Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:59:03 (749593): wrapper (7.7.26015): starting
21:59:03 (749593): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:59:03] Arguments: --nthreads 8
[2025-11-26 21:59:03] Threads: 8
[2025-11-26 21:59:03] Checking for CVMFS
[2025-11-26 21:59:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:59:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:59:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:59:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:59:04] 2.13.2.0 7301 37426 272992 153343 2 750 40387619 40960000 26839 16776704 0 242516134 99.677 209761408 35229 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 21:59:04] CVMFS is ok
[2025-11-26 21:59:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:59:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:59:04] Further information can be found at the LHC@home message board.
[2025-11-26 21:59:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:59:04] Checking for apptainer binary...
[2025-11-26 21:59:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:59:04] Running /usr/bin/apptainer --version
[2025-11-26 21:59:04] apptainer version 1.4.4-1.el9
[2025-11-26 21:59:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:59:04] c-212-17.aglt2.org
[2025-11-26 21:59:04] apptainer works
[2025-11-26 21:59:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:59:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:59:04] Starting ATLAS job with PandaID=6891106410
[2025-11-26 21:59:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:18:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:18:13] 2025-11-27 20:17:18,327 | INFO     | mean x: 1764243466.1911764
[2025-11-27 15:18:13] 2025-11-27 20:17:18,327 | INFO     | mean y: 2892219.753921569
[2025-11-27 15:18:13] 2025-11-27 20:17:18,327 | INFO     | intersect: -14299489255.648207
[2025-11-27 15:18:13] 2025-11-27 20:17:18,328 | INFO     | chi2: 7.172774542877587
[2025-11-27 15:18:13] 2025-11-27 20:17:18,353 | INFO     | sum of square deviations: 324256605073.3495
[2025-11-27 15:18:13] 2025-11-27 20:17:18,390 | INFO     | sum of deviations: 3033519728926.926
[2025-11-27 15:18:13] 2025-11-27 20:17:18,391 | INFO     | mean x: 1764243313.6995075
[2025-11-27 15:18:13] 2025-11-27 20:17:18,391 | INFO     | mean y: 2903805.252216749
[2025-11-27 15:18:13] 2025-11-27 20:17:18,391 | INFO     | intersect: -16502132067.56905
[2025-11-27 15:18:13] 2025-11-27 20:17:18,392 | INFO     | chi2: 3.6136468637276034
[2025-11-27 15:18:13] 2025-11-27 20:17:18,392 | INFO     | current chi2=3.6136468637276034 (change=49.61995749168112 %)
[2025-11-27 15:18:13] 2025-11-27 20:17:18,393 | INFO     | sum of square deviations: 319488493914.796
[2025-11-27 15:18:13] 2025-11-27 20:17:18,467 | INFO     | sum of deviations: 3198047716479.594
[2025-11-27 15:18:13] 2025-11-27 20:17:18,467 | INFO     | mean x: 1764243161.20198
[2025-11-27 15:18:13] 2025-11-27 20:17:18,468 | INFO     | mean y: 2909062.501980198
[2025-11-27 15:18:13] 2025-11-27 20:17:18,468 | INFO     | intersect: -17656987680.137604
[2025-11-27 15:18:13] 2025-11-27 20:17:18,468 | INFO     | chi2: 2.642500021174369
[2025-11-27 15:18:13] 2025-11-27 20:17:18,469 | INFO     | current chi2=2.642500021174369 (change=26.874425730450664 %)
[2025-11-27 15:18:13] 2025-11-27 20:17:18,469 | INFO     | sum of square deviations: 314767421754.8199
[2025-11-27 15:18:13] 2025-11-27 20:17:18,664 | INFO     | sum of deviations: 3180096788258.1294
[2025-11-27 15:18:13] 2025-11-27 20:17:18,664 | INFO     | mean x: 1764243008.7054727
[2025-11-27 15:18:13] 2025-11-27 20:17:18,664 | INFO     | mean y: 2908480.7402985073
[2025-11-27 15:18:13] 2025-11-27 20:17:18,664 | INFO     | intersect: -17821247190.812206
[2025-11-27 15:18:13] 2025-11-27 20:17:18,665 | INFO     | chi2: 2.6144697088865185
[2025-11-27 15:18:13] 2025-11-27 20:17:18,665 | INFO     | current chi2=2.6144697088865185 (change=1.0607497469533926 %)
[2025-11-27 15:18:13] 2025-11-27 20:17:18,665 | INFO     | right removable region: 1004
[2025-11-27 15:18:13] 2025-11-27 20:17:18,666 | INFO     | sum of square deviations: 324255614801.74744
[2025-11-27 15:18:13] 2025-11-27 20:17:18,832 | INFO     | sum of deviations: 2379604628534.9185
[2025-11-27 15:18:13] 2025-11-27 20:17:18,833 | INFO     | mean x: 1764243618.698522
[2025-11-27 15:18:13] 2025-11-27 20:17:18,833 | INFO     | mean y: 2901332.744827586
[2025-11-27 15:18:13] 2025-11-27 20:17:18,833 | INFO     | intersect: -12944298620.8628
[2025-11-27 15:18:13] 2025-11-27 20:17:18,834 | INFO     | chi2: 4.900011119937517
[2025-11-27 15:18:13] 2025-11-27 20:17:18,834 | INFO     | current chi2=4.900011119937517 (change=31.685973250014886 %)
[2025-11-27 15:18:13] 2025-11-27 20:17:18,835 | INFO     | sum of square deviations: 319487070489.3915
[2025-11-27 15:18:13] 2025-11-27 20:17:18,976 | INFO     | sum of deviations: 2290445654747.193
[2025-11-27 15:18:13] 2025-11-27 20:17:18,977 | INFO     | mean x: 1764243771.2029703
[2025-11-27 15:18:13] 2025-11-27 20:17:18,977 | INFO     | mean y: 2904183.9356435644
[2025-11-27 15:18:13] 2025-11-27 20:17:18,998 | INFO     | intersect: -12645196014.538027
[2025-11-27 15:18:13] 2025-11-27 20:17:18,999 | INFO     | chi2: 4.8249706618451205
[2025-11-27 15:18:13] 2025-11-27 20:17:18,999 | INFO     | current chi2=4.8249706618451205 (change=1.5314344448539403 %)
[2025-11-27 15:18:13] 2025-11-27 20:17:18,999 | INFO     | left removable region: 20
[2025-11-27 15:18:13] 2025-11-27 20:17:19,000 | INFO     | sum of square deviations: 295444564030.46277
[2025-11-27 15:18:13] 2025-11-27 20:17:19,154 | INFO     | sum of deviations: 2639513748724.8066
[2025-11-27 15:18:13] 2025-11-27 20:17:19,154 | INFO     | mean x: 1764243588.226626
[2025-11-27 15:18:13] 2025-11-27 20:17:19,154 | INFO     | mean y: 2925833.4806910567
[2025-11-27 15:18:13] 2025-11-27 20:17:19,155 | INFO     | intersect: -15758898123.258673
[2025-11-27 15:18:13] 2025-11-27 20:17:19,155 | INFO     | chi2: 0.14869236266860514
[2025-11-27 15:18:13] 2025-11-27 20:17:19,156 | INFO     | current memory leak: 8.93 B/s (using 984 data points, chi2=0.15)
[2025-11-27 15:18:13] 2025-11-27 20:17:19,254 | INFO     | could have reported an average CPU frequency of 3210 MHz (38 samples)
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | ..............................
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . Timing measurements:
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . get job = 0 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . initial setup = 2 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . payload setup = 6 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . stage-in = 0 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . payload execution = 62223 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . stage-out = 16 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | . log creation = 2 s
[2025-11-27 15:18:13] 2025-11-27 20:17:19,255 | INFO     | ..............................
[2025-11-27 15:18:13] 2025-11-27 20:17:19,884 | INFO     | time since job start (62282s) is within the limit (172800.0s)
[2025-11-27 15:18:13] 2025-11-27 20:17:20,414 | INFO     | 
[2025-11-27 15:18:13] 2025-11-27 20:17:20,414 | INFO     | job summary report
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | --------------------------------------------------
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | PanDA job id: 6891106410
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | task id: 47483661
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | errors: (none)
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | pilot state: finished 
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | transexitcode: 0
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | exeerrorcode: 0
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | exeerrordiag: 
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | exitcode: 0
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | exitmsg: OK
[2025-11-27 15:18:13] 2025-11-27 20:17:20,415 | INFO     | cpuconsumptiontime: 201527 s
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | nevents: 1000
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | neventsw: 0
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | pid: 768639
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | pgrp: 768639
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | corecount: 8
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | event service: False
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | sizes: {0: 2284133, 1: 2284332, 5: 2284594, 11: 2284650, 62235: 2339490, 62253: 2348484, 62255: 2348668, 62267: 2348914}
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | --------------------------------------------------
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | 
[2025-11-27 15:18:13] 2025-11-27 20:17:20,416 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 15:18:13] 2025-11-27 20:17:20,478 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,479 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:18:13] 2025-11-27 20:17:20,480 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,480 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:18:13] 2025-11-27 20:17:20,480 | INFO     | job 6891106410 has completed (purged errors)
[2025-11-27 15:18:13] 2025-11-27 20:17:20,480 | INFO     | overall cleanup function is called
[2025-11-27 15:18:13] 2025-11-27 20:17:21,496 | INFO     | --- collectZombieJob: --- 10, [768639]
[2025-11-27 15:18:13] 2025-11-27 20:17:21,496 | INFO     | zombie collector waiting for pid 768639
[2025-11-27 15:18:13] 2025-11-27 20:17:21,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:18:13] 2025-11-27 20:17:21,496 | INFO     | collected zombie processes
[2025-11-27 15:18:13] 2025-11-27 20:17:21,496 | INFO     | will attempt to kill all subprocesses of pid=768639
[2025-11-27 15:18:13] 2025-11-27 20:17:23,965 | INFO     | PID=755963 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:18:13] 2025-11-27 20:17:23,966 | INFO     | .. there are 37 such processes running
[2025-11-27 15:18:13] 2025-11-27 20:17:24,003 | INFO     | process IDs to be killed: [768639] (in reverse order)
[2025-11-27 15:18:13] 2025-11-27 20:17:24,181 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:18:13] 2025-11-27 20:17:24,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:18:13] 2025-11-27 20:17:24,200 | INFO     | did not find any defunct processes belonging to 768639
[2025-11-27 15:18:13] 2025-11-27 20:17:24,219 | INFO     | did not find any defunct processes belonging to 768639
[2025-11-27 15:18:13] 2025-11-27 20:17:24,220 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:18:13] 2025-11-27 20:17:24,220 | INFO     | ready for new job
[2025-11-27 15:18:13] 2025-11-27 20:17:24,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:18:13] 2025-11-27 20:17:24,239 | INFO     | ***************************************
[2025-11-27 15:18:13] 2025-11-27 20:17:24,239 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:18:13] 2025-11-27 20:17:24,239 | INFO     | ***************************************
[2025-11-27 15:18:13] 2025-11-27 20:17:24,239 | INFO     | 
[2025-11-27 15:18:13] 2025-11-27 20:17:24,309 | INFO     | architecture information:
[2025-11-27 15:18:13] 2025-11-27 20:17:24,311 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:18:13] 2025-11-27 20:17:24,403 | INFO     | cat /etc/os-release:
[2025-11-27 15:18:13] NAME="CentOS Linux"
[2025-11-27 15:18:13] VERSION="7 (Core)"
[2025-11-27 15:18:13] ID="centos"
[2025-11-27 15:18:13] ID_LIKE="rhel fedora"
[2025-11-27 15:18:13] VERSION_ID="7"
[2025-11-27 15:18:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:18:13] ANSI_COLOR="0;31"
[2025-11-27 15:18:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:18:13] HOME_URL="https://www.centos.org/"
[2025-11-27 15:18:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:18:13] 
[2025-11-27 15:18:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:18:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:18:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:18:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:18:13] 
[2025-11-27 15:18:13] 2025-11-27 20:17:24,404 | INFO     | ***************************************
[2025-11-27 15:18:13] 2025-11-27 20:17:24,910 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 15:18:13] 2025-11-27 20:17:25,000 | INFO     | sufficient remaining disk space (121730236416 B)
[2025-11-27 15:18:13] 2025-11-27 20:17:25,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:18:13] 2025-11-27 20:17:25,013 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:18:13] 2025-11-27 20:17:25,013 | INFO     | update_server=False
[2025-11-27 15:18:13] 2025-11-27 20:17:25,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:18:13] 2025-11-27 20:17:25,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:18:13] 2025-11-27 20:17:25,082 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:18:13] 2025-11-27 20:17:25,084 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:18:13] 2025-11-27 20:17:25,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:18:13] 2025-11-27 20:17:25,085 | INFO     | will abort loop
[2025-11-27 15:18:13] 2025-11-27 20:17:25,401 | INFO     | all job control threads have been joined
[2025-11-27 15:18:13] 2025-11-27 20:17:25,441 | INFO     | all payload control threads have been joined
[2025-11-27 15:18:13] 2025-11-27 20:17:25,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:18:13] 2025-11-27 20:17:25,927 | INFO     | all data control threads have been joined
[2025-11-27 15:18:13] 2025-11-27 20:17:26,026 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,090 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,120 | INFO     | [job] validate thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,121 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,177 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,202 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,203 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,325 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,407 | INFO     | [job] control thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,427 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,447 | INFO     | [payload] control thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,483 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:26,945 | INFO     | [data] control thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:27,023 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:27,434 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:28,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:18:13] 2025-11-27 20:17:32,465 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:18:13] 2025-11-27 20:17:57,904 | INFO     | PID=755963 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:18:13] 2025-11-27 20:17:57,904 | INFO     | .. there are 37 such processes running
[2025-11-27 15:18:13] 2025-11-27 20:17:57,909 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:18:13] 2025-11-27 20:17:57,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:18:13] 2025-11-27 20:17:57,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:18:13] 2025-11-27 20:18:05,852 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:18:13] 2025-11-27 20:18:06,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646511519552)>', '<ExcThread(monitor, started 140645716965120)>']
[2025-11-27 15:18:13] 2025-11-27 20:18:06,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:18:13] 2025-11-27 20:18:06,997 | INFO     | [monitor] control thread has ended
[2025-11-27 15:18:13] 2025-11-27 20:18:11,953 | INFO     | all workflow threads have been joined
[2025-11-27 15:18:13] 2025-11-27 20:18:11,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:18:13] 2025-11-27 20:18:11,956 | INFO     | traces error code: 0
[2025-11-27 15:18:13] 2025-11-27 20:18:11,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:18:13] 2025-11-27 20:18:12,421 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:18:13] 2025-11-27 20:18:12,443 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:18:13] 2025-11-27 20:18:12,452 [wrapper] pilotpid: 755963
[2025-11-27 15:18:13] 2025-11-27 20:18:12,459 [wrapper] Pilot exit status: 0
[2025-11-27 15:18:13] 2025-11-27 20:18:12,484 [wrapper] pandaids: 6891106410
[2025-11-27 15:18:13] 2025-11-27 20:18:12,576 [wrapper] cleanup supervisor_pilot 1586950 755964
[2025-11-27 15:18:13] 2025-11-27 20:18:12,580 [wrapper] Test setup, not cleaning
[2025-11-27 15:18:13] 2025-11-27 20:18:12,584 [wrapper] apfmon messages muted
[2025-11-27 15:18:13] 2025-11-27 20:18:12,590 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:18:13] 2025-11-27 20:18:12,593 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:18:13]  *** Error codes and diagnostics ***
[2025-11-27 15:18:13]     "exeErrorCode": 0,
[2025-11-27 15:18:13]     "exeErrorDiag": "",
[2025-11-27 15:18:13]     "pilotErrorCode": 0,
[2025-11-27 15:18:13]     "pilotErrorDiag": "",
[2025-11-27 15:18:13]  *** Listing of results directory ***
[2025-11-27 15:18:13] total 1321988
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 15:18:13] -rwx------. 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:18:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:59 run_atlas
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:59 job.xml
[2025-11-27 15:18:13] -rw-r--r--. 2 boincer umatlas 408887880 Nov 26 21:59 EVNT.47483658._000260.pool.root.1
[2025-11-27 15:18:13] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 21:59 start_atlas.sh
[2025-11-27 15:18:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:59 shared
[2025-11-27 15:18:13] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 21:59 input.tar.gz
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:59 boinc_lockfile
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 21:59 pandaJob.out
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas    991554 Nov 26 21:59 agis_schedconf.cvmfs.json
[2025-11-27 15:18:13] drwx------. 5 boincer umatlas      4096 Nov 26 21:59 pilot3
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:04 boinc_task_state.xml
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 15:13 init_data.xml
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas 920300268 Nov 27 15:15 HITS.47483661._002300.pool.root.1
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas      1063 Nov 27 15:16 memory_monitor_summary.json
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas   2169186 Nov 27 15:17 log.47483661._002300.job.log.tgz.1
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas      8624 Nov 27 15:17 heartbeat.json
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas        95 Nov 27 15:17 pilot_heartbeat.json
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:18 boinc_mmap_file
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:18 wrapper_checkpoint.txt
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas      5010 Nov 27 15:18 pilotlog.txt
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas   8137409 Nov 27 15:18 log.47483661._002300.job.log.1
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas       353 Nov 27 15:18 output.list
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:18 runtime_log
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas  10321920 Nov 27 15:18 result.tar.gz
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas       665 Nov 27 15:18 zBRODmPsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfQKODmIsO9Vn.diag
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas      8704 Nov 27 15:18 runtime_log.err
[2025-11-27 15:18:13] -rw-r--r--. 1 boincer umatlas     21305 Nov 27 15:18 stderr.txt
[2025-11-27 15:18:13] HITS file was successfully produced:
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas 920300268 Nov 27 15:15 shared/HITS.pool.root.1
[2025-11-27 15:18:13]  *** Contents of shared directory: ***
[2025-11-27 15:18:13] total 1308724
[2025-11-27 15:18:13] -rw-r--r--. 2 boincer umatlas 408887880 Nov 26 21:59 ATLAS.root_0
[2025-11-27 15:18:13] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 21:59 start_atlas.sh
[2025-11-27 15:18:13] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 21:59 input.tar.gz
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas 920300268 Nov 27 15:15 HITS.pool.root.1
[2025-11-27 15:18:13] -rw-------. 1 boincer umatlas  10321920 Nov 27 15:18 result.tar.gz
15:18:14 (749593): run_atlas exited; CPU time 202018.718619
15:18:14 (749593): called boinc_finish(0)

</stderr_txt>
]]>

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