Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:55:04 (1247757): wrapper (7.7.26015): starting
12:55:04 (1247757): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:55:04] Arguments: --nthreads 8
[2025-11-26 12:55:04] Threads: 8
[2025-11-26 12:55:04] Checking for CVMFS
[2025-11-26 12:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:55:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:55:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:55:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:55:04] 2.13.2.0 7153 36162 255580 153330 3 906 39457972 40960001 32600 16776704 0 139854385 99.571 145690007 33482 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 12:55:04] CVMFS is ok
[2025-11-26 12:55:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:55:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:55:04] Further information can be found at the LHC@home message board.
[2025-11-26 12:55:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:55:04] Checking for apptainer binary...
[2025-11-26 12:55:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:55:04] Running /usr/bin/apptainer --version
[2025-11-26 12:55:04] apptainer version 1.4.4-1.el9
[2025-11-26 12:55:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:55:04] c-212-15.aglt2.org
[2025-11-26 12:55:04] apptainer works
[2025-11-26 12:55:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:55:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:55:04] Starting ATLAS job with PandaID=6891106802
[2025-11-26 12:55:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:00:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:00:30] 2025-11-27 03:59:53,443 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:00:30] 2025-11-27 03:59:53,445 | INFO     | sum of square deviations: 64991228938.86351
[2025-11-26 23:00:30] 2025-11-27 03:59:53,456 | INFO     | sum of deviations: 26995547639.31839
[2025-11-26 23:00:30] 2025-11-27 03:59:53,456 | INFO     | mean x: 1764197833.6818182
[2025-11-26 23:00:30] 2025-11-27 03:59:53,456 | INFO     | mean y: 2872568.335016835
[2025-11-26 23:00:30] 2025-11-27 03:59:53,456 | INFO     | intersect: -729926109.9164833
[2025-11-26 23:00:30] 2025-11-27 03:59:53,461 | INFO     | chi2: 11.006396384002628
[2025-11-26 23:00:30] 2025-11-27 03:59:53,461 | INFO     | sum of square deviations: 63364091599.32123
[2025-11-26 23:00:30] 2025-11-27 03:59:53,481 | INFO     | sum of deviations: 222535019841.45514
[2025-11-26 23:00:30] 2025-11-27 03:59:53,481 | INFO     | mean x: 1764197681.1918507
[2025-11-26 23:00:30] 2025-11-27 03:59:53,481 | INFO     | mean y: 2890902.2614601017
[2025-11-26 23:00:30] 2025-11-27 03:59:53,482 | INFO     | intersect: -6192980546.047651
[2025-11-26 23:00:30] 2025-11-27 03:59:53,482 | INFO     | chi2: 7.813924340248701
[2025-11-26 23:00:30] 2025-11-27 03:59:53,482 | INFO     | current chi2=7.813924340248701 (change=29.005606670627103 %)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,483 | INFO     | sum of square deviations: 61764350122.15765
[2025-11-26 23:00:30] 2025-11-27 03:59:53,516 | INFO     | sum of deviations: 429401707469.4517
[2025-11-26 23:00:30] 2025-11-27 03:59:53,516 | INFO     | mean x: 1764197528.7020547
[2025-11-26 23:00:30] 2025-11-27 03:59:53,517 | INFO     | mean y: 2910618.6232876712
[2025-11-26 23:00:30] 2025-11-27 03:59:53,517 | INFO     | intersect: -12262246055.732819
[2025-11-26 23:00:30] 2025-11-27 03:59:53,517 | INFO     | chi2: 4.397078188420341
[2025-11-26 23:00:30] 2025-11-27 03:59:53,517 | INFO     | current chi2=4.397078188420341 (change=43.727658511211146 %)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,518 | INFO     | sum of square deviations: 60191771944.87031
[2025-11-26 23:00:30] 2025-11-27 03:59:53,553 | INFO     | sum of deviations: 565683862422.7722
[2025-11-26 23:00:30] 2025-11-27 03:59:53,554 | INFO     | mean x: 1764197376.2124352
[2025-11-26 23:00:30] 2025-11-27 03:59:53,554 | INFO     | mean y: 2923813.5872193435
[2025-11-26 23:00:30] 2025-11-27 03:59:53,554 | INFO     | intersect: -16577049721.101538
[2025-11-26 23:00:30] 2025-11-27 03:59:53,554 | INFO     | chi2: 2.6862413169310138
[2025-11-26 23:00:30] 2025-11-27 03:59:53,555 | INFO     | current chi2=2.6862413169310138 (change=38.90849328071532 %)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,555 | INFO     | sum of square deviations: 58646054113.84158
[2025-11-26 23:00:30] 2025-11-27 03:59:53,587 | INFO     | sum of deviations: 640971116796.1459
[2025-11-26 23:00:30] 2025-11-27 03:59:53,587 | INFO     | mean x: 1764197223.7195122
[2025-11-26 23:00:30] 2025-11-27 03:59:53,587 | INFO     | mean y: 2931231.094076655
[2025-11-26 23:00:30] 2025-11-27 03:59:53,587 | INFO     | intersect: -19278834299.815964
[2025-11-26 23:00:30] 2025-11-27 03:59:53,588 | INFO     | chi2: 2.108513949570487
[2025-11-26 23:00:30] 2025-11-27 03:59:53,588 | INFO     | current chi2=2.108513949570487 (change=21.506904972356345 %)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,588 | INFO     | right removable region: 573
[2025-11-26 23:00:30] 2025-11-27 03:59:53,596 | INFO     | sum of square deviations: 63363663379.32127
[2025-11-26 23:00:30] 2025-11-27 03:59:53,614 | INFO     | sum of deviations: -112936821670.77936
[2025-11-26 23:00:30] 2025-11-27 03:59:53,628 | INFO     | mean x: 1764197986.1918507
[2025-11-26 23:00:30] 2025-11-27 03:59:53,628 | INFO     | mean y: 2885641.962648557
[2025-11-26 23:00:30] 2025-11-27 03:59:53,628 | INFO     | intersect: 3147320523.603662
[2025-11-26 23:00:30] 2025-11-27 03:59:53,629 | INFO     | chi2: 9.07214333104033
[2025-11-26 23:00:30] 2025-11-27 03:59:53,629 | INFO     | current chi2=9.07214333104033 (change=17.573899625981667 %)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,629 | INFO     | left removable region: 10
[2025-11-26 23:00:30] 2025-11-27 03:59:53,629 | INFO     | sum of square deviations: 55338563376.518585
[2025-11-26 23:00:30] 2025-11-27 03:59:53,661 | INFO     | sum of deviations: 478512574885.5082
[2025-11-26 23:00:30] 2025-11-27 03:59:53,661 | INFO     | mean x: 1764197498.232682
[2025-11-26 23:00:30] 2025-11-27 03:59:53,667 | INFO     | mean y: 2948310.3854351686
[2025-11-26 23:00:30] 2025-11-27 03:59:53,667 | INFO     | intersect: -15252068010.549665
[2025-11-26 23:00:30] 2025-11-27 03:59:53,668 | INFO     | chi2: 0.07104848369489145
[2025-11-26 23:00:30] 2025-11-27 03:59:53,668 | INFO     | current memory leak: 8.65 B/s (using 563 data points, chi2=0.07)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,668 | INFO     | could have reported an average CPU frequency of 3231 MHz (23 samples)
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | ..............................
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . Timing measurements:
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . get job = 0 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . initial setup = 2 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . payload setup = 7 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . stage-in = 0 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . payload execution = 36231 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . stage-out = 5 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | . log creation = 1 s
[2025-11-26 23:00:30] 2025-11-27 03:59:53,669 | INFO     | ..............................
[2025-11-26 23:00:30] 2025-11-27 03:59:54,012 | INFO     | 
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | job summary report
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | --------------------------------------------------
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | PanDA job id: 6891106802
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | task id: 47483661
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | errors: (none)
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | pilot state: finished 
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | transexitcode: 0
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | exeerrorcode: 0
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | exeerrordiag: 
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | exitcode: 0
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | exitmsg: OK
[2025-11-26 23:00:30] 2025-11-27 03:59:54,013 | INFO     | cpuconsumptiontime: 185497 s
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | nevents: 1000
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | neventsw: 0
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | pid: 1278681
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | pgrp: 1278681
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | corecount: 8
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | event service: False
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | sizes: {0: 2283476, 1: 2284332, 6: 2284594, 12: 2284622, 36243: 2327351, 36250: 2336345, 36251: 2336529, 36261: 2336775}
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | --------------------------------------------------
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | 
[2025-11-26 23:00:30] 2025-11-27 03:59:54,014 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 23:00:30] 2025-11-27 03:59:54,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,039 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:00:30] 2025-11-27 03:59:54,040 | INFO     | job 6891106802 has completed (purged errors)
[2025-11-26 23:00:30] 2025-11-27 03:59:54,040 | INFO     | overall cleanup function is called
[2025-11-26 23:00:30] 2025-11-27 03:59:55,056 | INFO     | --- collectZombieJob: --- 10, [1278681]
[2025-11-26 23:00:30] 2025-11-27 03:59:55,056 | INFO     | zombie collector waiting for pid 1278681
[2025-11-26 23:00:30] 2025-11-27 03:59:55,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:00:30] 2025-11-27 03:59:55,056 | INFO     | collected zombie processes
[2025-11-26 23:00:30] 2025-11-27 03:59:55,056 | INFO     | will attempt to kill all subprocesses of pid=1278681
[2025-11-26 23:00:30] 2025-11-27 03:59:55,900 | INFO     | process IDs to be killed: [1278681] (in reverse order)
[2025-11-26 23:00:30] 2025-11-27 03:59:56,117 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:00:30] 2025-11-27 03:59:56,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:00:30] 2025-11-27 03:59:56,145 | INFO     | did not find any defunct processes belonging to 1278681
[2025-11-26 23:00:30] 2025-11-27 03:59:56,183 | INFO     | did not find any defunct processes belonging to 1278681
[2025-11-26 23:00:30] 2025-11-27 03:59:56,185 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:00:30] 2025-11-27 03:59:56,185 | INFO     | ready for new job
[2025-11-26 23:00:30] 2025-11-27 03:59:56,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:00:30] 2025-11-27 03:59:56,208 | INFO     | ***************************************
[2025-11-26 23:00:30] 2025-11-27 03:59:56,208 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:00:30] 2025-11-27 03:59:56,208 | INFO     | ***************************************
[2025-11-26 23:00:30] 2025-11-27 03:59:56,208 | INFO     | 
[2025-11-26 23:00:30] 2025-11-27 03:59:56,239 | INFO     | architecture information:
[2025-11-26 23:00:30] 2025-11-27 03:59:56,264 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:00:30] 2025-11-27 03:59:56,293 | INFO     | cat /etc/os-release:
[2025-11-26 23:00:30] NAME="CentOS Linux"
[2025-11-26 23:00:30] VERSION="7 (Core)"
[2025-11-26 23:00:30] ID="centos"
[2025-11-26 23:00:30] ID_LIKE="rhel fedora"
[2025-11-26 23:00:30] VERSION_ID="7"
[2025-11-26 23:00:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:00:30] ANSI_COLOR="0;31"
[2025-11-26 23:00:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:00:30] HOME_URL="https://www.centos.org/"
[2025-11-26 23:00:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:00:30] 
[2025-11-26 23:00:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:00:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:00:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:00:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:00:30] 
[2025-11-26 23:00:30] 2025-11-27 03:59:56,294 | INFO     | ***************************************
[2025-11-26 23:00:30] 2025-11-27 03:59:56,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 23:00:30] 2025-11-27 03:59:56,905 | INFO     | sufficient remaining disk space (118002548736 B)
[2025-11-26 23:00:30] 2025-11-27 03:59:56,906 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:00:30] 2025-11-27 03:59:56,906 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:00:30] 2025-11-27 03:59:56,906 | INFO     | update_server=False
[2025-11-26 23:00:30] 2025-11-27 03:59:56,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:00:30] 2025-11-27 03:59:57,165 | INFO     | all payload control threads have been joined
[2025-11-26 23:00:30] 2025-11-27 03:59:57,260 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 23:00:30] 2025-11-27 03:59:57,260 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 23:00:30] 2025-11-27 03:59:57,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:00:30] 2025-11-27 03:59:57,260 | INFO     | will abort loop
[2025-11-26 23:00:30] 2025-11-27 03:59:57,905 | INFO     | all data control threads have been joined
[2025-11-26 23:00:30] 2025-11-27 03:59:57,914 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:57,982 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,003 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,003 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,171 | INFO     | [payload] control thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,260 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:00:30] 2025-11-27 03:59:58,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,266 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,365 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,441 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,441 | INFO     | [job] validate thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,456 | INFO     | all job control threads have been joined
[2025-11-26 23:00:30] 2025-11-27 03:59:58,911 | INFO     | [data] control thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:58,983 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:00:30] 2025-11-27 03:59:59,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:00:30] 2025-11-27 03:59:59,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:00:30] 2025-11-27 03:59:59,461 | INFO     | [job] control thread has finished
[2025-11-26 23:00:30] 2025-11-27 04:00:00,056 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:00:30] 2025-11-27 04:00:00,278 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:00:30] 2025-11-27 04:00:03,104 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:00:30] 2025-11-27 04:00:18,638 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:00:30] 2025-11-27 04:00:20,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408689235776)>', '<ExcThread(monitor, started 140407975438080)>']
[2025-11-26 23:00:30] 2025-11-27 04:00:25,580 | INFO     | all workflow threads have been joined
[2025-11-26 23:00:30] 2025-11-27 04:00:25,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:00:30] 2025-11-27 04:00:25,580 | INFO     | traces error code: 0
[2025-11-26 23:00:30] 2025-11-27 04:00:25,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:00:30] 2025-11-27 04:00:26,123 | INFO     | PID=1254713 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:00:30] 2025-11-27 04:00:26,123 | INFO     | .. there are 51 such processes running
[2025-11-26 23:00:30] 2025-11-27 04:00:26,127 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:00:30] 2025-11-27 04:00:26,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:00:30] 2025-11-27 04:00:26,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:00:30] 2025-11-27 04:00:26,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:00:30] 2025-11-27 04:00:26,127 | INFO     | [monitor] control thread has ended
[2025-11-26 23:00:30] 2025-11-27 04:00:26,434 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:00:30] 2025-11-27 04:00:26,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:00:30] 2025-11-27 04:00:26,444 [wrapper] pilotpid: 1254713
[2025-11-26 23:00:30] 2025-11-27 04:00:26,449 [wrapper] Pilot exit status: 0
[2025-11-26 23:00:30] 2025-11-27 04:00:26,471 [wrapper] pandaids: 6891106802
[2025-11-26 23:00:30] 2025-11-27 04:00:26,593 [wrapper] cleanup supervisor_pilot  363160 1254714
[2025-11-26 23:00:30] 2025-11-27 04:00:26,598 [wrapper] Test setup, not cleaning
[2025-11-26 23:00:30] 2025-11-27 04:00:26,621 [wrapper] apfmon messages muted
[2025-11-26 23:00:30] 2025-11-27 04:00:26,645 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:00:30] 2025-11-27 04:00:26,668 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:00:31]  *** Error codes and diagnostics ***
[2025-11-26 23:00:31]     "exeErrorCode": 0,
[2025-11-26 23:00:31]     "exeErrorDiag": "",
[2025-11-26 23:00:31]     "pilotErrorCode": 0,
[2025-11-26 23:00:31]     "pilotErrorDiag": "",
[2025-11-26 23:00:31]  *** Listing of results directory ***
[2025-11-26 23:00:31] total 1318024
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-26 23:00:31] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas       100 Nov 26 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:00:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 12:55 run_atlas
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas       105 Nov 26 12:55 job.xml
[2025-11-26 23:00:31] -rw-r--r--. 2 boincer umatlas 410074213 Nov 26 12:55 EVNT.47483658._000278.pool.root.1
[2025-11-26 23:00:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 12:55 start_atlas.sh
[2025-11-26 23:00:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 12:55 shared
[2025-11-26 23:00:31] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 12:55 input.tar.gz
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas         0 Nov 26 12:55 boinc_lockfile
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 12:55 pandaJob.out
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas    991530 Nov 26 12:55 agis_schedconf.cvmfs.json
[2025-11-26 23:00:31] drwx------. 5 boincer umatlas      4096 Nov 26 12:55 pilot3
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:37 boinc_task_state.xml
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas 922080162 Nov 26 22:58 HITS.47483661._002480.pool.root.1
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas        95 Nov 26 22:59 pilot_heartbeat.json
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas      1063 Nov 26 22:59 memory_monitor_summary.json
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:59 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas   1859975 Nov 26 22:59 log.47483661._002480.job.log.tgz.1
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas      8613 Nov 26 22:59 heartbeat.json
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas       823 Nov 26 23:00 pilotlog.txt
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas   4933734 Nov 26 23:00 log.47483661._002480.job.log.1
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas       353 Nov 26 23:00 output.list
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:00 runtime_log
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas   6809600 Nov 26 23:00 result.tar.gz
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas      8704 Nov 26 23:00 runtime_log.err
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas       664 Nov 26 23:00 OD4MDmmtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXSKODmeU5Olm.diag
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas      6950 Nov 26 23:00 init_data.xml
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:00 boinc_mmap_file
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:00 wrapper_checkpoint.txt
[2025-11-26 23:00:31] -rw-r--r--. 1 boincer umatlas     21154 Nov 26 23:00 stderr.txt
[2025-11-26 23:00:31] HITS file was successfully produced:
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas 922080162 Nov 26 22:58 shared/HITS.pool.root.1
[2025-11-26 23:00:31]  *** Contents of shared directory: ***
[2025-11-26 23:00:31] total 1308192
[2025-11-26 23:00:31] -rw-r--r--. 2 boincer umatlas 410074213 Nov 26 12:55 ATLAS.root_0
[2025-11-26 23:00:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 12:55 start_atlas.sh
[2025-11-26 23:00:31] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 12:55 input.tar.gz
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas 922080162 Nov 26 22:58 HITS.pool.root.1
[2025-11-26 23:00:31] -rw-------. 1 boincer umatlas   6809600 Nov 26 23:00 result.tar.gz
23:00:32 (1247757): run_atlas exited; CPU time 185484.273539
23:00:32 (1247757): called boinc_finish(0)

</stderr_txt>
]]>

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