Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:22 (813070): wrapper (7.7.26015): starting
00:05:22 (813070): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:05:23] Arguments: --nthreads 9
[2025-11-26 00:05:23] Threads: 9
[2025-11-26 00:05:23] Checking for CVMFS
[2025-11-26 00:05:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:24] 2.13.3.0 12601 29608 381276 153309 1 561 27459091 32935936 36063 16776704 0 140400759 99.492 176519114 33964 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:05:24] CVMFS is ok
[2025-11-26 00:05:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:24] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:24] Checking for apptainer binary...
[2025-11-26 00:05:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:24] Running /usr/bin/apptainer --version
[2025-11-26 00:05:24] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:25] c6-12-27-4.aglt2.org
[2025-11-26 00:05:25] apptainer works
[2025-11-26 00:05:25] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:05:25] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:05:25] Starting ATLAS job with PandaID=6896715556
[2025-11-26 00:05:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:12 (813070): BOINC client no longer exists - exiting
14:00:12 (813070): timer handler: client dead, exiting
14:10:03 (629820): wrapper (7.7.26015): starting
14:10:03 (629820): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:10:03] Arguments: --nthreads 10
[2025-11-26 14:10:03] Threads: 10
[2025-11-26 14:10:03] This job has been restarted, cleaning up previous attempt
[2025-11-26 14:10:03] Checking for CVMFS
[2025-11-26 14:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:10:04] 2.13.3.0 12601 30452 364708 153332 3 110 31366122 32935937 33116 16776704 0 145660603 99.494 182992717 33903 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:10:04] CVMFS is ok
[2025-11-26 14:10:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:10:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:10:04] Further information can be found at the LHC@home message board.
[2025-11-26 14:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:10:04] Checking for apptainer binary...
[2025-11-26 14:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:10:04] Running /usr/bin/apptainer --version
[2025-11-26 14:10:04] apptainer version 1.4.4-1.el9
[2025-11-26 14:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:10:04] c6-12-27-4.aglt2.org
[2025-11-26 14:10:04] apptainer works
[2025-11-26 14:10:04] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:10:04] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:10:04] Starting ATLAS job with PandaID=6896715556
[2025-11-26 14:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:26:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:26:18] 2025-11-27 21:25:39,950 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:26:18] 2025-11-27 21:25:39,963 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2636.3607187499997
[2025-11-27 16:26:18] 2025-11-27 21:25:39,984 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896715556/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:26:18] 2025-11-27 21:25:39,985 | INFO     | extracted standard info from prmon json
[2025-11-27 16:26:18] 2025-11-27 21:25:39,985 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:26:18] 2025-11-27 21:25:39,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:26:18] 2025-11-27 21:25:40,010 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:26:18] 2025-11-27 21:25:40,012 | INFO     | sum of square deviations: 1152581000836.971
[2025-11-27 16:26:18] 2025-11-27 21:25:40,236 | INFO     | sum of deviations: 7929140625522.621
[2025-11-27 16:26:18] 2025-11-27 21:25:40,236 | INFO     | mean x: 1764231481.6571982
[2025-11-27 16:26:18] 2025-11-27 21:25:40,236 | INFO     | mean y: 3305238.3608779856
[2025-11-27 16:26:18] 2025-11-27 21:25:40,236 | INFO     | intersect: -12133663446.59555
[2025-11-27 16:26:18] 2025-11-27 21:25:40,253 | INFO     | chi2: 7.910063565740456
[2025-11-27 16:26:18] 2025-11-27 21:25:40,256 | INFO     | sum of square deviations: 1141458973818.174
[2025-11-27 16:26:18] 2025-11-27 21:25:40,492 | INFO     | sum of deviations: 8561582677568.001
[2025-11-27 16:26:18] 2025-11-27 21:25:40,493 | INFO     | mean x: 1764231329.1722798
[2025-11-27 16:26:18] 2025-11-27 21:25:40,516 | INFO     | mean y: 3313908.845854922
[2025-11-27 16:26:18] 2025-11-27 21:25:40,516 | INFO     | intersect: -13229410817.59728
[2025-11-27 16:26:18] 2025-11-27 21:25:40,518 | INFO     | chi2: 4.392663637654696
[2025-11-27 16:26:18] 2025-11-27 21:25:40,518 | INFO     | current chi2=4.392663637654696 (change=44.46740407144249 %)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,543 | INFO     | sum of square deviations: 1130408668167.0417
[2025-11-27 16:26:18] 2025-11-27 21:25:40,689 | INFO     | monitor loop #5072: job 0:6896715556 is in state 'finished'
[2025-11-27 16:26:18] 2025-11-27 21:25:40,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,715 | INFO     | time since job start (94519s) is within the limit (172800.0s)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,730 | INFO     | sum of deviations: 8786397753292.726
[2025-11-27 16:26:18] 2025-11-27 21:25:40,730 | INFO     | mean x: 1764231176.6868095
[2025-11-27 16:26:18] 2025-11-27 21:25:40,730 | INFO     | mean y: 3317008.6218323587
[2025-11-27 16:26:18] 2025-11-27 21:25:40,730 | INFO     | intersect: -13709632373.00776
[2025-11-27 16:26:18] 2025-11-27 21:25:40,735 | INFO     | chi2: 3.6728212082990153
[2025-11-27 16:26:18] 2025-11-27 21:25:40,736 | INFO     | current chi2=3.6728212082990153 (change=16.387378791880693 %)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,736 | INFO     | right removable region: 1538
[2025-11-27 16:26:18] 2025-11-27 21:25:40,738 | INFO     | sum of square deviations: 1141454856032.2
[2025-11-27 16:26:18] 2025-11-27 21:25:40,799 | INFO     | sum of deviations: 7388744682433.977
[2025-11-27 16:26:18] 2025-11-27 21:25:40,799 | INFO     | mean x: 1764231634.1703367
[2025-11-27 16:26:18] 2025-11-27 21:25:40,799 | INFO     | mean y: 3312641.0077720205
[2025-11-27 16:26:18] 2025-11-27 21:25:40,799 | INFO     | intersect: -11416724723.299656
[2025-11-27 16:26:18] 2025-11-27 21:25:40,801 | INFO     | chi2: 5.36328255840619
[2025-11-27 16:26:18] 2025-11-27 21:25:40,802 | INFO     | current chi2=5.36328255840619 (change=32.19671986410724 %)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,803 | INFO     | sum of square deviations: 1130401374726.1448
[2025-11-27 16:26:18] 2025-11-27 21:25:40,848 | INFO     | sum of deviations: 7186666955383.879
[2025-11-27 16:26:18] 2025-11-27 21:25:40,849 | INFO     | mean x: 1764231786.677713
[2025-11-27 16:26:18] 2025-11-27 21:25:40,849 | INFO     | mean y: 3315429.007797271
[2025-11-27 16:26:18] 2025-11-27 21:25:40,849 | INFO     | intersect: -11213006991.005384
[2025-11-27 16:26:18] 2025-11-27 21:25:40,851 | INFO     | chi2: 5.205329341443036
[2025-11-27 16:26:18] 2025-11-27 21:25:40,851 | INFO     | current chi2=5.205329341443036 (change=2.945084754402578 %)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,851 | INFO     | left removable region: 20
[2025-11-27 16:26:18] 2025-11-27 21:25:40,853 | INFO     | sum of square deviations: 1084762896362.9497
[2025-11-27 16:26:18] 2025-11-27 21:25:40,905 | INFO     | sum of deviations: 7705334716223.401
[2025-11-27 16:26:18] 2025-11-27 21:25:40,905 | INFO     | mean x: 1764231756.2252965
[2025-11-27 16:26:18] 2025-11-27 21:25:40,905 | INFO     | mean y: 3332601.8438735176
[2025-11-27 16:26:18] 2025-11-27 21:25:40,905 | INFO     | intersect: -12528434703.51403
[2025-11-27 16:26:18] 2025-11-27 21:25:40,907 | INFO     | chi2: 0.7148358205954225
[2025-11-27 16:26:18] 2025-11-27 21:25:40,908 | INFO     | current memory leak: 7.10 B/s (using 1518 data points, chi2=0.71)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,909 | INFO     | could have reported an average CPU frequency of 2638 MHz (55 samples)
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | ..............................
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . Timing measurements:
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . get job = 0 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . initial setup = 2 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . payload setup = 9 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . stage-in = 0 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . payload execution = 94465 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . stage-out = 7 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | . log creation = 1 s
[2025-11-27 16:26:18] 2025-11-27 21:25:40,910 | INFO     | ..............................
[2025-11-27 16:26:18] 2025-11-27 21:25:41,021 | INFO     | 
[2025-11-27 16:26:18] 2025-11-27 21:25:41,021 | INFO     | job summary report
[2025-11-27 16:26:18] 2025-11-27 21:25:41,021 | INFO     | --------------------------------------------------
[2025-11-27 16:26:18] 2025-11-27 21:25:41,021 | INFO     | PanDA job id: 6896715556
[2025-11-27 16:26:18] 2025-11-27 21:25:41,021 | INFO     | task id: 47556161
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | errors: (none)
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | pilot state: finished 
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | transexitcode: 0
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | exeerrorcode: 0
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | exeerrordiag: 
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | exitcode: 0
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | exitmsg: OK
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | cpuconsumptiontime: 271445 s
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | nevents: 1000
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | neventsw: 0
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | pid: 698263
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | pgrp: 698263
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | corecount: 10
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | event service: False
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | sizes: {0: 2284264, 7: 2284526, 11: 2284554, 94478: 2352556, 94479: 2352555, 94487: 2361605, 94489: 2361789, 94501: 2362035}
[2025-11-27 16:26:18] 2025-11-27 21:25:41,022 | INFO     | --------------------------------------------------
[2025-11-27 16:26:18] 2025-11-27 21:25:41,023 | INFO     | 
[2025-11-27 16:26:18] 2025-11-27 21:25:41,023 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 16:26:18] 2025-11-27 21:25:41,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,066 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,066 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,066 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,067 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:26:18] 2025-11-27 21:25:41,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,068 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:26:18] 2025-11-27 21:25:41,068 | INFO     | job 6896715556 has completed (purged errors)
[2025-11-27 16:26:18] 2025-11-27 21:25:41,068 | INFO     | overall cleanup function is called
[2025-11-27 16:26:18] 2025-11-27 21:25:42,093 | INFO     | --- collectZombieJob: --- 10, [698263]
[2025-11-27 16:26:18] 2025-11-27 21:25:42,093 | INFO     | zombie collector waiting for pid 698263
[2025-11-27 16:26:18] 2025-11-27 21:25:42,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:26:18] 2025-11-27 21:25:42,093 | INFO     | collected zombie processes
[2025-11-27 16:26:18] 2025-11-27 21:25:42,093 | INFO     | will attempt to kill all subprocesses of pid=698263
[2025-11-27 16:26:18] 2025-11-27 21:25:42,901 | INFO     | process IDs to be killed: [698263] (in reverse order)
[2025-11-27 16:26:18] 2025-11-27 21:25:43,074 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:26:18] 2025-11-27 21:25:43,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:26:18] 2025-11-27 21:25:43,102 | INFO     | did not find any defunct processes belonging to 698263
[2025-11-27 16:26:18] 2025-11-27 21:25:43,127 | INFO     | did not find any defunct processes belonging to 698263
[2025-11-27 16:26:18] 2025-11-27 21:25:43,129 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:26:18] 2025-11-27 21:25:43,129 | INFO     | ready for new job
[2025-11-27 16:26:18] 2025-11-27 21:25:43,129 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:26:18] 2025-11-27 21:25:43,134 | INFO     | ***************************************
[2025-11-27 16:26:18] 2025-11-27 21:25:43,134 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:26:18] 2025-11-27 21:25:43,135 | INFO     | ***************************************
[2025-11-27 16:26:18] 2025-11-27 21:25:43,135 | INFO     | 
[2025-11-27 16:26:18] 2025-11-27 21:25:43,140 | INFO     | architecture information:
[2025-11-27 16:26:18] 2025-11-27 21:25:43,144 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:26:18] 2025-11-27 21:25:43,198 | INFO     | cat /etc/os-release:
[2025-11-27 16:26:18] NAME="CentOS Linux"
[2025-11-27 16:26:18] VERSION="7 (Core)"
[2025-11-27 16:26:18] ID="centos"
[2025-11-27 16:26:18] ID_LIKE="rhel fedora"
[2025-11-27 16:26:18] VERSION_ID="7"
[2025-11-27 16:26:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:26:18] ANSI_COLOR="0;31"
[2025-11-27 16:26:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:26:18] HOME_URL="https://www.centos.org/"
[2025-11-27 16:26:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:26:18] 
[2025-11-27 16:26:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:26:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:26:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:26:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:26:18] 
[2025-11-27 16:26:18] 2025-11-27 21:25:43,199 | INFO     | ***************************************
[2025-11-27 16:26:18] 2025-11-27 21:25:43,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 16:26:18] 2025-11-27 21:25:43,778 | INFO     | sufficient remaining disk space (89937412096 B)
[2025-11-27 16:26:18] 2025-11-27 21:25:43,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:26:18] 2025-11-27 21:25:43,779 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:26:18] 2025-11-27 21:25:43,779 | INFO     | update_server=False
[2025-11-27 16:26:18] 2025-11-27 21:25:43,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:26:18] 2025-11-27 21:25:44,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:26:18] 2025-11-27 21:25:44,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:26:18] 2025-11-27 21:25:44,204 | INFO     | aborting loop
[2025-11-27 16:26:18] 2025-11-27 21:25:44,663 | INFO     | all payload control threads have been joined
[2025-11-27 16:26:18] 2025-11-27 21:25:44,785 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:44,867 | INFO     | all data control threads have been joined
[2025-11-27 16:26:18] 2025-11-27 21:25:44,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:26:18] 2025-11-27 21:25:44,899 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:44,934 | INFO     | all job control threads have been joined
[2025-11-27 16:26:18] 2025-11-27 21:25:45,046 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,205 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,210 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,250 | INFO     | [job] validate thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,422 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,669 | INFO     | [payload] control thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,872 | INFO     | [data] control thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:45,941 | INFO     | [job] control thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:46,017 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:46,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:26:18] 2025-11-27 21:25:46,188 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:46,885 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:47,045 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:25:48,163 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:26:18] 2025-11-27 21:26:11,516 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:26:18] 2025-11-27 21:26:12,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139429988160)>', '<ExcThread(monitor, started 140138801784576)>']
[2025-11-27 16:26:18] 2025-11-27 21:26:14,590 | INFO     | PID=653021 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 16:26:18] 2025-11-27 21:26:14,590 | INFO     | .. there are 51 such processes running
[2025-11-27 16:26:18] 2025-11-27 21:26:14,591 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:26:18] 2025-11-27 21:26:14,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:26:18] 2025-11-27 21:26:14,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:26:18] 2025-11-27 21:26:14,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:26:18] 2025-11-27 21:26:14,591 | INFO     | [monitor] control thread has ended
[2025-11-27 16:26:18] 2025-11-27 21:26:17,457 | INFO     | all workflow threads have been joined
[2025-11-27 16:26:18] 2025-11-27 21:26:17,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:26:18] 2025-11-27 21:26:17,458 | INFO     | traces error code: 0
[2025-11-27 16:26:18] 2025-11-27 21:26:17,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:26:18] 2025-11-27 21:26:18,180 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:26:18] 2025-11-27 21:26:18,222 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:26:18] 2025-11-27 21:26:18,245 [wrapper] pilotpid: 653021
[2025-11-27 16:26:18] 2025-11-27 21:26:18,263 [wrapper] Pilot exit status: 0
[2025-11-27 16:26:18] 2025-11-27 21:26:18,367 [wrapper] pandaids: 6896715556 6896715556
[2025-11-27 16:26:18] 2025-11-27 21:26:18,653 [wrapper] cleanup supervisor_pilot  140234 653022
[2025-11-27 16:26:18] 2025-11-27 21:26:18,660 [wrapper] Test setup, not cleaning
[2025-11-27 16:26:18] 2025-11-27 21:26:18,666 [wrapper] apfmon messages muted
[2025-11-27 16:26:18] 2025-11-27 21:26:18,669 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:26:18] 2025-11-27 21:26:18,671 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:26:18]  *** Error codes and diagnostics ***
[2025-11-27 16:26:18]     "exeErrorCode": 0,
[2025-11-27 16:26:18]     "exeErrorDiag": "",
[2025-11-27 16:26:18]     "pilotErrorCode": 0,
[2025-11-27 16:26:18]     "pilotErrorDiag": "",
[2025-11-27 16:26:18]  *** Listing of results directory ***
[2025-11-27 16:26:18] total 1725148
[2025-11-27 16:26:18] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 16:26:18] -rwx------. 1 boincer umatlas     36292 Nov 25 02:12 runpilot2-wrapper.sh
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:12 queuedata.json
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:26:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:05 run_atlas
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:05 job.xml
[2025-11-27 16:26:18] -rw-r--r--. 3 boincer umatlas 409691071 Nov 26 00:05 EVNT.47483658._002132.pool.root.1
[2025-11-27 16:26:18] -rw-r--r--. 3 boincer umatlas 409691071 Nov 26 00:05 ATLAS.root_0
[2025-11-27 16:26:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:05 start_atlas.sh
[2025-11-27 16:26:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-27 16:26:18] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:05 input.tar.gz
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 14:10 pandaJob.out
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas        57 Nov 26 14:10 setup.sh.local
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas    991522 Nov 26 14:10 agis_schedconf.cvmfs.json
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas       534 Nov 27 16:10 boinc_task_state.xml
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 16:21 init_data.xml
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas 915487760 Nov 27 16:24 HITS.47556161._001152.pool.root.1
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas      1070 Nov 27 16:25 memory_monitor_summary.json
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas   2710032 Nov 27 16:25 log.47556161._001152.job.log.tgz.1
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas      8645 Nov 27 16:25 heartbeat.json
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:25 boinc_mmap_file
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas        30 Nov 27 16:25 wrapper_checkpoint.txt
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas        96 Nov 27 16:26 pilot_heartbeat.json
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas      4823 Nov 27 16:26 pilotlog.txt
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas  11162041 Nov 27 16:26 log.47556161._001152.job.log.1
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas       353 Nov 27 16:26 output.list
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:26 runtime_log
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas  13895680 Nov 27 16:26 result.tar.gz
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas      9440 Nov 27 16:26 runtime_log.err
[2025-11-27 16:26:18] -rw-------. 1 boincer umatlas       791 Nov 27 16:26 ajRLDmiO2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYEMKDm1iM2nn.diag
[2025-11-27 16:26:18] -rw-r--r--. 1 boincer umatlas     23618 Nov 27 16:26 stderr.txt
[2025-11-27 16:26:19] HITS file was successfully produced:
[2025-11-27 16:26:19] -rw-------. 1 boincer umatlas 915487760 Nov 27 16:24 shared/HITS.pool.root.1
[2025-11-27 16:26:19]  *** Contents of shared directory: ***
[2025-11-27 16:26:19] total 1308300
[2025-11-27 16:26:19] -rw-r--r--. 3 boincer umatlas 409691071 Nov 26 00:05 ATLAS.root_0
[2025-11-27 16:26:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:05 start_atlas.sh
[2025-11-27 16:26:19] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:05 input.tar.gz
[2025-11-27 16:26:19] -rw-------. 1 boincer umatlas 915487760 Nov 27 16:24 HITS.pool.root.1
[2025-11-27 16:26:19] -rw-------. 1 boincer umatlas  13895680 Nov 27 16:26 result.tar.gz
16:26:20 (629820): run_atlas exited; CPU time 275711.157069
16:26:20 (629820): called boinc_finish(0)

</stderr_txt>
]]>

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