Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:01:26 (614485): wrapper (7.7.26015): starting
11:01:26 (614485): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:01:26] Arguments: --nthreads 8
[2025-11-26 11:01:26] Threads: 8
[2025-11-26 11:01:26] Checking for CVMFS
[2025-11-26 11:01:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:01:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:01:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:01:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:01:29] 2.13.2.0 12166 36055 275424 153326 1 158 34840355 40960000 20946 16776704 0 67066507 99.735 39490169 33639 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 11:01:29] CVMFS is ok
[2025-11-26 11:01:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:01:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:01:29] Further information can be found at the LHC@home message board.
[2025-11-26 11:01:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:01:29] Checking for apptainer binary...
[2025-11-26 11:01:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:01:29] Running /usr/bin/apptainer --version
[2025-11-26 11:01:29] apptainer version 1.4.4-1.el9
[2025-11-26 11:01:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:01:30] c-211-33-1.aglt2.org
[2025-11-26 11:01:30] apptainer works
[2025-11-26 11:01:30] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:01:30] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:01:30] Starting ATLAS job with PandaID=6891107105
[2025-11-26 11:01:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:52:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:52:48] 2025-11-27 23:51:05,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:52:48] 2025-11-27 23:51:05,559 | INFO     | PID=618352 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:52:48] 2025-11-27 23:51:05,559 | INFO     | .. there are 19 such processes running
[2025-11-27 18:52:48] 2025-11-27 23:51:06,561 | INFO     | time since job start (114497s) is within the limit (172800.0s)
[2025-11-27 18:52:48] 2025-11-27 23:51:07,995 | INFO     | monitor loop #6330: job 0:6891107105 is in state 'finished'
[2025-11-27 18:52:48] 2025-11-27 23:51:07,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:52:48] 2025-11-27 23:51:08,603 | INFO     | time since job start (114499s) is within the limit (172800.0s)
[2025-11-27 18:52:48] 2025-11-27 23:51:10,514 | INFO     | monitor loop #6331: job 0:6891107105 is in state 'finished'
[2025-11-27 18:52:48] 2025-11-27 23:51:10,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:52:48] 2025-11-27 23:51:10,643 | INFO     | time since job start (114501s) is within the limit (172800.0s)
[2025-11-27 18:52:48] 2025-11-27 23:51:12,650 | INFO     | time since job start (114503s) is within the limit (172800.0s)
[2025-11-27 18:52:48] 2025-11-27 23:51:13,020 | INFO     | monitor loop #6332: job 0:6891107105 is in state 'finished'
[2025-11-27 18:52:48] 2025-11-27 23:51:13,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:52:48] 2025-11-27 23:51:14,657 | INFO     | time since job start (114505s) is within the limit (172800.0s)
[2025-11-27 18:52:48] 2025-11-27 23:51:15,435 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:52:48] 2025-11-27 23:51:15,530 | INFO     | monitor loop #6333: job 0:6891107105 is in state 'finished'
[2025-11-27 18:52:48] 2025-11-27 23:51:15,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:52:48] 2025-11-27 23:51:15,532 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2528.8511145833345
[2025-11-27 18:52:48] 2025-11-27 23:51:15,663 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891107105/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:52:48] 2025-11-27 23:51:15,664 | INFO     | extracted standard info from prmon json
[2025-11-27 18:52:48] 2025-11-27 23:51:15,664 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:52:48] 2025-11-27 23:51:15,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:52:48] 2025-11-27 23:51:15,862 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:52:48] 2025-11-27 23:51:15,889 | INFO     | sum of square deviations: 2040756029611.335
[2025-11-27 18:52:48] 2025-11-27 23:51:16,197 | INFO     | sum of deviations: 7290148368397.975
[2025-11-27 18:52:48] 2025-11-27 23:51:16,200 | INFO     | mean x: 1764230263.2294557
[2025-11-27 18:52:48] 2025-11-27 23:51:16,200 | INFO     | mean y: 2971874.116328709
[2025-11-27 18:52:48] 2025-11-27 23:51:16,201 | INFO     | intersect: -6299349514.790722
[2025-11-27 18:52:48] 2025-11-27 23:51:16,220 | INFO     | chi2: 18.57302822689616
[2025-11-27 18:52:48] 2025-11-27 23:51:16,223 | INFO     | sum of square deviations: 2024467092944.1008
[2025-11-27 18:52:48] 2025-11-27 23:51:16,420 | INFO     | sum of deviations: 7959592588955.235
[2025-11-27 18:52:48] 2025-11-27 23:51:16,420 | INFO     | mean x: 1764230110.7394328
[2025-11-27 18:52:48] 2025-11-27 23:51:16,420 | INFO     | mean y: 2978140.0620652754
[2025-11-27 18:52:48] 2025-11-27 23:51:16,420 | INFO     | intersect: -6933441307.601935
[2025-11-27 18:52:48] 2025-11-27 23:51:16,423 | INFO     | chi2: 15.141652747512977
[2025-11-27 18:52:48] 2025-11-27 23:51:16,428 | INFO     | current chi2=15.141652747512977 (change=18.475045843165763 %)
[2025-11-27 18:52:48] 2025-11-27 23:51:16,428 | INFO     | right removable region: 1868
[2025-11-27 18:52:48] 2025-11-27 23:51:16,431 | INFO     | sum of square deviations: 2024462829654.1057
[2025-11-27 18:52:48] 2025-11-27 23:51:16,680 | INFO     | sum of deviations: 6527479242038.866
[2025-11-27 18:52:48] 2025-11-27 23:51:16,681 | INFO     | mean x: 1764230415.7394328
[2025-11-27 18:52:48] 2025-11-27 23:51:16,681 | INFO     | mean y: 2979012.4103798824
[2025-11-27 18:52:48] 2025-11-27 23:51:16,681 | INFO     | intersect: -5685432376.639592
[2025-11-27 18:52:48] 2025-11-27 23:51:16,684 | INFO     | chi2: 14.636861854008806
[2025-11-27 18:52:48] 2025-11-27 23:51:16,684 | INFO     | current chi2=14.636861854008806 (change=21.19291654974859 %)
[2025-11-27 18:52:48] 2025-11-27 23:51:16,684 | INFO     | left removable region: 10
[2025-11-27 18:52:48] 2025-11-27 23:51:16,687 | INFO     | sum of square deviations: 1988928578402.879
[2025-11-27 18:52:48] 2025-11-27 23:51:16,724 | INFO     | time since job start (114507s) is within the limit (172800.0s)
[2025-11-27 18:52:48] 2025-11-27 23:51:16,793 | INFO     | sum of deviations: 6824326437445.432
[2025-11-27 18:52:48] 2025-11-27 23:51:16,793 | INFO     | mean x: 1764230385.2615716
[2025-11-27 18:52:48] 2025-11-27 23:51:16,793 | INFO     | mean y: 2991101.990850377
[2025-11-27 18:52:48] 2025-11-27 23:51:16,793 | INFO     | intersect: -6050360531.959232
[2025-11-27 18:52:48] 2025-11-27 23:51:16,800 | INFO     | chi2: 9.122397699739277
[2025-11-27 18:52:48] 2025-11-27 23:51:16,801 | INFO     | current memory leak: 3.43 B/s (using 1858 data points, chi2=9.12)
[2025-11-27 18:52:48] 2025-11-27 23:51:16,808 | INFO     | could have reported an average CPU frequency of 2539 MHz (66 samples)
[2025-11-27 18:52:48] 2025-11-27 23:51:16,809 | INFO     | ..............................
[2025-11-27 18:52:48] 2025-11-27 23:51:16,809 | INFO     | . Timing measurements:
[2025-11-27 18:52:48] 2025-11-27 23:51:16,809 | INFO     | . get job = 0 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,809 | INFO     | . initial setup = 4 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,809 | INFO     | . payload setup = 50 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,809 | INFO     | . stage-in = 0 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,810 | INFO     | . payload execution = 114323 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,810 | INFO     | . stage-out = 11 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,810 | INFO     | . log creation = 4 s
[2025-11-27 18:52:48] 2025-11-27 23:51:16,810 | INFO     | ..............................
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | 
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | job summary report
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | --------------------------------------------------
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | PanDA job id: 6891107105
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | task id: 47483661
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | errors: (none)
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | pilot state: finished 
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | transexitcode: 0
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | exeerrorcode: 0
[2025-11-27 18:52:48] 2025-11-27 23:51:17,624 | INFO     | exeerrordiag: 
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | exitcode: 0
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | exitmsg: OK
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | cpuconsumptiontime: 290896 s
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | nevents: 1000
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | neventsw: 0
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | pid: 628604
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | pgrp: 628604
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | corecount: 8
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | event service: False
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | sizes: {0: 2284077, 1: 2284161, 2: 2284360, 14: 2284360, 26: 2284388, 38: 2284806, 49: 2284834, 114378: 2361183, 114379: 2361182, 114391: 2370232, 114394: 2370288,
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | --------------------------------------------------
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | 
[2025-11-27 18:52:48] 2025-11-27 23:51:17,625 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 18:52:48] 2025-11-27 23:51:17,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:52:48] 2025-11-27 23:51:17,778 | INFO     | job 6891107105 has completed (purged errors)
[2025-11-27 18:52:48] 2025-11-27 23:51:17,778 | INFO     | overall cleanup function is called
[2025-11-27 18:52:48] 2025-11-27 23:51:18,797 | INFO     | --- collectZombieJob: --- 10, [628604]
[2025-11-27 18:52:48] 2025-11-27 23:51:18,797 | INFO     | zombie collector waiting for pid 628604
[2025-11-27 18:52:48] 2025-11-27 23:51:18,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:52:48] 2025-11-27 23:51:18,797 | INFO     | collected zombie processes
[2025-11-27 18:52:48] 2025-11-27 23:51:18,797 | INFO     | will attempt to kill all subprocesses of pid=628604
[2025-11-27 18:52:48] 2025-11-27 23:51:21,051 | INFO     | process IDs to be killed: [628604] (in reverse order)
[2025-11-27 18:52:48] 2025-11-27 23:51:21,644 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:52:48] 2025-11-27 23:51:21,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:52:48] 2025-11-27 23:51:21,664 | INFO     | did not find any defunct processes belonging to 628604
[2025-11-27 18:52:48] 2025-11-27 23:51:21,732 | INFO     | did not find any defunct processes belonging to 628604
[2025-11-27 18:52:48] 2025-11-27 23:51:21,750 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:52:48] 2025-11-27 23:51:21,750 | INFO     | ready for new job
[2025-11-27 18:52:48] 2025-11-27 23:51:21,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:52:48] 2025-11-27 23:51:21,800 | INFO     | ***************************************
[2025-11-27 18:52:48] 2025-11-27 23:51:21,801 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:52:48] 2025-11-27 23:51:21,801 | INFO     | ***************************************
[2025-11-27 18:52:48] 2025-11-27 23:51:21,801 | INFO     | 
[2025-11-27 18:52:48] 2025-11-27 23:51:21,833 | INFO     | architecture information:
[2025-11-27 18:52:48] 2025-11-27 23:51:21,857 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:52:48] 2025-11-27 23:51:21,952 | INFO     | cat /etc/os-release:
[2025-11-27 18:52:48] NAME="CentOS Linux"
[2025-11-27 18:52:48] VERSION="7 (Core)"
[2025-11-27 18:52:48] ID="centos"
[2025-11-27 18:52:48] ID_LIKE="rhel fedora"
[2025-11-27 18:52:48] VERSION_ID="7"
[2025-11-27 18:52:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:52:48] ANSI_COLOR="0;31"
[2025-11-27 18:52:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:52:48] HOME_URL="https://www.centos.org/"
[2025-11-27 18:52:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:52:48] 
[2025-11-27 18:52:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:52:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:52:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:52:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:52:48] 
[2025-11-27 18:52:48] 2025-11-27 23:51:21,953 | INFO     | ***************************************
[2025-11-27 18:52:48] 2025-11-27 23:51:22,456 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 18:52:48] 2025-11-27 23:51:22,572 | INFO     | sufficient remaining disk space (119680270336 B)
[2025-11-27 18:52:48] 2025-11-27 23:51:22,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:52:48] 2025-11-27 23:51:22,573 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:52:48] 2025-11-27 23:51:22,574 | INFO     | update_server=False
[2025-11-27 18:52:48] 2025-11-27 23:51:22,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:52:48] 2025-11-27 23:51:22,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:52:48] 2025-11-27 23:51:22,575 | INFO     | aborting loop
[2025-11-27 18:52:48] 2025-11-27 23:51:22,575 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:52:48] 2025-11-27 23:51:22,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:52:48] 2025-11-27 23:51:22,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:52:48] 2025-11-27 23:51:22,608 | INFO     | all payload control threads have been joined
[2025-11-27 18:52:48] 2025-11-27 23:51:22,705 | INFO     | all job control threads have been joined
[2025-11-27 18:52:48] 2025-11-27 23:51:23,407 | INFO     | all data control threads have been joined
[2025-11-27 18:52:48] 2025-11-27 23:51:23,581 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:23,582 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:23,590 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:23,614 | INFO     | [payload] control thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:23,711 | INFO     | [job] control thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:23,814 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,126 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,134 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,134 | INFO     | [job] validate thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,413 | INFO     | [data] control thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,467 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,583 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,840 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:24,902 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:26,585 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:52:48] 2025-11-27 23:51:51,631 | INFO     | PID=618352 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:52:48] 2025-11-27 23:51:51,632 | INFO     | .. there are 19 such processes running
[2025-11-27 18:52:48] 2025-11-27 23:51:51,633 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:52:48] 2025-11-27 23:51:51,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:52:48] 2025-11-27 23:51:51,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:52:48] 2025-11-27 23:52:18,596 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:52:48] 2025-11-27 23:52:20,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139915109992256)>', '<ExcThread(monitor, started 139914398136064)>']
[2025-11-27 18:52:48] 2025-11-27 23:52:20,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:52:48] 2025-11-27 23:52:20,870 | INFO     | [monitor] control thread has ended
[2025-11-27 18:52:48] 2025-11-27 23:52:25,339 | INFO     | all workflow threads have been joined
[2025-11-27 18:52:48] 2025-11-27 23:52:25,339 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:52:48] 2025-11-27 23:52:25,339 | INFO     | traces error code: 0
[2025-11-27 18:52:48] 2025-11-27 23:52:25,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:52:48] 2025-11-27 23:52:25,854 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:52:48] 2025-11-27 23:52:25,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:52:48] 2025-11-27 23:52:25,925 [wrapper] pilotpid: 618352
[2025-11-27 18:52:48] 2025-11-27 23:52:25,948 [wrapper] Pilot exit status: 0
[2025-11-27 18:52:48] 2025-11-27 23:52:26,171 [wrapper] pandaids: 6891107105
[2025-11-27 18:52:48] 2025-11-27 23:52:26,707 [wrapper] cleanup supervisor_pilot 3452134 618353
[2025-11-27 18:52:48] 2025-11-27 23:52:26,736 [wrapper] Test setup, not cleaning
[2025-11-27 18:52:48] 2025-11-27 23:52:26,814 [wrapper] apfmon messages muted
[2025-11-27 18:52:48] 2025-11-27 23:52:26,853 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:52:48] 2025-11-27 23:52:26,898 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:52:48]  *** Error codes and diagnostics ***
[2025-11-27 18:52:48]     "exeErrorCode": 0,
[2025-11-27 18:52:48]     "exeErrorDiag": "",
[2025-11-27 18:52:48]     "pilotErrorCode": 0,
[2025-11-27 18:52:48]     "pilotErrorDiag": "",
[2025-11-27 18:52:48]  *** Listing of results directory ***
[2025-11-27 18:52:48] total 1330328
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 02:02 pilot3.tar.gz
[2025-11-27 18:52:48] -rwx------. 1 boincer umatlas     36292 Nov 18 02:02 runpilot2-wrapper.sh
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:03 queuedata.json
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:52:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:01 run_atlas
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:01 job.xml
[2025-11-27 18:52:48] -rw-r--r--. 2 boincer umatlas 408915294 Nov 26 11:01 EVNT.47483658._000291.pool.root.1
[2025-11-27 18:52:48] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:01 start_atlas.sh
[2025-11-27 18:52:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:01 shared
[2025-11-27 18:52:48] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 11:01 input.tar.gz
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:01 boinc_lockfile
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 11:01 pandaJob.out
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas    991855 Nov 26 11:02 agis_schedconf.cvmfs.json
[2025-11-27 18:52:48] drwx------. 5 boincer umatlas      4096 Nov 26 11:02 pilot3
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas       534 Nov 27 18:20 boinc_task_state.xml
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas 916585259 Nov 27 18:47 HITS.47483661._002610.pool.root.1
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 18:48 init_data.xml
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas      1063 Nov 27 18:50 memory_monitor_summary.json
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas   2724475 Nov 27 18:50 log.47483661._002610.job.log.tgz.1
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas      8624 Nov 27 18:51 heartbeat.json
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas        95 Nov 27 18:51 pilot_heartbeat.json
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas      4824 Nov 27 18:52 pilotlog.txt
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas  13694134 Nov 27 18:52 log.47483661._002610.job.log.1
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas       353 Nov 27 18:52 output.list
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:52 runtime_log
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas  16435200 Nov 27 18:52 result.tar.gz
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas      8715 Nov 27 18:52 runtime_log.err
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas       665 Nov 27 18:52 K5PMDmbuUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuTKODm5G0c2m.diag
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:52 wrapper_checkpoint.txt
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:52 boinc_mmap_file
[2025-11-27 18:52:48] -rw-r--r--. 1 boincer umatlas     21896 Nov 27 18:52 stderr.txt
[2025-11-27 18:52:48] HITS file was successfully produced:
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas 916585259 Nov 27 18:47 shared/HITS.pool.root.1
[2025-11-27 18:52:48]  *** Contents of shared directory: ***
[2025-11-27 18:52:48] total 1311092
[2025-11-27 18:52:48] -rw-r--r--. 2 boincer umatlas 408915294 Nov 26 11:01 ATLAS.root_0
[2025-11-27 18:52:48] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:01 start_atlas.sh
[2025-11-27 18:52:48] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 11:01 input.tar.gz
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas 916585259 Nov 27 18:47 HITS.pool.root.1
[2025-11-27 18:52:48] -rw-------. 1 boincer umatlas  16435200 Nov 27 18:52 result.tar.gz
18:52:50 (614485): run_atlas exited; CPU time 294340.867106
18:52:50 (614485): called boinc_finish(0)

</stderr_txt>
]]>

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