Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:27 (1850524): wrapper (7.7.26015): starting
00:05:27 (1850524): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:05:27] Arguments: --nthreads 9
[2025-11-26 00:05:27] Threads: 9
[2025-11-26 00:05:27] Checking for CVMFS
[2025-11-26 00:05:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:30] 2.13.3.0 44796 29466 376700 153309 3 764 23800292 32947201 30528 16776704 0 116072945 99.462 160957725 35588 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:05:30] CVMFS is ok
[2025-11-26 00:05:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:30] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:30] Checking for apptainer binary...
[2025-11-26 00:05:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:30] Running /usr/bin/apptainer --version
[2025-11-26 00:05:30] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:31] c6-6-8-2.aglt2.org
[2025-11-26 00:05:31] apptainer works
[2025-11-26 00:05:31] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:05:31] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:05:31] Starting ATLAS job with PandaID=6891106091
[2025-11-26 00:05:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:43:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:43:54] 2025-11-27 07:42:48,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:43:54] 2025-11-27 07:42:48,311 | INFO     | time since job start (95759s) is within the limit (172800.0s)
[2025-11-27 02:43:54] 2025-11-27 07:42:50,325 | INFO     | time since job start (95761s) is within the limit (172800.0s)
[2025-11-27 02:43:54] 2025-11-27 07:42:50,611 | INFO     | monitor loop #5035: job 0:6891106091 is in state 'finished'
[2025-11-27 02:43:54] 2025-11-27 07:42:50,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:43:54] 2025-11-27 07:42:52,355 | INFO     | time since job start (95763s) is within the limit (172800.0s)
[2025-11-27 02:43:54] 2025-11-27 07:42:53,134 | INFO     | monitor loop #5036: job 0:6891106091 is in state 'finished'
[2025-11-27 02:43:54] 2025-11-27 07:42:53,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:43:54] 2025-11-27 07:42:54,362 | INFO     | time since job start (95765s) is within the limit (172800.0s)
[2025-11-27 02:43:54] 2025-11-27 07:42:55,687 | INFO     | monitor loop #5037: job 0:6891106091 is in state 'finished'
[2025-11-27 02:43:54] 2025-11-27 07:42:55,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:43:54] 2025-11-27 07:42:56,369 | INFO     | time since job start (95767s) is within the limit (172800.0s)
[2025-11-27 02:43:54] 2025-11-27 07:42:58,198 | INFO     | monitor loop #5038: job 0:6891106091 is in state 'finished'
[2025-11-27 02:43:54] 2025-11-27 07:42:58,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:43:54] 2025-11-27 07:42:58,376 | INFO     | time since job start (95769s) is within the limit (172800.0s)
[2025-11-27 02:43:54] 2025-11-27 07:42:59,209 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:43:54] 2025-11-27 07:42:59,231 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2551.649302083334
[2025-11-27 02:43:54] 2025-11-27 07:42:59,273 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6891106091/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:43:54] 2025-11-27 07:42:59,273 | INFO     | extracted standard info from prmon json
[2025-11-27 02:43:54] 2025-11-27 07:42:59,274 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:43:54] 2025-11-27 07:42:59,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:43:54] 2025-11-27 07:42:59,330 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:43:54] 2025-11-27 07:42:59,332 | INFO     | sum of square deviations: 1192958371995.0476
[2025-11-27 02:43:54] 2025-11-27 07:42:59,805 | INFO     | sum of deviations: 4221602724949.919
[2025-11-27 02:43:54] 2025-11-27 07:42:59,805 | INFO     | mean x: 1764181541.2342055
[2025-11-27 02:43:54] 2025-11-27 07:42:59,805 | INFO     | mean y: 2988150.329929802
[2025-11-27 02:43:54] 2025-11-27 07:42:59,805 | INFO     | intersect: -6240040757.146138
[2025-11-27 02:43:54] 2025-11-27 07:42:59,807 | INFO     | chi2: 38.55375527508616
[2025-11-27 02:43:54] 2025-11-27 07:42:59,830 | INFO     | sum of square deviations: 1181576185590.1199
[2025-11-27 02:43:54] 2025-11-27 07:43:00,108 | INFO     | sum of deviations: 4820875602061.493
[2025-11-27 02:43:54] 2025-11-27 07:43:00,109 | INFO     | mean x: 1764181388.7509604
[2025-11-27 02:43:54] 2025-11-27 07:43:00,109 | INFO     | mean y: 2996177.3303457107
[2025-11-27 02:43:54] 2025-11-27 07:43:00,109 | INFO     | intersect: -7194930726.039687
[2025-11-27 02:43:54] 2025-11-27 07:43:00,111 | INFO     | chi2: 34.53311171345074
[2025-11-27 02:43:54] 2025-11-27 07:43:00,111 | INFO     | current chi2=34.53311171345074 (change=10.428669095779643 %)
[2025-11-27 02:43:54] 2025-11-27 07:43:00,120 | INFO     | right removable region: 1561
[2025-11-27 02:43:54] 2025-11-27 07:43:00,122 | INFO     | sum of square deviations: 1181571277966.6226
[2025-11-27 02:43:54] 2025-11-27 07:43:00,444 | INFO     | sum of deviations: 3544848975615.015
[2025-11-27 02:43:54] 2025-11-27 07:43:00,447 | INFO     | mean x: 1764181693.7503202
[2025-11-27 02:43:54] 2025-11-27 07:43:00,449 | INFO     | mean y: 2997213.976952625
[2025-11-27 02:43:54] 2025-11-27 07:43:00,449 | INFO     | intersect: -5289749644.809033
[2025-11-27 02:43:54] 2025-11-27 07:43:00,452 | INFO     | chi2: 34.12818228662152
[2025-11-27 02:43:54] 2025-11-27 07:43:00,452 | INFO     | current chi2=34.12818228662152 (change=11.478967371369128 %)
[2025-11-27 02:43:54] 2025-11-27 07:43:00,452 | INFO     | left removable region: 10
[2025-11-27 02:43:54] 2025-11-27 07:43:00,475 | INFO     | sum of square deviations: 1156780874031.7466
[2025-11-27 02:43:54] 2025-11-27 07:43:00,594 | INFO     | sum of deviations: 3650128073092.46
[2025-11-27 02:43:54] 2025-11-27 07:43:00,595 | INFO     | mean x: 1764181663.2875564
[2025-11-27 02:43:54] 2025-11-27 07:43:00,595 | INFO     | mean y: 3014890.5370728564
[2025-11-27 02:43:54] 2025-11-27 07:43:00,598 | INFO     | intersect: -5563717028.842962
[2025-11-27 02:43:54] 2025-11-27 07:43:00,601 | INFO     | chi2: 26.01620491641472
[2025-11-27 02:43:54] 2025-11-27 07:43:00,602 | INFO     | current memory leak: 3.16 B/s (using 1551 data points, chi2=26.02)
[2025-11-27 02:43:54] 2025-11-27 07:43:00,605 | INFO     | could have reported an average CPU frequency of 2573 MHz (55 samples)
[2025-11-27 02:43:54] 2025-11-27 07:43:00,605 | INFO     | ..............................
[2025-11-27 02:43:54] 2025-11-27 07:43:00,605 | INFO     | . Timing measurements:
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . get job = 0 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . initial setup = 5 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . payload setup = 50 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . stage-in = 0 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . payload execution = 95593 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . stage-out = 9 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,606 | INFO     | . log creation = 3 s
[2025-11-27 02:43:54] 2025-11-27 07:43:00,607 | INFO     | ..............................
[2025-11-27 02:43:54] 2025-11-27 07:43:01,369 | INFO     | 
[2025-11-27 02:43:54] 2025-11-27 07:43:01,370 | INFO     | job summary report
[2025-11-27 02:43:54] 2025-11-27 07:43:01,370 | INFO     | --------------------------------------------------
[2025-11-27 02:43:54] 2025-11-27 07:43:01,370 | INFO     | PanDA job id: 6891106091
[2025-11-27 02:43:54] 2025-11-27 07:43:01,370 | INFO     | task id: 47483661
[2025-11-27 02:43:54] 2025-11-27 07:43:01,370 | INFO     | errors: (none)
[2025-11-27 02:43:54] 2025-11-27 07:43:01,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | pilot state: finished 
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | transexitcode: 0
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | exeerrorcode: 0
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | exeerrordiag: 
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | exitcode: 0
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | exitmsg: OK
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | cpuconsumptiontime: 281936 s
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | nevents: 1000
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | neventsw: 0
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | pid: 1887612
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | pgrp: 1887612
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | corecount: 9
[2025-11-27 02:43:54] 2025-11-27 07:43:01,371 | INFO     | event service: False
[2025-11-27 02:43:54] 2025-11-27 07:43:01,372 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284360, 3: 2284360, 13: 2284388, 24: 2284444, 35: 2284600, 40: 2284890, 47: 2284918, 95645: 2352878, 95646: 2352877, 95657: 236
[2025-11-27 02:43:54] 2025-11-27 07:43:01,372 | INFO     | --------------------------------------------------
[2025-11-27 02:43:54] 2025-11-27 07:43:01,372 | INFO     | 
[2025-11-27 02:43:54] 2025-11-27 07:43:01,372 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 02:43:54] 2025-11-27 07:43:01,497 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,498 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:43:54] 2025-11-27 07:43:01,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,500 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:43:54] 2025-11-27 07:43:01,500 | INFO     | job 6891106091 has completed (purged errors)
[2025-11-27 02:43:54] 2025-11-27 07:43:01,500 | INFO     | overall cleanup function is called
[2025-11-27 02:43:54] 2025-11-27 07:43:02,707 | INFO     | --- collectZombieJob: --- 10, [1887612]
[2025-11-27 02:43:54] 2025-11-27 07:43:02,708 | INFO     | zombie collector waiting for pid 1887612
[2025-11-27 02:43:54] 2025-11-27 07:43:02,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:43:54] 2025-11-27 07:43:02,708 | INFO     | collected zombie processes
[2025-11-27 02:43:54] 2025-11-27 07:43:02,708 | INFO     | will attempt to kill all subprocesses of pid=1887612
[2025-11-27 02:43:54] 2025-11-27 07:43:05,846 | INFO     | PID=1862346 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:43:54] 2025-11-27 07:43:05,847 | INFO     | .. there are 41 such processes running
[2025-11-27 02:43:54] 2025-11-27 07:43:06,585 | INFO     | process IDs to be killed: [1887612] (in reverse order)
[2025-11-27 02:43:54] 2025-11-27 07:43:06,819 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:43:54] 2025-11-27 07:43:06,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:43:54] 2025-11-27 07:43:06,936 | INFO     | did not find any defunct processes belonging to 1887612
[2025-11-27 02:43:54] 2025-11-27 07:43:07,064 | INFO     | did not find any defunct processes belonging to 1887612
[2025-11-27 02:43:54] 2025-11-27 07:43:07,094 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:43:54] 2025-11-27 07:43:07,100 | INFO     | ready for new job
[2025-11-27 02:43:54] 2025-11-27 07:43:07,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:43:54] 2025-11-27 07:43:07,142 | INFO     | ***************************************
[2025-11-27 02:43:54] 2025-11-27 07:43:07,143 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:43:54] 2025-11-27 07:43:07,143 | INFO     | ***************************************
[2025-11-27 02:43:54] 2025-11-27 07:43:07,143 | INFO     | 
[2025-11-27 02:43:54] 2025-11-27 07:43:07,149 | INFO     | architecture information:
[2025-11-27 02:43:54] 2025-11-27 07:43:07,154 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:43:54] 2025-11-27 07:43:07,231 | INFO     | cat /etc/os-release:
[2025-11-27 02:43:54] NAME="CentOS Linux"
[2025-11-27 02:43:54] VERSION="7 (Core)"
[2025-11-27 02:43:54] ID="centos"
[2025-11-27 02:43:54] ID_LIKE="rhel fedora"
[2025-11-27 02:43:54] VERSION_ID="7"
[2025-11-27 02:43:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:43:54] ANSI_COLOR="0;31"
[2025-11-27 02:43:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:43:54] HOME_URL="https://www.centos.org/"
[2025-11-27 02:43:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:43:54] 
[2025-11-27 02:43:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:43:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:43:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:43:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:43:54] 
[2025-11-27 02:43:54] 2025-11-27 07:43:07,232 | INFO     | ***************************************
[2025-11-27 02:43:54] 2025-11-27 07:43:07,735 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 02:43:54] 2025-11-27 07:43:07,793 | INFO     | sufficient remaining disk space (66914877440 B)
[2025-11-27 02:43:54] 2025-11-27 07:43:07,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:43:54] 2025-11-27 07:43:07,793 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:43:54] 2025-11-27 07:43:07,794 | INFO     | update_server=False
[2025-11-27 02:43:54] 2025-11-27 07:43:07,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:43:54] 2025-11-27 07:43:07,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:43:54] 2025-11-27 07:43:07,796 | INFO     | aborting loop
[2025-11-27 02:43:54] 2025-11-27 07:43:07,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:43:54] 2025-11-27 07:43:07,964 | INFO     | all payload control threads have been joined
[2025-11-27 02:43:54] 2025-11-27 07:43:08,079 | INFO     | all job control threads have been joined
[2025-11-27 02:43:54] 2025-11-27 07:43:08,389 | INFO     | all data control threads have been joined
[2025-11-27 02:43:54] 2025-11-27 07:43:08,802 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:08,802 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:08,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:43:54] 2025-11-27 07:43:08,900 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:08,971 | INFO     | [payload] control thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:09,090 | INFO     | [job] control thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:09,397 | INFO     | [data] control thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:09,767 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:09,767 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:10,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:10,034 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:10,054 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:10,226 | INFO     | [job] validate thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:10,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:10,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:43:54] 2025-11-27 07:43:10,889 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:11,511 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:11,844 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:43:54] 2025-11-27 07:43:40,757 | INFO     | PID=1862346 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:43:54] 2025-11-27 07:43:40,757 | INFO     | .. there are 41 such processes running
[2025-11-27 02:43:54] 2025-11-27 07:43:40,760 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:43:54] 2025-11-27 07:43:40,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:43:54] 2025-11-27 07:43:40,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:43:54] 2025-11-27 07:43:47,175 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:43:54] 2025-11-27 07:43:47,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140488921126720)>', '<ExcThread(monitor, started 140488397002496)>']
[2025-11-27 02:43:54] 2025-11-27 07:43:48,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:43:54] 2025-11-27 07:43:48,827 | INFO     | [monitor] control thread has ended
[2025-11-27 02:43:54] 2025-11-27 07:43:52,998 | INFO     | all workflow threads have been joined
[2025-11-27 02:43:54] 2025-11-27 07:43:52,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:43:54] 2025-11-27 07:43:52,999 | INFO     | traces error code: 0
[2025-11-27 02:43:54] 2025-11-27 07:43:52,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:43:54] 2025-11-27 07:43:53,431 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:43:54] 2025-11-27 07:43:53,463 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:43:54] 2025-11-27 07:43:53,494 [wrapper] pilotpid: 1862346
[2025-11-27 02:43:54] 2025-11-27 07:43:53,525 [wrapper] Pilot exit status: 0
[2025-11-27 02:43:54] 2025-11-27 07:43:53,695 [wrapper] pandaids: 6891106091
[2025-11-27 02:43:54] 2025-11-27 07:43:53,813 [wrapper] cleanup supervisor_pilot 3467304 1862347
[2025-11-27 02:43:54] 2025-11-27 07:43:53,842 [wrapper] Test setup, not cleaning
[2025-11-27 02:43:54] 2025-11-27 07:43:53,864 [wrapper] apfmon messages muted
[2025-11-27 02:43:54] 2025-11-27 07:43:53,889 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:43:54] 2025-11-27 07:43:53,900 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:43:54]  *** Error codes and diagnostics ***
[2025-11-27 02:43:54]     "exeErrorCode": 0,
[2025-11-27 02:43:54]     "exeErrorDiag": "",
[2025-11-27 02:43:54]     "pilotErrorCode": 0,
[2025-11-27 02:43:54]     "pilotErrorDiag": "",
[2025-11-27 02:43:54]  *** Listing of results directory ***
[2025-11-27 02:43:54] total 1322672
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-27 02:43:54] -rwx------ 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:43:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:05 run_atlas
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:05 job.xml
[2025-11-27 02:43:54] -rw-r--r-- 2 boincer umatlas 411104548 Nov 26 00:05 EVNT.47483658._000253.pool.root.1
[2025-11-27 02:43:54] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-27 02:43:54] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-27 02:43:54] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 00:05 input.tar.gz
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 00:05 pandaJob.out
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas    991877 Nov 26 00:06 agis_schedconf.cvmfs.json
[2025-11-27 02:43:54] drwx------ 5 boincer umatlas      4096 Nov 26 00:06 pilot3
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas       533 Nov 27 01:58 boinc_task_state.xml
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas 911801134 Nov 27 02:39 HITS.47483661._002224.pool.root.1
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas      6878 Nov 27 02:39 init_data.xml
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas      1059 Nov 27 02:42 memory_monitor_summary.json
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas   1516240 Nov 27 02:42 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas   2618939 Nov 27 02:42 log.47483661._002224.job.log.tgz.1
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas      8634 Nov 27 02:43 heartbeat.json
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas        95 Nov 27 02:43 pilot_heartbeat.json
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas      4824 Nov 27 02:43 pilotlog.txt
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas        29 Nov 27 02:43 wrapper_checkpoint.txt
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas  11176224 Nov 27 02:43 log.47483661._002224.job.log.1
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas       353 Nov 27 02:43 output.list
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas       620 Nov 27 02:43 runtime_log
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas  13813760 Nov 27 02:43 result.tar.gz
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas      8704 Nov 27 02:43 runtime_log.err
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas       660 Nov 27 02:43 cL8KDmqrUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDm28qMDm5hdbzn.diag
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 02:43 boinc_mmap_file
[2025-11-27 02:43:54] -rw-r--r-- 1 boincer umatlas     21897 Nov 27 02:43 stderr.txt
[2025-11-27 02:43:54] HITS file was successfully produced:
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas 911801134 Nov 27 02:39 shared/HITS.pool.root.1
[2025-11-27 02:43:54]  *** Contents of shared directory: ***
[2025-11-27 02:43:54] total 1306000
[2025-11-27 02:43:54] -rw-r--r-- 2 boincer umatlas 411104548 Nov 26 00:05 ATLAS.root_0
[2025-11-27 02:43:54] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-27 02:43:54] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 00:05 input.tar.gz
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas 911801134 Nov 27 02:39 HITS.pool.root.1
[2025-11-27 02:43:54] -rw------- 1 boincer umatlas  13813760 Nov 27 02:43 result.tar.gz
02:43:55 (1850524): run_atlas exited; CPU time 285535.485685
02:43:55 (1850524): called boinc_finish(0)

</stderr_txt>
]]>

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