-26 17:44:20,390 | INFO     | mean x: 1764156639.3855586
[2025-11-26 12:44:54] 2025-11-26 17:44:20,390 | INFO     | mean y: 2627193.4509536787
[2025-11-26 12:44:54] 2025-11-26 17:44:20,390 | INFO     | intersect: -1852351461.728925
[2025-11-26 12:44:54] 2025-11-26 17:44:20,391 | INFO     | chi2: 0.9791815846209272
[2025-11-26 12:44:54] 2025-11-26 17:44:20,391 | INFO     | current chi2=0.9791815846209272 (change=61.35602269161332 %)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,391 | INFO     | sum of square deviations: 120122045866.43912
[2025-11-26 12:44:54] 2025-11-26 17:44:20,405 | INFO     | sum of deviations: 89021619079.89998
[2025-11-26 12:44:54] 2025-11-26 17:44:20,406 | INFO     | mean x: 1764156791.8916323
[2025-11-26 12:44:54] 2025-11-26 17:44:20,406 | INFO     | mean y: 2629638.327846365
[2025-11-26 12:44:54] 2025-11-26 17:44:20,406 | INFO     | intersect: -1304774783.50171
[2025-11-26 12:44:54] 2025-11-26 17:44:20,407 | INFO     | chi2: 0.8963061145440827
[2025-11-26 12:44:54] 2025-11-26 17:44:20,407 | INFO     | current chi2=0.8963061145440827 (change=8.463748846842156 %)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,423 | INFO     | left removable region: 20
[2025-11-26 12:44:54] 2025-11-26 17:44:20,424 | INFO     | sum of square deviations: 110036933278.2755
[2025-11-26 12:44:54] 2025-11-26 17:44:20,457 | INFO     | sum of deviations: 70315792137.05511
[2025-11-26 12:44:54] 2025-11-26 17:44:20,458 | INFO     | mean x: 1764156761.4025424
[2025-11-26 12:44:54] 2025-11-26 17:44:20,458 | INFO     | mean y: 2635566.4138418077
[2025-11-26 12:44:54] 2025-11-26 17:44:20,458 | INFO     | intersect: -1124695743.5041912
[2025-11-26 12:44:54] 2025-11-26 17:44:20,459 | INFO     | chi2: 0.08067719939910752
[2025-11-26 12:44:54] 2025-11-26 17:44:20,459 | INFO     | current memory leak: 0.64 B/s (using 708 data points, chi2=0.08)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,472 | INFO     | could have reported an average CPU frequency of 2993 MHz (28 samples)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,472 | INFO     | ..............................
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . Timing measurements:
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . get job = 0 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . initial setup = 3 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . payload setup = 25 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . stage-in = 0 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . payload execution = 45080 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . stage-out = 3 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | . log creation = 0 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,473 | INFO     | ..............................
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | 
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | job summary report
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | --------------------------------------------------
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | PanDA job id: 6894239158
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | task id: 47523939
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | errors: (none)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | pilot state: finished 
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | transexitcode: 0
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | exeerrorcode: 0
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | exeerrordiag: 
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | exitcode: 0
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | exitmsg: OK
[2025-11-26 12:44:54] 2025-11-26 17:44:20,830 | INFO     | cpuconsumptiontime: 112328 s
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | nevents: 400
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | neventsw: 0
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | pid: 3848653
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | pgrp: 3848653
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | corecount: 9
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | event service: False
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | sizes: {0: 2283775, 1: 2283974, 12: 2283974, 23: 2284002, 25: 2284292, 33: 2284320, 45109: 2329365, 45110: 2329364, 45114: 2338418, 45117: 2338474, 45128: 2338668}
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | --------------------------------------------------
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | 
[2025-11-26 12:44:54] 2025-11-26 17:44:20,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 12:44:54] 2025-11-26 17:44:20,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | job 6894239158 has completed (purged errors)
[2025-11-26 12:44:54] 2025-11-26 17:44:20,894 | INFO     | overall cleanup function is called
[2025-11-26 12:44:54] 2025-11-26 17:44:21,903 | INFO     | --- collectZombieJob: --- 10, [3848653]
[2025-11-26 12:44:54] 2025-11-26 17:44:21,903 | INFO     | zombie collector waiting for pid 3848653
[2025-11-26 12:44:54] 2025-11-26 17:44:21,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:44:54] 2025-11-26 17:44:21,947 | INFO     | collected zombie processes
[2025-11-26 12:44:54] 2025-11-26 17:44:21,947 | INFO     | will attempt to kill all subprocesses of pid=3848653
[2025-11-26 12:44:54] 2025-11-26 17:44:22,886 | INFO     | process IDs to be killed: [3848653] (in reverse order)
[2025-11-26 12:44:54] 2025-11-26 17:44:23,014 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:44:54] 2025-11-26 17:44:23,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:44:54] 2025-11-26 17:44:23,030 | INFO     | did not find any defunct processes belonging to 3848653
[2025-11-26 12:44:54] 2025-11-26 17:44:23,043 | INFO     | did not find any defunct processes belonging to 3848653
[2025-11-26 12:44:54] 2025-11-26 17:44:23,045 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:44:54] 2025-11-26 17:44:23,045 | INFO     | ready for new job
[2025-11-26 12:44:54] 2025-11-26 17:44:23,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:44:54] 2025-11-26 17:44:23,050 | INFO     | ***************************************
[2025-11-26 12:44:54] 2025-11-26 17:44:23,050 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:44:54] 2025-11-26 17:44:23,054 | INFO     | ***************************************
[2025-11-26 12:44:54] 2025-11-26 17:44:23,054 | INFO     | 
[2025-11-26 12:44:54] 2025-11-26 17:44:23,057 | INFO     | architecture information:
[2025-11-26 12:44:54] 2025-11-26 17:44:23,061 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:44:54] 2025-11-26 17:44:23,100 | INFO     | cat /etc/os-release:
[2025-11-26 12:44:54] NAME="CentOS Linux"
[2025-11-26 12:44:54] VERSION="7 (Core)"
[2025-11-26 12:44:54] ID="centos"
[2025-11-26 12:44:54] ID_LIKE="rhel fedora"
[2025-11-26 12:44:54] VERSION_ID="7"
[2025-11-26 12:44:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:44:54] ANSI_COLOR="0;31"
[2025-11-26 12:44:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:44:54] HOME_URL="https://www.centos.org/"
[2025-11-26 12:44:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:44:54] 
[2025-11-26 12:44:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:44:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:44:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:44:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:44:54] 
[2025-11-26 12:44:54] 2025-11-26 17:44:23,101 | INFO     | ***************************************
[2025-11-26 12:44:54] 2025-11-26 17:44:23,606 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 12:44:54] 2025-11-26 17:44:23,642 | INFO     | sufficient remaining disk space (70570213376 B)
[2025-11-26 12:44:54] 2025-11-26 17:44:23,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:44:54] 2025-11-26 17:44:23,643 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:44:54] 2025-11-26 17:44:23,643 | INFO     | update_server=False
[2025-11-26 12:44:54] 2025-11-26 17:44:23,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:44:54] 2025-11-26 17:44:23,647 | INFO     | all payload control threads have been joined
[2025-11-26 12:44:54] 2025-11-26 17:44:24,127 | INFO     | all data control threads have been joined
[2025-11-26 12:44:54] 2025-11-26 17:44:24,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:44:54] 2025-11-26 17:44:24,225 | INFO     | aborting loop
[2025-11-26 12:44:54] 2025-11-26 17:44:24,429 | INFO     | all job control threads have been joined
[2025-11-26 12:44:54] 2025-11-26 17:44:24,648 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:24,653 | INFO     | [payload] control thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:24,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:44:54] 2025-11-26 17:44:24,824 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,133 | INFO     | [data] control thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:44:54] 2025-11-26 17:44:25,181 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,231 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,435 | INFO     | [job] control thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,440 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,649 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,668 | INFO     | [job] validate thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,696 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:25,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:44:54] 2025-11-26 17:44:26,110 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:26,740 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:26,860 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:29,182 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:44:54] 2025-11-26 17:44:41,430 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:44:54] 2025-11-26 17:44:43,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284490082112)>', '<ExcThread(monitor, started 140284117620480)>']
[2025-11-26 12:44:54] 2025-11-26 17:44:48,169 | INFO     | all workflow threads have been joined
[2025-11-26 12:44:54] 2025-11-26 17:44:48,169 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:44:54] 2025-11-26 17:44:48,170 | INFO     | traces error code: 0
[2025-11-26 12:44:54] 2025-11-26 17:44:48,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:44:54] 2025-11-26 17:44:53,904 | INFO     | PID=3822323 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 12:44:54] 2025-11-26 17:44:53,905 | INFO     | .. there are 24 such processes running
[2025-11-26 12:44:54] 2025-11-26 17:44:53,905 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:44:54] 2025-11-26 17:44:53,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:44:54] 2025-11-26 17:44:53,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:44:54] 2025-11-26 17:44:53,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:44:54] 2025-11-26 17:44:53,905 | INFO     | [monitor] control thread has ended
[2025-11-26 12:44:54] 2025-11-26 17:44:54,376 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:44:54] 2025-11-26 17:44:54,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:44:54] 2025-11-26 17:44:54,444 [wrapper] pilotpid: 3822323
[2025-11-26 12:44:54] 2025-11-26 17:44:54,459 [wrapper] Pilot exit status: 0
[2025-11-26 12:44:54] 2025-11-26 17:44:54,480 [wrapper] pandaids: 6894239158
[2025-11-26 12:44:54] 2025-11-26 17:44:54,563 [wrapper] cleanup supervisor_pilot 1829531 3822324
[2025-11-26 12:44:54] 2025-11-26 17:44:54,568 [wrapper] Test setup, not cleaning
[2025-11-26 12:44:54] 2025-11-26 17:44:54,572 [wrapper] apfmon messages muted
[2025-11-26 12:44:54] 2025-11-26 17:44:54,576 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:44:54] 2025-11-26 17:44:54,580 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:44:54]  *** Error codes and diagnostics ***
[2025-11-26 12:44:54]     "exeErrorCode": 0,
[2025-11-26 12:44:54]     "exeErrorDiag": "",
[2025-11-26 12:44:54]     "pilotErrorCode": 0,
[2025-11-26 12:44:54]     "pilotErrorDiag": "",
[2025-11-26 12:44:54]  *** Listing of results directory ***
[2025-11-26 12:44:54] total 640032
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:12 queuedata.json
[2025-11-26 12:44:54] -rwx------. 1 boincer umatlas     36292 Nov 25 02:14 runpilot2-wrapper.sh
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:44:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-26 12:44:54] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 00:10 EVNT.47523935._000002.pool.root.1
[2025-11-26 12:44:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-26 12:44:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-26 12:44:54] -rw-r--r--. 2 boincer umatlas    589951 Nov 26 00:10 input.tar.gz
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas      2609 Nov 26 00:10 pandaJob.out
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas        57 Nov 26 00:10 setup.sh.local
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-26 12:44:54] drwx------. 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas      6840 Nov 26 12:38 init_data.xml
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas 341270384 Nov 26 12:42 HITS.47523939._000032.pool.root.1
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas       531 Nov 26 12:42 boinc_task_state.xml
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas      1045 Nov 26 12:43 memory_monitor_summary.json
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas    864584 Nov 26 12:44 log.47523939._000032.job.log.tgz.1
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas        95 Nov 26 12:44 pilot_heartbeat.json
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas      7818 Nov 26 12:44 heartbeat.json
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas        28 Nov 26 12:44 wrapper_checkpoint.txt
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:44 boinc_mmap_file
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas       823 Nov 26 12:44 pilotlog.txt
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas   5607678 Nov 26 12:44 log.47523939._000032.job.log.1
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas       357 Nov 26 12:44 output.list
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:44 runtime_log
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas   6492160 Nov 26 12:44 result.tar.gz
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 12:44 runtime_log.err
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas       660 Nov 26 12:44 9LwMDm8Q2h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3NJKDmlg4iJo.diag
[2025-11-26 12:44:54] -rw-r--r--. 1 boincer umatlas     21335 Nov 26 12:44 stderr.txt
[2025-11-26 12:44:54] HITS file was successfully produced:
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas 341270384 Nov 26 12:42 shared/HITS.pool.root.1
[2025-11-26 12:44:54]  *** Contents of shared directory: ***
[2025-11-26 12:44:54] total 630512
[2025-11-26 12:44:54] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 00:10 ATLAS.root_0
[2025-11-26 12:44:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-26 12:44:54] -rw-r--r--. 2 boincer umatlas    589951 Nov 26 00:10 input.tar.gz
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas 341270384 Nov 26 12:42 HITS.pool.root.1
[2025-11-26 12:44:54] -rw-------. 1 boincer umatlas   6492160 Nov 26 12:44 result.tar.gz
12:44:56 (3812296): run_atlas exited; CPU time 113856.393112
12:44:56 (3812296): called boinc_finish(0)

</stderr_txt>
]]>

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