Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:15 (2217144): wrapper (7.7.26015): starting
00:05:15 (2217144): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:05:15] Arguments: --nthreads 9
[2025-11-26 00:05:15] Threads: 9
[2025-11-26 00:05:15] Checking for CVMFS
[2025-11-26 00:05:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:16] 2.13.2.0 6699 35394 233408 153309 2 286 34295656 40960000 21149 16776704 0 91863083 99.615 92157175 37458 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:05:16] CVMFS is ok
[2025-11-26 00:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:16] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:16] Checking for apptainer binary...
[2025-11-26 00:05:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:16] Running /usr/bin/apptainer --version
[2025-11-26 00:05:16] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:17] c-212-4.aglt2.org
[2025-11-26 00:05:17] apptainer works
[2025-11-26 00:05:17] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:05:17] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:05:17] Starting ATLAS job with PandaID=6896715542
[2025-11-26 00:05:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:05:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:05:44] 2025-11-27 14:05:10,404 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3029.731916666669
[2025-11-27 09:05:44] 2025-11-27 14:05:10,419 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896715542/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:05:44] 2025-11-27 14:05:10,420 | INFO     | extracted standard info from prmon json
[2025-11-27 09:05:44] 2025-11-27 14:05:10,420 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:05:44] 2025-11-27 14:05:10,420 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:05:44] 2025-11-27 14:05:10,446 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:05:44] 2025-11-27 14:05:10,448 | INFO     | sum of square deviations: 2284802827234.445
[2025-11-27 09:05:44] 2025-11-27 14:05:10,514 | INFO     | monitor loop #7101: job 0:6896715542 is in state 'finished'
[2025-11-27 09:05:44] 2025-11-27 14:05:10,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:05:44] 2025-11-27 14:05:10,527 | INFO     | sum of deviations: 11867551291079.049
[2025-11-27 09:05:44] 2025-11-27 14:05:10,527 | INFO     | mean x: 1764192933.0169578
[2025-11-27 09:05:44] 2025-11-27 14:05:10,527 | INFO     | mean y: 3056711.8771839673
[2025-11-27 09:05:44] 2025-11-27 14:05:10,527 | INFO     | intersect: -9160381756.587915
[2025-11-27 09:05:44] 2025-11-27 14:05:10,529 | INFO     | chi2: 7.488130999351648
[2025-11-27 09:05:44] 2025-11-27 14:05:10,530 | INFO     | sum of square deviations: 2267236240999.9385
[2025-11-27 09:05:44] 2025-11-27 14:05:10,604 | INFO     | sum of deviations: 12544623325429.488
[2025-11-27 09:05:44] 2025-11-27 14:05:10,605 | INFO     | mean x: 1764192780.5260174
[2025-11-27 09:05:44] 2025-11-27 14:05:10,605 | INFO     | mean y: 3062588.6244204016
[2025-11-27 09:05:44] 2025-11-27 14:05:10,605 | INFO     | intersect: -9758220115.369541
[2025-11-27 09:05:44] 2025-11-27 14:05:10,606 | INFO     | chi2: 4.329942882599828
[2025-11-27 09:05:44] 2025-11-27 14:05:10,606 | INFO     | current chi2=4.329942882599828 (change=42.175919692447536 %)
[2025-11-27 09:05:44] 2025-11-27 14:05:10,608 | INFO     | sum of square deviations: 2249759935527.613
[2025-11-27 09:05:44] 2025-11-27 14:05:10,707 | INFO     | sum of deviations: 12871687331631.816
[2025-11-27 09:05:44] 2025-11-27 14:05:10,708 | INFO     | mean x: 1764192628.035124
[2025-11-27 09:05:44] 2025-11-27 14:05:10,708 | INFO     | mean y: 3065441.6203512396
[2025-11-27 09:05:44] 2025-11-27 14:05:10,708 | INFO     | intersect: -10090516341.145481
[2025-11-27 09:05:44] 2025-11-27 14:05:10,709 | INFO     | chi2: 3.3958749436220645
[2025-11-27 09:05:44] 2025-11-27 14:05:10,709 | INFO     | current chi2=3.3958749436220645 (change=21.572292390538898 %)
[2025-11-27 09:05:44] 2025-11-27 14:05:10,709 | INFO     | right removable region: 1935
[2025-11-27 09:05:44] 2025-11-27 14:05:10,711 | INFO     | sum of square deviations: 2267232421558.09
[2025-11-27 09:05:44] 2025-11-27 14:05:10,869 | INFO     | sum of deviations: 11247788731500.516
[2025-11-27 09:05:44] 2025-11-27 14:05:10,869 | INFO     | mean x: 1764193085.524472
[2025-11-27 09:05:44] 2025-11-27 14:05:10,870 | INFO     | mean y: 3062088.535806285
[2025-11-27 09:05:44] 2025-11-27 14:05:10,870 | INFO     | intersect: -8749137694.279829
[2025-11-27 09:05:44] 2025-11-27 14:05:10,871 | INFO     | chi2: 5.0521996361233095
[2025-11-27 09:05:44] 2025-11-27 14:05:10,872 | INFO     | current chi2=5.0521996361233095 (change=32.530565550192044 %)
[2025-11-27 09:05:44] 2025-11-27 14:05:10,873 | INFO     | sum of square deviations: 2249754075707.857
[2025-11-27 09:05:44] 2025-11-27 14:05:10,989 | INFO     | sum of deviations: 11033670520403.691
[2025-11-27 09:05:44] 2025-11-27 14:05:10,989 | INFO     | mean x: 1764193238.024277
[2025-11-27 09:05:44] 2025-11-27 14:05:10,989 | INFO     | mean y: 3063956.708677686
[2025-11-27 09:05:44] 2025-11-27 14:05:10,990 | INFO     | intersect: -8649227034.945337
[2025-11-27 09:05:44] 2025-11-27 14:05:10,991 | INFO     | chi2: 4.939952980808754
[2025-11-27 09:05:44] 2025-11-27 14:05:10,991 | INFO     | current chi2=4.939952980808754 (change=2.221738319918911 %)
[2025-11-27 09:05:44] 2025-11-27 14:05:10,991 | INFO     | left removable region: 20
[2025-11-27 09:05:44] 2025-11-27 14:05:10,993 | INFO     | sum of square deviations: 2177332431094.5784
[2025-11-27 09:05:44] 2025-11-27 14:05:11,160 | INFO     | sum of deviations: 11681080066337.355
[2025-11-27 09:05:44] 2025-11-27 14:05:11,161 | INFO     | mean x: 1764193207.5336814
[2025-11-27 09:05:44] 2025-11-27 14:05:11,161 | INFO     | mean y: 3076482.552480418
[2025-11-27 09:05:44] 2025-11-27 14:05:11,161 | INFO     | intersect: -9461570171.945587
[2025-11-27 09:05:44] 2025-11-27 14:05:11,162 | INFO     | chi2: 0.6221535929251077
[2025-11-27 09:05:44] 2025-11-27 14:05:11,163 | INFO     | current memory leak: 5.36 B/s (using 1915 data points, chi2=0.62)
[2025-11-27 09:05:44] 2025-11-27 14:05:11,164 | INFO     | could have reported an average CPU frequency of 3086 MHz (69 samples)
[2025-11-27 09:05:44] 2025-11-27 14:05:11,164 | INFO     | ..............................
[2025-11-27 09:05:44] 2025-11-27 14:05:11,164 | INFO     | . Timing measurements:
[2025-11-27 09:05:44] 2025-11-27 14:05:11,164 | INFO     | . get job = 0 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | . initial setup = 4 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | . payload setup = 14 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | . stage-in = 0 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | . payload execution = 118697 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | . stage-out = 3 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | . log creation = 0 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,165 | INFO     | ..............................
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | 
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | job summary report
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | --------------------------------------------------
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | PanDA job id: 6896715542
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | task id: 47556161
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | errors: (none)
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | pilot state: finished 
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | transexitcode: 0
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | exeerrorcode: 0
[2025-11-27 09:05:44] 2025-11-27 14:05:11,267 | INFO     | exeerrordiag: 
[2025-11-27 09:05:44] 2025-11-27 14:05:11,268 | INFO     | exitcode: 0
[2025-11-27 09:05:44] 2025-11-27 14:05:11,268 | INFO     | exitmsg: OK
[2025-11-27 09:05:44] 2025-11-27 14:05:11,268 | INFO     | cpuconsumptiontime: 204835 s
[2025-11-27 09:05:44] 2025-11-27 14:05:11,268 | INFO     | nevents: 1000
[2025-11-27 09:05:44] 2025-11-27 14:05:11,275 | INFO     | neventsw: 0
[2025-11-27 09:05:44] 2025-11-27 14:05:11,275 | INFO     | pid: 2265829
[2025-11-27 09:05:44] 2025-11-27 14:05:11,275 | INFO     | pgrp: 2265829
[2025-11-27 09:05:44] 2025-11-27 14:05:11,275 | INFO     | corecount: 9
[2025-11-27 09:05:44] 2025-11-27 14:05:11,276 | INFO     | event service: False
[2025-11-27 09:05:44] 2025-11-27 14:05:11,276 | INFO     | sizes: {0: 2284042, 1: 2284241, 2: 2284241, 13: 2284269, 18: 2284587, 24: 2284615, 118715: 2365582, 118719: 2374604, 118722: 2374660, 118728: 2374906}
[2025-11-27 09:05:44] 2025-11-27 14:05:11,276 | INFO     | --------------------------------------------------
[2025-11-27 09:05:44] 2025-11-27 14:05:11,276 | INFO     | 
[2025-11-27 09:05:44] 2025-11-27 14:05:11,276 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 09:05:44] 2025-11-27 14:05:11,305 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,305 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,305 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,305 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,305 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | job 6896715542 has completed (purged errors)
[2025-11-27 09:05:44] 2025-11-27 14:05:11,307 | INFO     | overall cleanup function is called
[2025-11-27 09:05:44] 2025-11-27 14:05:11,799 | INFO     | PID=2229086 has CPU usage=16.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 09:05:44] 2025-11-27 14:05:11,799 | INFO     | .. there are 25 such processes running
[2025-11-27 09:05:44] 2025-11-27 14:05:12,344 | INFO     | --- collectZombieJob: --- 10, [2265829]
[2025-11-27 09:05:44] 2025-11-27 14:05:12,344 | INFO     | zombie collector waiting for pid 2265829
[2025-11-27 09:05:44] 2025-11-27 14:05:12,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:05:44] 2025-11-27 14:05:12,344 | INFO     | collected zombie processes
[2025-11-27 09:05:44] 2025-11-27 14:05:12,345 | INFO     | will attempt to kill all subprocesses of pid=2265829
[2025-11-27 09:05:44] 2025-11-27 14:05:12,751 | INFO     | process IDs to be killed: [2265829] (in reverse order)
[2025-11-27 09:05:44] 2025-11-27 14:05:12,891 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:05:44] 2025-11-27 14:05:12,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:05:44] 2025-11-27 14:05:12,908 | INFO     | did not find any defunct processes belonging to 2265829
[2025-11-27 09:05:44] 2025-11-27 14:05:12,920 | INFO     | did not find any defunct processes belonging to 2265829
[2025-11-27 09:05:44] 2025-11-27 14:05:12,921 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:05:44] 2025-11-27 14:05:12,921 | INFO     | ready for new job
[2025-11-27 09:05:44] 2025-11-27 14:05:12,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:05:44] 2025-11-27 14:05:12,928 | INFO     | ***************************************
[2025-11-27 09:05:44] 2025-11-27 14:05:12,928 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:05:44] 2025-11-27 14:05:12,928 | INFO     | ***************************************
[2025-11-27 09:05:44] 2025-11-27 14:05:12,928 | INFO     | 
[2025-11-27 09:05:44] 2025-11-27 14:05:12,932 | INFO     | architecture information:
[2025-11-27 09:05:44] 2025-11-27 14:05:12,932 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:05:44] 2025-11-27 14:05:12,943 | INFO     | cat /etc/os-release:
[2025-11-27 09:05:44] NAME="CentOS Linux"
[2025-11-27 09:05:44] VERSION="7 (Core)"
[2025-11-27 09:05:44] ID="centos"
[2025-11-27 09:05:44] ID_LIKE="rhel fedora"
[2025-11-27 09:05:44] VERSION_ID="7"
[2025-11-27 09:05:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:05:44] ANSI_COLOR="0;31"
[2025-11-27 09:05:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:05:44] HOME_URL="https://www.centos.org/"
[2025-11-27 09:05:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:05:44] 
[2025-11-27 09:05:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:05:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:05:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:05:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:05:44] 
[2025-11-27 09:05:44] 2025-11-27 14:05:12,944 | INFO     | ***************************************
[2025-11-27 09:05:44] 2025-11-27 14:05:13,447 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 09:05:44] 2025-11-27 14:05:13,501 | INFO     | sufficient remaining disk space (120751915008 B)
[2025-11-27 09:05:44] 2025-11-27 14:05:13,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:05:44] 2025-11-27 14:05:13,501 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:05:44] 2025-11-27 14:05:13,501 | INFO     | update_server=False
[2025-11-27 09:05:44] 2025-11-27 14:05:13,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:05:44] 2025-11-27 14:05:13,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:05:44] 2025-11-27 14:05:14,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:05:44] 2025-11-27 14:05:14,040 | INFO     | aborting loop
[2025-11-27 09:05:44] 2025-11-27 14:05:14,501 | INFO     | all data control threads have been joined
[2025-11-27 09:05:44] 2025-11-27 14:05:14,502 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:14,551 | INFO     | all job control threads have been joined
[2025-11-27 09:05:44] 2025-11-27 14:05:14,856 | INFO     | all payload control threads have been joined
[2025-11-27 09:05:44] 2025-11-27 14:05:15,047 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,123 | INFO     | [job] validate thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,259 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,306 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:05:44] 2025-11-27 14:05:15,420 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,508 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,509 | INFO     | [data] control thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,557 | INFO     | [job] control thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,656 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,721 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,743 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,754 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:15,862 | INFO     | [payload] control thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:16,068 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:16,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:05:44] 2025-11-27 14:05:17,295 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:18,547 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:05:44] 2025-11-27 14:05:19,314 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:05:44] 2025-11-27 14:05:21,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003463386944)>', '<ExcThread(monitor, started 140002939873024)>']
[2025-11-27 09:05:44] 2025-11-27 14:05:26,075 | INFO     | all workflow threads have been joined
[2025-11-27 09:05:44] 2025-11-27 14:05:26,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:05:44] 2025-11-27 14:05:26,075 | INFO     | traces error code: 0
[2025-11-27 09:05:44] 2025-11-27 14:05:26,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:05:44] 2025-11-27 14:05:44,327 | INFO     | PID=2229086 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:05:44] 2025-11-27 14:05:44,328 | INFO     | .. there are 25 such processes running
[2025-11-27 09:05:44] 2025-11-27 14:05:44,328 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:05:44] 2025-11-27 14:05:44,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:05:44] 2025-11-27 14:05:44,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:05:44] 2025-11-27 14:05:44,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:05:44] 2025-11-27 14:05:44,329 | INFO     | [monitor] control thread has ended
[2025-11-27 09:05:44] 2025-11-27 14:05:44,449 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:05:44] 2025-11-27 14:05:44,454 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:05:44] 2025-11-27 14:05:44,480 [wrapper] pilotpid: 2229086
[2025-11-27 09:05:44] 2025-11-27 14:05:44,536 [wrapper] Pilot exit status: 0
[2025-11-27 09:05:44] 2025-11-27 14:05:44,562 [wrapper] pandaids: 6896715542
[2025-11-27 09:05:44] 2025-11-27 14:05:44,663 [wrapper] cleanup supervisor_pilot 1268382 2229087
[2025-11-27 09:05:44] 2025-11-27 14:05:44,667 [wrapper] Test setup, not cleaning
[2025-11-27 09:05:44] 2025-11-27 14:05:44,670 [wrapper] apfmon messages muted
[2025-11-27 09:05:44] 2025-11-27 14:05:44,673 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:05:44] 2025-11-27 14:05:44,675 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:05:44]  *** Error codes and diagnostics ***
[2025-11-27 09:05:44]     "exeErrorCode": 0,
[2025-11-27 09:05:44]     "exeErrorDiag": "",
[2025-11-27 09:05:44]     "pilotErrorCode": 0,
[2025-11-27 09:05:44]     "pilotErrorDiag": "",
[2025-11-27 09:05:44]  *** Listing of results directory ***
[2025-11-27 09:05:44] total 1335500
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:06 queuedata.json
[2025-11-27 09:05:44] -rwx------. 1 boincer umatlas     36292 Nov 25 02:10 runpilot2-wrapper.sh
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:05:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:05 run_atlas
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:05 job.xml
[2025-11-27 09:05:44] -rw-r--r--. 2 boincer umatlas 409136118 Nov 26 00:05 EVNT.47483658._002131.pool.root.1
[2025-11-27 09:05:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:05 start_atlas.sh
[2025-11-27 09:05:44] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-27 09:05:44] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:05 input.tar.gz
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:05 pandaJob.out
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas        57 Nov 26 00:05 setup.sh.local
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 09:05:44] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:49 boinc_task_state.xml
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 09:01 init_data.xml
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas 918391643 Nov 27 09:04 HITS.47556161._001145.pool.root.1
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas      1073 Nov 27 09:04 memory_monitor_summary.json
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas   2961715 Nov 27 09:05 log.47556161._001145.job.log.tgz.1
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas      8608 Nov 27 09:05 heartbeat.json
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas        95 Nov 27 09:05 pilot_heartbeat.json
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas       823 Nov 27 09:05 pilotlog.txt
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:05 boinc_mmap_file
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas  15088973 Nov 27 09:05 log.47556161._001145.job.log.1
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas       353 Nov 27 09:05 output.list
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:05 runtime_log
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas  18073600 Nov 27 09:05 result.tar.gz
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 09:05 runtime_log.err
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas       666 Nov 27 09:05 47JMDmVN2h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzNJKDmkWxJnm.diag
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:05 wrapper_checkpoint.txt
[2025-11-27 09:05:44] -rw-r--r--. 1 boincer umatlas     21478 Nov 27 09:05 stderr.txt
[2025-11-27 09:05:44] HITS file was successfully produced:
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas 918391643 Nov 27 09:04 shared/HITS.pool.root.1
[2025-11-27 09:05:44]  *** Contents of shared directory: ***
[2025-11-27 09:05:44] total 1314672
[2025-11-27 09:05:44] -rw-r--r--. 2 boincer umatlas 409136118 Nov 26 00:05 ATLAS.root_0
[2025-11-27 09:05:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:05 start_atlas.sh
[2025-11-27 09:05:44] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:05 input.tar.gz
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas 918391643 Nov 27 09:04 HITS.pool.root.1
[2025-11-27 09:05:44] -rw-------. 1 boincer umatlas  18073600 Nov 27 09:05 result.tar.gz
09:05:46 (2217144): run_atlas exited; CPU time 206875.735820
09:05:46 (2217144): called boinc_finish(0)

</stderr_txt>
]]>

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