Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:59 (189012): wrapper (7.7.26015): starting
00:09:59 (189012): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:09:59] Arguments: --nthreads 9
[2025-11-26 00:09:59] Threads: 9
[2025-11-26 00:09:59] Checking for CVMFS
[2025-11-26 00:10:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:02] 2.13.2.0 9514 35290 470700 153309 1 551 20883663 40960001 26780 16776704 0 94762081 99.573 100678312 35589 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:10:02] CVMFS is ok
[2025-11-26 00:10:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:02] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:02] Checking for apptainer binary...
[2025-11-26 00:10:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:02] Running /usr/bin/apptainer --version
[2025-11-26 00:10:02] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:03] c-211-33-3.aglt2.org
[2025-11-26 00:10:03] apptainer works
[2025-11-26 00:10:03] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:10:03] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:10:03] Starting ATLAS job with PandaID=6891106041
[2025-11-26 00:10:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:14:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:14:55] 2025-11-27 22:13:37,850 | INFO     | monitor loop #8241: job 0:6891106041 is in state 'finished'
[2025-11-27 17:14:55] 2025-11-27 22:13:37,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:14:55] 2025-11-27 22:13:38,134 | INFO     | time since job start (147736s) is within the limit (172800.0s)
[2025-11-27 17:14:55] 2025-11-27 22:13:40,161 | INFO     | time since job start (147738s) is within the limit (172800.0s)
[2025-11-27 17:14:55] 2025-11-27 22:13:40,354 | INFO     | monitor loop #8242: job 0:6891106041 is in state 'finished'
[2025-11-27 17:14:55] 2025-11-27 22:13:40,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:14:55] 2025-11-27 22:13:42,891 | INFO     | monitor loop #8243: job 0:6891106041 is in state 'finished'
[2025-11-27 17:14:55] 2025-11-27 22:13:42,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:14:55] 2025-11-27 22:13:44,538 | INFO     | PID=197871 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 17:14:55] 2025-11-27 22:13:44,538 | INFO     | .. there are 26 such processes running
[2025-11-27 17:14:55] 2025-11-27 22:13:45,405 | INFO     | monitor loop #8244: job 0:6891106041 is in state 'finished'
[2025-11-27 17:14:55] 2025-11-27 22:13:45,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:14:55] 2025-11-27 22:13:45,538 | INFO     | time since job start (147743s) is within the limit (172800.0s)
[2025-11-27 17:14:55] 2025-11-27 22:13:45,916 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:14:55] 2025-11-27 22:13:45,944 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2602.7439895833336
[2025-11-27 17:14:55] 2025-11-27 22:13:45,980 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891106041/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:14:55] 2025-11-27 22:13:45,981 | INFO     | extracted standard info from prmon json
[2025-11-27 17:14:55] 2025-11-27 22:13:45,981 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:14:55] 2025-11-27 22:13:45,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:14:55] 2025-11-27 22:13:46,213 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:14:55] 2025-11-27 22:13:46,237 | INFO     | sum of square deviations: 4388947235149.1855
[2025-11-27 17:14:55] 2025-11-27 22:13:46,794 | INFO     | sum of deviations: 14620592709864.83
[2025-11-27 17:14:55] 2025-11-27 22:13:46,840 | INFO     | mean x: 1764207809.2513435
[2025-11-27 17:14:55] 2025-11-27 22:13:46,840 | INFO     | mean y: 3062589.046300124
[2025-11-27 17:14:55] 2025-11-27 22:13:46,840 | INFO     | intersect: -5873919396.076616
[2025-11-27 17:14:55] 2025-11-27 22:13:46,885 | INFO     | chi2: 32.28654307533926
[2025-11-27 17:14:55] 2025-11-27 22:13:46,888 | INFO     | sum of square deviations: 4361790108678.039
[2025-11-27 17:14:55] 2025-11-27 22:13:47,560 | INFO     | time since job start (147745s) is within the limit (172800.0s)
[2025-11-27 17:14:55] 2025-11-27 22:13:47,710 | INFO     | sum of deviations: 15584353376633.637
[2025-11-27 17:14:55] 2025-11-27 22:13:47,710 | INFO     | mean x: 1764207656.7618062
[2025-11-27 17:14:55] 2025-11-27 22:13:47,710 | INFO     | mean y: 3068000.0132560064
[2025-11-27 17:14:55] 2025-11-27 22:13:47,710 | INFO     | intersect: -6300315442.953833
[2025-11-27 17:14:55] 2025-11-27 22:13:47,768 | INFO     | chi2: 28.273069616115926
[2025-11-27 17:14:55] 2025-11-27 22:13:47,768 | INFO     | current chi2=28.273069616115926 (change=12.430793379948007 %)
[2025-11-27 17:14:55] 2025-11-27 22:13:47,768 | INFO     | right removable region: 2413
[2025-11-27 17:14:55] 2025-11-27 22:13:47,830 | INFO     | sum of square deviations: 4361782507153.5166
[2025-11-27 17:14:55] 2025-11-27 22:13:47,989 | INFO     | monitor loop #8245: job 0:6891106041 is in state 'finished'
[2025-11-27 17:14:55] 2025-11-27 22:13:47,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:14:55] 2025-11-27 22:13:49,029 | INFO     | sum of deviations: 13559123986538.49
[2025-11-27 17:14:55] 2025-11-27 22:13:49,030 | INFO     | mean x: 1764207961.7622204
[2025-11-27 17:14:55] 2025-11-27 22:13:49,030 | INFO     | mean y: 3068548.101905551
[2025-11-27 17:14:55] 2025-11-27 22:13:49,030 | INFO     | intersect: -5481183464.08362
[2025-11-27 17:14:55] 2025-11-27 22:13:49,062 | INFO     | chi2: 27.959187161364166
[2025-11-27 17:14:55] 2025-11-27 22:13:49,063 | INFO     | current chi2=27.959187161364166 (change=13.402970717172769 %)
[2025-11-27 17:14:55] 2025-11-27 22:13:49,063 | INFO     | left removable region: 10
[2025-11-27 17:14:55] 2025-11-27 22:13:49,070 | INFO     | sum of square deviations: 4302424159951.731
[2025-11-27 17:14:55] 2025-11-27 22:13:49,617 | INFO     | time since job start (147747s) is within the limit (172800.0s)
[2025-11-27 17:14:55] 2025-11-27 22:13:50,044 | INFO     | sum of deviations: 13757668052534.83
[2025-11-27 17:14:55] 2025-11-27 22:13:50,044 | INFO     | mean x: 1764207931.2850604
[2025-11-27 17:14:55] 2025-11-27 22:13:50,044 | INFO     | mean y: 3080140.949230129
[2025-11-27 17:14:55] 2025-11-27 22:13:50,044 | INFO     | intersect: -5638248140.951581
[2025-11-27 17:14:55] 2025-11-27 22:13:50,119 | INFO     | chi2: 20.144523698367372
[2025-11-27 17:14:55] 2025-11-27 22:13:50,120 | INFO     | current memory leak: 3.20 B/s (using 2403 data points, chi2=20.14)
[2025-11-27 17:14:55] 2025-11-27 22:13:50,122 | INFO     | could have reported an average CPU frequency of 2633 MHz (84 samples)
[2025-11-27 17:14:55] 2025-11-27 22:13:50,122 | INFO     | ..............................
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . Timing measurements:
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . get job = 2 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . initial setup = 9 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . payload setup = 54 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . stage-in = 0 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . payload execution = 147549 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . stage-out = 14 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | . log creation = 5 s
[2025-11-27 17:14:55] 2025-11-27 22:13:50,123 | INFO     | ..............................
[2025-11-27 17:14:55] 2025-11-27 22:13:51,039 | INFO     | 
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | job summary report
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | --------------------------------------------------
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | PanDA job id: 6891106041
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | task id: 47483661
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | errors: (none)
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | pilot state: finished 
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | transexitcode: 0
[2025-11-27 17:14:55] 2025-11-27 22:13:51,040 | INFO     | exeerrorcode: 0
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | exeerrordiag: 
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | exitcode: 0
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | exitmsg: OK
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | cpuconsumptiontime: 258904 s
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | nevents: 1000
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | neventsw: 0
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | pid: 215692
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | pgrp: 215692
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | corecount: 9
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | event service: False
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | sizes: {0: 2284077, 1: 2284161, 2: 2284161, 3: 2284332, 4: 2284360, 15: 2284388, 26: 2284544, 38: 2284862, 49: 2284862, 147607: 2375762, 147622: 2385092, 147664: 2
[2025-11-27 17:14:55] 2025-11-27 22:13:51,041 | INFO     | --------------------------------------------------
[2025-11-27 17:14:55] 2025-11-27 22:13:51,042 | INFO     | 
[2025-11-27 17:14:55] 2025-11-27 22:13:51,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 17:14:55] 2025-11-27 22:13:51,259 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,259 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,259 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,260 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:14:55] 2025-11-27 22:13:51,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,261 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:14:55] 2025-11-27 22:13:51,261 | INFO     | job 6891106041 has completed (purged errors)
[2025-11-27 17:14:55] 2025-11-27 22:13:51,261 | INFO     | overall cleanup function is called
[2025-11-27 17:14:55] 2025-11-27 22:13:52,337 | INFO     | --- collectZombieJob: --- 10, [215692]
[2025-11-27 17:14:55] 2025-11-27 22:13:52,338 | INFO     | zombie collector waiting for pid 215692
[2025-11-27 17:14:55] 2025-11-27 22:13:52,338 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:14:55] 2025-11-27 22:13:52,338 | INFO     | collected zombie processes
[2025-11-27 17:14:55] 2025-11-27 22:13:52,338 | INFO     | will attempt to kill all subprocesses of pid=215692
[2025-11-27 17:14:55] 2025-11-27 22:13:55,606 | INFO     | process IDs to be killed: [215692] (in reverse order)
[2025-11-27 17:14:55] 2025-11-27 22:13:55,892 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:14:55] 2025-11-27 22:13:55,893 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:14:55] 2025-11-27 22:13:55,932 | INFO     | did not find any defunct processes belonging to 215692
[2025-11-27 17:14:55] 2025-11-27 22:13:56,007 | INFO     | did not find any defunct processes belonging to 215692
[2025-11-27 17:14:55] 2025-11-27 22:13:56,047 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:14:55] 2025-11-27 22:13:56,047 | INFO     | ready for new job
[2025-11-27 17:14:55] 2025-11-27 22:13:56,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:14:55] 2025-11-27 22:13:56,071 | INFO     | ***************************************
[2025-11-27 17:14:55] 2025-11-27 22:13:56,072 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:14:55] 2025-11-27 22:13:56,072 | INFO     | ***************************************
[2025-11-27 17:14:55] 2025-11-27 22:13:56,072 | INFO     | 
[2025-11-27 17:14:55] 2025-11-27 22:13:56,082 | INFO     | architecture information:
[2025-11-27 17:14:55] 2025-11-27 22:13:56,091 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:14:55] 2025-11-27 22:13:56,182 | INFO     | cat /etc/os-release:
[2025-11-27 17:14:55] NAME="CentOS Linux"
[2025-11-27 17:14:55] VERSION="7 (Core)"
[2025-11-27 17:14:55] ID="centos"
[2025-11-27 17:14:55] ID_LIKE="rhel fedora"
[2025-11-27 17:14:55] VERSION_ID="7"
[2025-11-27 17:14:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:14:55] ANSI_COLOR="0;31"
[2025-11-27 17:14:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:14:55] HOME_URL="https://www.centos.org/"
[2025-11-27 17:14:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:14:55] 
[2025-11-27 17:14:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:14:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:14:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:14:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:14:55] 
[2025-11-27 17:14:55] 2025-11-27 22:13:56,182 | INFO     | ***************************************
[2025-11-27 17:14:55] 2025-11-27 22:13:56,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 17:14:55] 2025-11-27 22:13:56,802 | INFO     | sufficient remaining disk space (119930880000 B)
[2025-11-27 17:14:55] 2025-11-27 22:13:56,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:14:55] 2025-11-27 22:13:56,802 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:14:55] 2025-11-27 22:13:56,803 | INFO     | update_server=False
[2025-11-27 17:14:55] 2025-11-27 22:13:56,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:14:55] 2025-11-27 22:13:56,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:14:55] 2025-11-27 22:13:56,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:14:55] 2025-11-27 22:13:56,824 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:14:55] 2025-11-27 22:13:56,825 | INFO     | aborting loop
[2025-11-27 17:14:55] 2025-11-27 22:13:57,050 | INFO     | all job control threads have been joined
[2025-11-27 17:14:55] 2025-11-27 22:13:57,144 | INFO     | all payload control threads have been joined
[2025-11-27 17:14:55] 2025-11-27 22:13:57,809 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:57,809 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:57,855 | INFO     | all data control threads have been joined
[2025-11-27 17:14:55] 2025-11-27 22:13:57,856 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,073 | INFO     | [job] control thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,150 | INFO     | [payload] control thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:14:55] 2025-11-27 22:13:58,214 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,215 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,216 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,304 | INFO     | [job] validate thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,309 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,436 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,861 | INFO     | [data] control thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:58,950 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:13:59,291 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:14:00,182 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:14:00,823 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:14:55] 2025-11-27 22:14:28,454 | INFO     | PID=197871 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 17:14:55] 2025-11-27 22:14:28,468 | INFO     | .. there are 26 such processes running
[2025-11-27 17:14:55] 2025-11-27 22:14:28,469 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:14:55] 2025-11-27 22:14:28,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:14:55] 2025-11-27 22:14:28,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:14:55] 2025-11-27 22:14:45,538 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:14:55] 2025-11-27 22:14:47,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140087320258368)>', '<ExcThread(monitor, started 140086456870656)>']
[2025-11-27 17:14:55] 2025-11-27 22:14:47,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:14:55] 2025-11-27 22:14:47,646 | INFO     | [monitor] control thread has ended
[2025-11-27 17:14:55] 2025-11-27 22:14:52,568 | INFO     | all workflow threads have been joined
[2025-11-27 17:14:55] 2025-11-27 22:14:52,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:14:55] 2025-11-27 22:14:52,569 | INFO     | traces error code: 0
[2025-11-27 17:14:55] 2025-11-27 22:14:52,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:14:55] 2025-11-27 22:14:54,018 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:14:55] 2025-11-27 22:14:54,043 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:14:55] 2025-11-27 22:14:54,063 [wrapper] pilotpid: 197871
[2025-11-27 17:14:55] 2025-11-27 22:14:54,123 [wrapper] Pilot exit status: 0
[2025-11-27 17:14:55] 2025-11-27 22:14:54,208 [wrapper] pandaids: 6891106041
[2025-11-27 17:14:55] 2025-11-27 22:14:54,609 [wrapper] cleanup supervisor_pilot 3422441 197872
[2025-11-27 17:14:55] 2025-11-27 22:14:54,650 [wrapper] Test setup, not cleaning
[2025-11-27 17:14:55] 2025-11-27 22:14:54,671 [wrapper] apfmon messages muted
[2025-11-27 17:14:55] 2025-11-27 22:14:54,690 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:14:55] 2025-11-27 22:14:54,711 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:14:55]  *** Error codes and diagnostics ***
[2025-11-27 17:14:55]     "exeErrorCode": 0,
[2025-11-27 17:14:55]     "exeErrorDiag": "",
[2025-11-27 17:14:55]     "pilotErrorCode": 0,
[2025-11-27 17:14:55]     "pilotErrorDiag": "",
[2025-11-27 17:14:55]  *** Listing of results directory ***
[2025-11-27 17:14:55] total 1325964
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-27 17:14:55] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:14:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:09 run_atlas
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:09 job.xml
[2025-11-27 17:14:55] -rw-r--r--. 2 boincer umatlas 410071623 Nov 26 00:09 EVNT.47483658._000250.pool.root.1
[2025-11-27 17:14:55] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:09 input.tar.gz
[2025-11-27 17:14:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:09 start_atlas.sh
[2025-11-27 17:14:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:09 shared
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:09 boinc_lockfile
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:10 pandaJob.out
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-27 17:14:55] drwx------. 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:28 boinc_task_state.xml
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas 901438930 Nov 27 17:10 HITS.47483661._002192.pool.root.1
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 17:11 init_data.xml
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas      1062 Nov 27 17:12 memory_monitor_summary.json
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas   3256714 Nov 27 17:13 log.47483661._002192.job.log.tgz.1
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas      8629 Nov 27 17:13 heartbeat.json
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas        95 Nov 27 17:14 pilot_heartbeat.json
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:14 wrapper_checkpoint.txt
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas      4824 Nov 27 17:14 pilotlog.txt
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas  17921775 Nov 27 17:14 log.47483661._002192.job.log.1
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas       353 Nov 27 17:14 output.list
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:14 runtime_log
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas  21196800 Nov 27 17:14 result.tar.gz
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas       665 Nov 27 17:14 VfYKDmfrUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmo8qMDmUId9um.diag
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas      8715 Nov 27 17:14 runtime_log.err
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:14 boinc_mmap_file
[2025-11-27 17:14:55] -rw-r--r--. 1 boincer umatlas     21895 Nov 27 17:14 stderr.txt
[2025-11-27 17:14:55] HITS file was successfully produced:
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas 901438930 Nov 27 17:10 shared/HITS.pool.root.1
[2025-11-27 17:14:55]  *** Contents of shared directory: ***
[2025-11-27 17:14:55] total 1302080
[2025-11-27 17:14:55] -rw-r--r--. 2 boincer umatlas 410071623 Nov 26 00:09 ATLAS.root_0
[2025-11-27 17:14:55] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:09 input.tar.gz
[2025-11-27 17:14:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:09 start_atlas.sh
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas 901438930 Nov 27 17:10 HITS.pool.root.1
[2025-11-27 17:14:55] -rw-------. 1 boincer umatlas  21196800 Nov 27 17:14 result.tar.gz
17:14:57 (189012): run_atlas exited; CPU time 263827.993941
17:14:57 (189012): called boinc_finish(0)

</stderr_txt>
]]>

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