Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:56:57 (3642784): wrapper (7.7.26015): starting
11:56:57 (3642784): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 11:56:57] Arguments: --nthreads 9
[2025-11-26 11:56:57] Threads: 9
[2025-11-26 11:56:57] Checking for CVMFS
[2025-11-26 11:56:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:56:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:56:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:56:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:56:59] 2.13.3.0 42195 30178 339032 153328 2 373 29054076 32935936 27468 16776704 0 176064310 99.783 102825692 33251 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:56:59] CVMFS is ok
[2025-11-26 11:56:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:56:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:56:59] Further information can be found at the LHC@home message board.
[2025-11-26 11:56:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:56:59] Checking for apptainer binary...
[2025-11-26 11:56:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:56:59] Running /usr/bin/apptainer --version
[2025-11-26 11:56:59] apptainer version 1.4.4-1.el9
[2025-11-26 11:56:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:56:59] c-6-3.aglt2.org
[2025-11-26 11:56:59] apptainer works
[2025-11-26 11:56:59] Set ATHENA_PROC_NUMBER=9
[2025-11-26 11:56:59] Set ATHENA_CORE_NUMBER=9
[2025-11-26 11:56:59] Starting ATLAS job with PandaID=6894239157
[2025-11-26 11:56:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:54:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:54:45] 2025-11-27 00:54:08,897 | INFO     | extracted standard info from prmon json
[2025-11-26 19:54:45] 2025-11-27 00:54:08,897 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:54:45] 2025-11-27 00:54:08,898 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:54:45] 2025-11-27 00:54:08,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 19:54:45] 2025-11-27 00:54:08,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 19:54:45] 2025-11-27 00:54:08,908 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:54:45] 2025-11-27 00:54:08,910 | INFO     | sum of square deviations: 31784385345.324833
[2025-11-26 19:54:45] 2025-11-27 00:54:08,917 | INFO     | sum of deviations: 94900270466.66667
[2025-11-26 19:54:45] 2025-11-27 00:54:08,917 | INFO     | mean x: 1764190539.559829
[2025-11-26 19:54:45] 2025-11-27 00:54:08,917 | INFO     | mean y: 2633938.3333333335
[2025-11-26 19:54:45] 2025-11-27 00:54:08,917 | INFO     | intersect: -5264800292.028102
[2025-11-26 19:54:45] 2025-11-27 00:54:08,918 | INFO     | chi2: 2.3385287354325195
[2025-11-26 19:54:45] 2025-11-27 00:54:08,919 | INFO     | sum of square deviations: 30776505220.306637
[2025-11-26 19:54:45] 2025-11-27 00:54:08,927 | INFO     | sum of deviations: 124127860541.91792
[2025-11-26 19:54:45] 2025-11-27 00:54:08,929 | INFO     | mean x: 1764190387.060475
[2025-11-26 19:54:45] 2025-11-27 00:54:08,929 | INFO     | mean y: 2638319.645788337
[2025-11-26 19:54:45] 2025-11-27 00:54:08,929 | INFO     | intersect: -7112697770.88428
[2025-11-26 19:54:45] 2025-11-27 00:54:08,930 | INFO     | chi2: 1.6474225375998375
[2025-11-26 19:54:45] 2025-11-27 00:54:08,930 | INFO     | current chi2=1.6474225375998375 (change=29.553034237351778 %)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,931 | INFO     | sum of square deviations: 29790160382.788277
[2025-11-26 19:54:45] 2025-11-27 00:54:08,950 | INFO     | time since job start (28605s) is within the limit (172800.0s)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,957 | INFO     | sum of deviations: 121597323493.06766
[2025-11-26 19:54:45] 2025-11-27 00:54:08,958 | INFO     | mean x: 1764190234.5611353
[2025-11-26 19:54:45] 2025-11-27 00:54:08,958 | INFO     | mean y: 2637928.408296943
[2025-11-26 19:54:45] 2025-11-27 00:54:08,958 | INFO     | intersect: -7198424700.955189
[2025-11-26 19:54:45] 2025-11-27 00:54:08,959 | INFO     | chi2: 1.647638043601354
[2025-11-26 19:54:45] 2025-11-27 00:54:08,959 | INFO     | current chi2=1.647638043601354 (change=-0.013081404229816842 %)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,959 | INFO     | right removable region: 457
[2025-11-26 19:54:45] 2025-11-27 00:54:08,960 | INFO     | sum of square deviations: 30776488140.306644
[2025-11-26 19:54:45] 2025-11-27 00:54:08,969 | INFO     | sum of deviations: 8130066518.406052
[2025-11-26 19:54:45] 2025-11-27 00:54:08,969 | INFO     | mean x: 1764190692.060475
[2025-11-26 19:54:45] 2025-11-27 00:54:08,970 | INFO     | mean y: 2647013.699784017
[2025-11-26 19:54:45] 2025-11-27 00:54:08,970 | INFO     | intersect: -463390164.16847557
[2025-11-26 19:54:45] 2025-11-27 00:54:08,970 | INFO     | chi2: 0.7507342457576284
[2025-11-26 19:54:45] 2025-11-27 00:54:08,970 | INFO     | current chi2=0.7507342457576284 (change=67.89715540447368 %)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,971 | INFO     | sum of square deviations: 29790126222.788277
[2025-11-26 19:54:45] 2025-11-27 00:54:08,977 | INFO     | sum of deviations: 3561637289.829685
[2025-11-26 19:54:45] 2025-11-27 00:54:08,977 | INFO     | mean x: 1764190844.5611353
[2025-11-26 19:54:45] 2025-11-27 00:54:08,977 | INFO     | mean y: 2647718.327510917
[2025-11-26 19:54:45] 2025-11-27 00:54:08,977 | INFO     | intersect: -208274781.67715523
[2025-11-26 19:54:45] 2025-11-27 00:54:08,978 | INFO     | chi2: 0.7476952695565795
[2025-11-26 19:54:45] 2025-11-27 00:54:08,978 | INFO     | current chi2=0.7476952695565795 (change=0.4048005293780074 %)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,978 | INFO     | left removable region: 20
[2025-11-26 19:54:45] 2025-11-27 00:54:08,979 | INFO     | sum of square deviations: 25877360614.20592
[2025-11-26 19:54:45] 2025-11-27 00:54:08,985 | INFO     | sum of deviations: 25967315420.016006
[2025-11-26 19:54:45] 2025-11-27 00:54:08,985 | INFO     | mean x: 1764190814.0640733
[2025-11-26 19:54:45] 2025-11-27 00:54:08,985 | INFO     | mean y: 2652984.2494279174
[2025-11-26 19:54:45] 2025-11-27 00:54:08,985 | INFO     | intersect: -1767670504.7986598
[2025-11-26 19:54:45] 2025-11-27 00:54:08,986 | INFO     | chi2: 0.007518014518884685
[2025-11-26 19:54:45] 2025-11-27 00:54:08,986 | INFO     | current memory leak: 1.00 B/s (using 437 data points, chi2=0.01)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | ..............................
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | . Timing measurements:
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | . get job = 0 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | . initial setup = 3 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | . payload setup = 18 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,987 | INFO     | . stage-in = 0 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,988 | INFO     | . payload execution = 28540 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,988 | INFO     | . stage-out = 3 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,988 | INFO     | . log creation = 0 s
[2025-11-26 19:54:45] 2025-11-27 00:54:08,988 | INFO     | ..............................
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | 
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | job summary report
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | --------------------------------------------------
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | PanDA job id: 6894239157
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | task id: 47523939
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | errors: (none)
[2025-11-26 19:54:45] 2025-11-27 00:54:09,270 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | pilot state: finished 
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | transexitcode: 0
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | exeerrorcode: 0
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | exeerrordiag: 
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | exitcode: 0
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | exitmsg: OK
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | cpuconsumptiontime: 139136 s
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | nevents: 400
[2025-11-26 19:54:45] 2025-11-27 00:54:09,271 | INFO     | neventsw: 0
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | pid: 3653985
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | pgrp: 3653985
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | corecount: 9
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | event service: False
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | sizes: {0: 2283946, 1: 2283974, 8: 2284236, 12: 2284264, 28562: 2322459, 28567: 2331641, 28582: 2331779}
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | --------------------------------------------------
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | 
[2025-11-26 19:54:45] 2025-11-27 00:54:09,272 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 19:54:45] 2025-11-27 00:54:09,302 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,302 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,302 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:54:45] 2025-11-27 00:54:09,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,305 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:54:45] 2025-11-27 00:54:09,305 | INFO     | job 6894239157 has completed (purged errors)
[2025-11-26 19:54:45] 2025-11-27 00:54:09,305 | INFO     | overall cleanup function is called
[2025-11-26 19:54:45] 2025-11-27 00:54:10,315 | INFO     | --- collectZombieJob: --- 10, [3653985]
[2025-11-26 19:54:45] 2025-11-27 00:54:10,318 | INFO     | zombie collector waiting for pid 3653985
[2025-11-26 19:54:45] 2025-11-27 00:54:10,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:54:45] 2025-11-27 00:54:10,319 | INFO     | collected zombie processes
[2025-11-26 19:54:45] 2025-11-27 00:54:10,319 | INFO     | will attempt to kill all subprocesses of pid=3653985
[2025-11-26 19:54:45] 2025-11-27 00:54:10,929 | INFO     | PID=3646969 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 19:54:45] 2025-11-27 00:54:10,929 | INFO     | .. there are 41 such processes running
[2025-11-26 19:54:45] 2025-11-27 00:54:11,324 | INFO     | process IDs to be killed: [3653985] (in reverse order)
[2025-11-26 19:54:45] 2025-11-27 00:54:11,487 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:54:45] 2025-11-27 00:54:11,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:54:45] 2025-11-27 00:54:11,526 | INFO     | did not find any defunct processes belonging to 3653985
[2025-11-26 19:54:45] 2025-11-27 00:54:11,564 | INFO     | did not find any defunct processes belonging to 3653985
[2025-11-26 19:54:45] 2025-11-27 00:54:11,570 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:54:45] 2025-11-27 00:54:11,570 | INFO     | ready for new job
[2025-11-26 19:54:45] 2025-11-27 00:54:11,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:54:45] 2025-11-27 00:54:11,574 | INFO     | ***************************************
[2025-11-26 19:54:45] 2025-11-27 00:54:11,574 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:54:45] 2025-11-27 00:54:11,574 | INFO     | ***************************************
[2025-11-26 19:54:45] 2025-11-27 00:54:11,574 | INFO     | 
[2025-11-26 19:54:45] 2025-11-27 00:54:11,649 | INFO     | architecture information:
[2025-11-26 19:54:45] 2025-11-27 00:54:11,658 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:54:45] 2025-11-27 00:54:11,897 | INFO     | cat /etc/os-release:
[2025-11-26 19:54:45] NAME="CentOS Linux"
[2025-11-26 19:54:45] VERSION="7 (Core)"
[2025-11-26 19:54:45] ID="centos"
[2025-11-26 19:54:45] ID_LIKE="rhel fedora"
[2025-11-26 19:54:45] VERSION_ID="7"
[2025-11-26 19:54:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:54:45] ANSI_COLOR="0;31"
[2025-11-26 19:54:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:54:45] HOME_URL="https://www.centos.org/"
[2025-11-26 19:54:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:54:45] 
[2025-11-26 19:54:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:54:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:54:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:54:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:54:45] 
[2025-11-26 19:54:45] 2025-11-27 00:54:11,897 | INFO     | ***************************************
[2025-11-26 19:54:45] 2025-11-27 00:54:12,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 19:54:45] 2025-11-27 00:54:12,419 | INFO     | sufficient remaining disk space (73003958272 B)
[2025-11-26 19:54:45] 2025-11-27 00:54:12,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:54:45] 2025-11-27 00:54:12,420 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:54:45] 2025-11-27 00:54:12,420 | INFO     | update_server=False
[2025-11-26 19:54:45] 2025-11-27 00:54:12,420 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:54:45] 2025-11-27 00:54:12,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:54:45] 2025-11-27 00:54:12,421 | INFO     | aborting loop
[2025-11-26 19:54:45] 2025-11-27 00:54:12,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:54:45] 2025-11-27 00:54:12,675 | INFO     | all data control threads have been joined
[2025-11-26 19:54:45] 2025-11-27 00:54:13,288 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:54:45] 2025-11-27 00:54:13,426 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:13,444 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:13,514 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:13,681 | INFO     | [data] control thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:13,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:54:45] 2025-11-27 00:54:13,920 | INFO     | all payload control threads have been joined
[2025-11-26 19:54:45] 2025-11-27 00:54:13,927 | INFO     | all job control threads have been joined
[2025-11-26 19:54:45] 2025-11-27 00:54:13,946 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:54:45] 2025-11-27 00:54:14,429 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,491 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,563 | INFO     | [job] validate thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,785 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,866 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,926 | INFO     | [payload] control thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:14,934 | INFO     | [job] control thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:15,277 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:17,774 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:54:45] 2025-11-27 00:54:19,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139676241192768)>', '<ExcThread(monitor, started 139675591227136)>']
[2025-11-26 19:54:45] 2025-11-27 00:54:24,056 | INFO     | all workflow threads have been joined
[2025-11-26 19:54:45] 2025-11-27 00:54:24,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:54:45] 2025-11-27 00:54:24,056 | INFO     | traces error code: 0
[2025-11-26 19:54:45] 2025-11-27 00:54:24,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:54:45] 2025-11-27 00:54:43,896 | INFO     | PID=3646969 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:54:45] 2025-11-27 00:54:43,945 | INFO     | .. there are 41 such processes running
[2025-11-26 19:54:45] 2025-11-27 00:54:43,945 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:54:45] 2025-11-27 00:54:43,945 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:54:45] 2025-11-27 00:54:43,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:54:45] 2025-11-27 00:54:43,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:54:45] 2025-11-27 00:54:43,946 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 19:54:45] 2025-11-27 00:54:43,946 | INFO     | [monitor] control thread has ended
[2025-11-26 19:54:45] 2025-11-27 00:54:44,172 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:54:45] 2025-11-27 00:54:44,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:54:45] 2025-11-27 00:54:44,310 [wrapper] pilotpid: 3646969
[2025-11-26 19:54:45] 2025-11-27 00:54:44,330 [wrapper] Pilot exit status: 0
[2025-11-26 19:54:45] 2025-11-27 00:54:44,419 [wrapper] pandaids: 6894239157
[2025-11-26 19:54:45] 2025-11-27 00:54:44,783 [wrapper] cleanup supervisor_pilot 1180068 3646970
[2025-11-26 19:54:45] 2025-11-27 00:54:44,788 [wrapper] Test setup, not cleaning
[2025-11-26 19:54:45] 2025-11-27 00:54:44,810 [wrapper] apfmon messages muted
[2025-11-26 19:54:45] 2025-11-27 00:54:44,834 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:54:45] 2025-11-27 00:54:44,854 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:54:45]  *** Error codes and diagnostics ***
[2025-11-26 19:54:45]     "exeErrorCode": 0,
[2025-11-26 19:54:45]     "exeErrorDiag": "",
[2025-11-26 19:54:45]     "pilotErrorCode": 0,
[2025-11-26 19:54:45]     "pilotErrorDiag": "",
[2025-11-26 19:54:45]  *** Listing of results directory ***
[2025-11-26 19:54:45] total 628604
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:12 queuedata.json
[2025-11-26 19:54:45] -rwx------. 1 boincer umatlas     36292 Nov 25 02:14 runpilot2-wrapper.sh
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:54:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:56 run_atlas
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:56 job.xml
[2025-11-26 19:54:45] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 11:56 EVNT.47523935._000002.pool.root.1
[2025-11-26 19:54:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:56 start_atlas.sh
[2025-11-26 19:54:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:56 shared
[2025-11-26 19:54:45] -rw-r--r--. 2 boincer umatlas    589949 Nov 26 11:56 input.tar.gz
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:56 boinc_lockfile
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas      2609 Nov 26 11:56 pandaJob.out
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas        57 Nov 26 11:56 setup.sh.local
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas    991545 Nov 26 11:57 agis_schedconf.cvmfs.json
[2025-11-26 19:54:45] drwx------. 5 boincer umatlas      4096 Nov 26 11:57 pilot3
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas      6658 Nov 26 19:49 init_data.xml
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas 333556247 Nov 26 19:52 HITS.47523939._000031.pool.root.1
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas       532 Nov 26 19:52 boinc_task_state.xml
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas      1055 Nov 26 19:53 memory_monitor_summary.json
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas    668140 Nov 26 19:53 log.47523939._000031.job.log.tgz.1
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas        95 Nov 26 19:54 pilot_heartbeat.json
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas      7833 Nov 26 19:54 heartbeat.json
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:54 boinc_mmap_file
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:54 wrapper_checkpoint.txt
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas       893 Nov 26 19:54 pilotlog.txt
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas   3812705 Nov 26 19:54 log.47523939._000031.job.log.1
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas       357 Nov 26 19:54 output.list
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:54 runtime_log
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas   4495360 Nov 26 19:54 result.tar.gz
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas       660 Nov 26 19:54 UTuMDm8Q2h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2NJKDmCs7iEn.diag
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 19:54 runtime_log.err
[2025-11-26 19:54:45] -rw-r--r--. 1 boincer umatlas     21294 Nov 26 19:54 stderr.txt
[2025-11-26 19:54:45] HITS file was successfully produced:
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas 333556247 Nov 26 19:52 shared/HITS.pool.root.1
[2025-11-26 19:54:45]  *** Contents of shared directory: ***
[2025-11-26 19:54:45] total 621032
[2025-11-26 19:54:45] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 11:56 ATLAS.root_0
[2025-11-26 19:54:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:56 start_atlas.sh
[2025-11-26 19:54:45] -rw-r--r--. 2 boincer umatlas    589949 Nov 26 11:56 input.tar.gz
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas 333556247 Nov 26 19:52 HITS.pool.root.1
[2025-11-26 19:54:45] -rw-------. 1 boincer umatlas   4495360 Nov 26 19:54 result.tar.gz
19:54:46 (3642784): run_atlas exited; CPU time 140567.311683
19:54:46 (3642784): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN