Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:09 (340663): wrapper (7.7.26015): starting
00:05:09 (340663): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:05:09] Arguments: --nthreads 12
[2025-11-26 00:05:09] Threads: 12
[2025-11-26 00:05:09] Checking for CVMFS
[2025-11-26 00:05:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:11] 2.13.2.0 6892 36271 169264 153309 1 312 27095125 40960000 18219 16776704 0 96767062 99.745 58299138 35543 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:05:11] CVMFS is ok
[2025-11-26 00:05:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:11] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:11] Checking for apptainer binary...
[2025-11-26 00:05:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:11] Running /usr/bin/apptainer --version
[2025-11-26 00:05:11] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:12] c-212-5.aglt2.org
[2025-11-26 00:05:12] apptainer works
[2025-11-26 00:05:12] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:05:12] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:05:12] Starting ATLAS job with PandaID=6891104769
[2025-11-26 00:05:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:29:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:29:45] 2025-11-27 04:28:45,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:45] 2025-11-27 04:28:45,504 | INFO     | PID=350944 has CPU usage=18.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:29:45] 2025-11-27 04:28:45,505 | INFO     | .. there are 18 such processes running
[2025-11-26 23:29:45] 2025-11-27 04:28:46,506 | INFO     | time since job start (84185s) is within the limit (172800.0s)
[2025-11-26 23:29:45] 2025-11-27 04:28:47,735 | INFO     | monitor loop #5254: job 0:6891104769 is in state 'finished'
[2025-11-26 23:29:45] 2025-11-27 04:28:47,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:45] 2025-11-27 04:28:48,516 | INFO     | time since job start (84187s) is within the limit (172800.0s)
[2025-11-26 23:29:45] 2025-11-27 04:28:50,241 | INFO     | monitor loop #5255: job 0:6891104769 is in state 'finished'
[2025-11-26 23:29:45] 2025-11-27 04:28:50,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:45] 2025-11-27 04:28:50,523 | INFO     | time since job start (84189s) is within the limit (172800.0s)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,359 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:29:45] 2025-11-27 04:28:51,364 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2920.6140625000003
[2025-11-26 23:29:45] 2025-11-27 04:28:51,379 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6891104769/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,379 | INFO     | extracted standard info from prmon json
[2025-11-26 23:29:45] 2025-11-27 04:28:51,379 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:29:45] 2025-11-27 04:28:51,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:29:45] 2025-11-27 04:28:51,396 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:29:45] 2025-11-27 04:28:51,398 | INFO     | sum of square deviations: 813043036128.0436
[2025-11-26 23:29:45] 2025-11-27 04:28:51,435 | INFO     | sum of deviations: 5181485965476.25
[2025-11-26 23:29:45] 2025-11-27 04:28:51,435 | INFO     | mean x: 1764175648.8738215
[2025-11-26 23:29:45] 2025-11-27 04:28:51,436 | INFO     | mean y: 3455920.541696882
[2025-11-26 23:29:45] 2025-11-27 04:28:51,436 | INFO     | intersect: -11239554546.416004
[2025-11-26 23:29:45] 2025-11-27 04:28:51,437 | INFO     | chi2: 12.80999380936533
[2025-11-26 23:29:45] 2025-11-27 04:28:51,438 | INFO     | sum of square deviations: 804231690820.2383
[2025-11-26 23:29:45] 2025-11-27 04:28:51,472 | INFO     | sum of deviations: 5784489559378.04
[2025-11-26 23:29:45] 2025-11-27 04:28:51,473 | INFO     | mean x: 1764175496.3879185
[2025-11-26 23:29:45] 2025-11-27 04:28:51,473 | INFO     | mean y: 3466355.8573508007
[2025-11-26 23:29:45] 2025-11-27 04:28:51,473 | INFO     | intersect: -12685482433.711641
[2025-11-26 23:29:45] 2025-11-27 04:28:51,474 | INFO     | chi2: 9.049836904368773
[2025-11-26 23:29:45] 2025-11-27 04:28:51,474 | INFO     | current chi2=9.049836904368773 (change=29.353307745141326 %)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,475 | INFO     | sum of square deviations: 795484253686.8826
[2025-11-26 23:29:45] 2025-11-27 04:28:51,508 | INFO     | sum of deviations: 6144290750744.637
[2025-11-26 23:29:45] 2025-11-27 04:28:51,509 | INFO     | mean x: 1764175343.9021184
[2025-11-26 23:29:45] 2025-11-27 04:28:51,509 | INFO     | mean y: 3472627.9598246897
[2025-11-26 23:29:45] 2025-11-27 04:28:51,509 | INFO     | intersect: -13622952028.456059
[2025-11-26 23:29:45] 2025-11-27 04:28:51,510 | INFO     | chi2: 7.527868478834464
[2025-11-26 23:29:45] 2025-11-27 04:28:51,510 | INFO     | current chi2=7.527868478834464 (change=16.817633749836798 %)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,510 | INFO     | right removable region: 1368
[2025-11-26 23:29:45] 2025-11-27 04:28:51,511 | INFO     | sum of square deviations: 804228516082.0149
[2025-11-26 23:29:45] 2025-11-27 04:28:51,544 | INFO     | sum of deviations: 4674004133549.862
[2025-11-26 23:29:45] 2025-11-27 04:28:51,544 | INFO     | mean x: 1764175801.3871906
[2025-11-26 23:29:45] 2025-11-27 04:28:51,545 | INFO     | mean y: 3464694.8668122273
[2025-11-26 23:29:45] 2025-11-27 04:28:51,545 | INFO     | intersect: -10249547755.081518
[2025-11-26 23:29:45] 2025-11-27 04:28:51,546 | INFO     | chi2: 10.224155129583462
[2025-11-26 23:29:45] 2025-11-27 04:28:51,546 | INFO     | current chi2=10.224155129583462 (change=20.186104054877635 %)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,546 | INFO     | left removable region: 10
[2025-11-26 23:29:45] 2025-11-27 04:28:51,547 | INFO     | sum of square deviations: 776457850530.4282
[2025-11-26 23:29:45] 2025-11-27 04:28:51,584 | INFO     | sum of deviations: 5514388139996.675
[2025-11-26 23:29:45] 2025-11-27 04:28:51,585 | INFO     | mean x: 1764175618.427835
[2025-11-26 23:29:45] 2025-11-27 04:28:51,585 | INFO     | mean y: 3485922.532400589
[2025-11-26 23:29:45] 2025-11-27 04:28:51,585 | INFO     | intersect: -12525654069.398832
[2025-11-26 23:29:45] 2025-11-27 04:28:51,586 | INFO     | chi2: 4.512192164969323
[2025-11-26 23:29:45] 2025-11-27 04:28:51,586 | INFO     | current memory leak: 7.10 B/s (using 1358 data points, chi2=4.51)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | could have reported an average CPU frequency of 3030 MHz (50 samples)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | ..............................
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . Timing measurements:
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . get job = 0 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . initial setup = 3 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . payload setup = 28 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . stage-in = 0 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . payload execution = 84108 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . stage-out = 3 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | . log creation = 0 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,587 | INFO     | ..............................
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | 
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | job summary report
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | --------------------------------------------------
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | PanDA job id: 6891104769
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | task id: 47483661
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | errors: (none)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,681 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | pilot state: finished 
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | transexitcode: 0
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | exeerrorcode: 0
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | exeerrordiag: 
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | exitcode: 0
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | exitmsg: OK
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | cpuconsumptiontime: 217066 s
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | nevents: 1000
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | neventsw: 0
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | pid: 379530
[2025-11-26 23:29:45] 2025-11-27 04:28:51,682 | INFO     | pgrp: 379530
[2025-11-26 23:29:45] 2025-11-27 04:28:51,683 | INFO     | corecount: 12
[2025-11-26 23:29:45] 2025-11-27 04:28:51,683 | INFO     | event service: False
[2025-11-26 23:29:45] 2025-11-27 04:28:51,683 | INFO     | sizes: {0: 2284133, 1: 2284332, 10: 2284594, 11: 2284622, 84141: 2348623, 84146: 2357617, 84147: 2357801, 84159: 2358047}
[2025-11-26 23:29:45] 2025-11-27 04:28:51,683 | INFO     | --------------------------------------------------
[2025-11-26 23:29:45] 2025-11-27 04:28:51,683 | INFO     | 
[2025-11-26 23:29:45] 2025-11-27 04:28:51,683 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 23:29:45] 2025-11-27 04:28:51,703 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,704 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:29:45] 2025-11-27 04:28:51,705 | INFO     | job 6891104769 has completed (purged errors)
[2025-11-26 23:29:45] 2025-11-27 04:28:51,705 | INFO     | overall cleanup function is called
[2025-11-26 23:29:45] 2025-11-27 04:28:52,721 | INFO     | --- collectZombieJob: --- 10, [379530]
[2025-11-26 23:29:45] 2025-11-27 04:28:52,721 | INFO     | zombie collector waiting for pid 379530
[2025-11-26 23:29:45] 2025-11-27 04:28:52,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:29:45] 2025-11-27 04:28:52,721 | INFO     | collected zombie processes
[2025-11-26 23:29:45] 2025-11-27 04:28:52,721 | INFO     | will attempt to kill all subprocesses of pid=379530
[2025-11-26 23:29:45] 2025-11-27 04:28:53,117 | INFO     | process IDs to be killed: [379530] (in reverse order)
[2025-11-26 23:29:45] 2025-11-27 04:28:53,270 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:29:45] 2025-11-27 04:28:53,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:29:45] 2025-11-27 04:28:53,323 | INFO     | did not find any defunct processes belonging to 379530
[2025-11-26 23:29:45] 2025-11-27 04:28:53,353 | INFO     | did not find any defunct processes belonging to 379530
[2025-11-26 23:29:45] 2025-11-27 04:28:53,359 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:29:45] 2025-11-27 04:28:53,359 | INFO     | ready for new job
[2025-11-26 23:29:45] 2025-11-27 04:28:53,359 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:29:45] 2025-11-27 04:28:53,365 | INFO     | ***************************************
[2025-11-26 23:29:45] 2025-11-27 04:28:53,365 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:29:45] 2025-11-27 04:28:53,365 | INFO     | ***************************************
[2025-11-26 23:29:45] 2025-11-27 04:28:53,365 | INFO     | 
[2025-11-26 23:29:45] 2025-11-27 04:28:53,370 | INFO     | architecture information:
[2025-11-26 23:29:45] 2025-11-27 04:28:53,372 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:29:45] 2025-11-27 04:28:53,432 | INFO     | cat /etc/os-release:
[2025-11-26 23:29:45] NAME="CentOS Linux"
[2025-11-26 23:29:45] VERSION="7 (Core)"
[2025-11-26 23:29:45] ID="centos"
[2025-11-26 23:29:45] ID_LIKE="rhel fedora"
[2025-11-26 23:29:45] VERSION_ID="7"
[2025-11-26 23:29:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:29:45] ANSI_COLOR="0;31"
[2025-11-26 23:29:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:29:45] HOME_URL="https://www.centos.org/"
[2025-11-26 23:29:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:29:45] 
[2025-11-26 23:29:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:29:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:29:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:29:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:29:45] 
[2025-11-26 23:29:45] 2025-11-27 04:28:53,432 | INFO     | ***************************************
[2025-11-26 23:29:45] 2025-11-27 04:28:53,936 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 23:29:45] 2025-11-27 04:28:53,999 | INFO     | sufficient remaining disk space (122568048640 B)
[2025-11-26 23:29:45] 2025-11-27 04:28:54,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:29:45] 2025-11-27 04:28:54,000 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:29:45] 2025-11-27 04:28:54,000 | INFO     | update_server=False
[2025-11-26 23:29:45] 2025-11-27 04:28:54,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:29:45] 2025-11-27 04:28:54,000 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:45] 2025-11-27 04:28:54,000 | INFO     | aborting loop
[2025-11-26 23:29:45] 2025-11-27 04:28:54,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:29:45] 2025-11-27 04:28:54,303 | INFO     | all data control threads have been joined
[2025-11-26 23:29:45] 2025-11-27 04:28:54,639 | INFO     | all job control threads have been joined
[2025-11-26 23:29:45] 2025-11-27 04:28:55,005 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,006 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,040 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,243 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,309 | INFO     | [data] control thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,416 | INFO     | all payload control threads have been joined
[2025-11-26 23:29:45] 2025-11-27 04:28:55,523 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:29:45] 2025-11-27 04:28:55,645 | INFO     | [job] control thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,752 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:55,866 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:56,129 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:56,130 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:56,299 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:56,421 | INFO     | [payload] control thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:56,431 | INFO     | [job] validate thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:56,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:45] 2025-11-27 04:28:57,699 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:28:59,562 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:29:45] 2025-11-27 04:29:07,609 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:29:45] 2025-11-27 04:29:08,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140007539251008)>', '<ExcThread(monitor, started 140007050299136)>']
[2025-11-26 23:29:45] 2025-11-27 04:29:13,204 | INFO     | all workflow threads have been joined
[2025-11-26 23:29:45] 2025-11-27 04:29:13,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:29:45] 2025-11-27 04:29:13,204 | INFO     | traces error code: 0
[2025-11-26 23:29:45] 2025-11-27 04:29:13,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:29:45] 2025-11-27 04:29:24,030 | INFO     | PID=350944 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 23:29:45] 2025-11-27 04:29:24,030 | INFO     | .. there are 18 such processes running
[2025-11-26 23:29:45] 2025-11-27 04:29:24,030 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:29:45] 2025-11-27 04:29:24,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:29:45] 2025-11-27 04:29:24,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:29:45] 2025-11-27 04:29:24,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:29:45] 2025-11-27 04:29:24,031 | INFO     | [monitor] control thread has ended
[2025-11-26 23:29:45] 2025-11-27 04:29:24,201 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:29:45] 2025-11-27 04:29:24,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:29:45] 2025-11-27 04:29:24,345 [wrapper] pilotpid: 350944
[2025-11-26 23:29:45] 2025-11-27 04:29:24,375 [wrapper] Pilot exit status: 0
[2025-11-26 23:29:45] 2025-11-27 04:29:24,458 [wrapper] pandaids: 6891104769
[2025-11-26 23:29:45] 2025-11-27 04:29:24,614 [wrapper] cleanup supervisor_pilot 3823418 350945
[2025-11-26 23:29:45] 2025-11-27 04:29:24,618 [wrapper] Test setup, not cleaning
[2025-11-26 23:29:45] 2025-11-27 04:29:24,679 [wrapper] apfmon messages muted
[2025-11-26 23:29:45] 2025-11-27 04:29:24,694 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:29:45] 2025-11-27 04:29:24,697 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:29:45]  *** Error codes and diagnostics ***
[2025-11-26 23:29:45]     "exeErrorCode": 0,
[2025-11-26 23:29:45]     "exeErrorDiag": "",
[2025-11-26 23:29:45]     "pilotErrorCode": 0,
[2025-11-26 23:29:45]     "pilotErrorDiag": "",
[2025-11-26 23:29:45]  *** Listing of results directory ***
[2025-11-26 23:29:45] total 1334152
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-26 23:29:45] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:29:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:05 run_atlas
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:05 job.xml
[2025-11-26 23:29:45] -rw-r--r--. 2 boincer umatlas 410970329 Nov 26 00:05 EVNT.47483658._000226.pool.root.1
[2025-11-26 23:29:45] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-26 23:29:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-26 23:29:45] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 00:05 input.tar.gz
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:05 pandaJob.out
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-26 23:29:45] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:39 boinc_task_state.xml
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 23:22 init_data.xml
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas 924008345 Nov 26 23:27 HITS.47483661._001952.pool.root.1
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas      1071 Nov 26 23:28 memory_monitor_summary.json
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas        95 Nov 26 23:28 pilot_heartbeat.json
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas   2848680 Nov 26 23:28 log.47483661._001952.job.log.tgz.1
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas      8620 Nov 26 23:28 heartbeat.json
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas       822 Nov 26 23:29 pilotlog.txt
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas  10792374 Nov 26 23:29 log.47483661._001952.job.log.1
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas       353 Nov 26 23:29 output.list
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:29 runtime_log
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas  13660160 Nov 26 23:29 result.tar.gz
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas       665 Nov 26 23:29 U45NDmRqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz6qMDmlmJo3m.diag
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas      8701 Nov 26 23:29 runtime_log.err
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:29 wrapper_checkpoint.txt
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:29 boinc_mmap_file
[2025-11-26 23:29:45] -rw-r--r--. 1 boincer umatlas     21326 Nov 26 23:29 stderr.txt
[2025-11-26 23:29:45] HITS file was successfully produced:
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas 924008345 Nov 26 23:27 shared/HITS.pool.root.1
[2025-11-26 23:29:45]  *** Contents of shared directory: ***
[2025-11-26 23:29:45] total 1317636
[2025-11-26 23:29:45] -rw-r--r--. 2 boincer umatlas 410970329 Nov 26 00:05 ATLAS.root_0
[2025-11-26 23:29:45] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-26 23:29:45] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 00:05 input.tar.gz
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas 924008345 Nov 26 23:27 HITS.pool.root.1
[2025-11-26 23:29:45] -rw-------. 1 boincer umatlas  13660160 Nov 26 23:29 result.tar.gz
23:29:46 (340663): run_atlas exited; CPU time 218071.181274
23:29:46 (340663): called boinc_finish(0)

</stderr_txt>
]]>

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