Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:29:40 (4049096): wrapper (7.7.26015): starting
13:29:40 (4049096): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:29:40] Arguments: --nthreads 8
[2025-11-26 13:29:40] Threads: 8
[2025-11-26 13:29:40] Checking for CVMFS
[2025-11-26 13:29:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:29:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:29:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:29:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:29:44] 2.13.3.0 13693 30409 353592 153331 2 525 39910075 40960001 24994 16776704 0 85450456 99.603 90584843 37138 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:29:44] CVMFS is ok
[2025-11-26 13:29:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:29:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:29:44] Further information can be found at the LHC@home message board.
[2025-11-26 13:29:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:29:44] Checking for apptainer binary...
[2025-11-26 13:29:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:29:44] Running /usr/bin/apptainer --version
[2025-11-26 13:29:45] apptainer version 1.4.4-1.el9
[2025-11-26 13:29:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:29:46] c6-5-37-3.aglt2.org
[2025-11-26 13:29:46] apptainer works
[2025-11-26 13:29:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:29:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:29:46] Starting ATLAS job with PandaID=6891104814
[2025-11-26 13:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:40:07 (4049096): BOINC client no longer exists - exiting
00:40:07 (4049096): timer handler: client dead, exiting
00:49:58 (2182364): wrapper (7.7.26015): starting
00:49:58 (2182364): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:49:58] Arguments: --nthreads 8
[2025-11-27 00:49:58] Threads: 8
[2025-11-27 00:49:58] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:49:58] Checking for CVMFS
[2025-11-27 00:49:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:49:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:49:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:49:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:49:59] 2.13.3.0 13693 31089 340196 153349 3 190 27770948 40960001 23512 16776704 0 89077767 99.606 92821430 36916 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:49:59] CVMFS is ok
[2025-11-27 00:49:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:49:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:49:59] Further information can be found at the LHC@home message board.
[2025-11-27 00:49:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:49:59] Checking for apptainer binary...
[2025-11-27 00:49:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:49:59] Running /usr/bin/apptainer --version
[2025-11-27 00:49:59] apptainer version 1.4.4-1.el9
[2025-11-27 00:49:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:49:59] c6-5-37-3.aglt2.org
[2025-11-27 00:49:59] apptainer works
[2025-11-27 00:49:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:49:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:49:59] Starting ATLAS job with PandaID=6891104814
[2025-11-27 00:49:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:38:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:38:20] 2025-11-27 23:37:07,550 | INFO     | monitor loop #3552: job 0:6891104814 is in state 'finished'
[2025-11-27 18:38:20] 2025-11-27 23:37:07,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:38:20] 2025-11-27 23:37:07,569 | INFO     | sum of deviations: 2162509866953.016
[2025-11-27 18:38:20] 2025-11-27 23:37:07,570 | INFO     | mean x: 1764254614.4613917
[2025-11-27 18:38:20] 2025-11-27 23:37:07,570 | INFO     | mean y: 2953083.136320305
[2025-11-27 18:38:20] 2025-11-27 23:37:07,570 | INFO     | intersect: -10655720152.55644
[2025-11-27 18:38:20] 2025-11-27 23:37:07,659 | INFO     | chi2: 11.617588728389858
[2025-11-27 18:38:20] 2025-11-27 23:37:07,661 | INFO     | sum of square deviations: 352852472587.689
[2025-11-27 18:38:20] 2025-11-27 23:37:07,826 | INFO     | sum of deviations: 2532749256493.4473
[2025-11-27 18:38:20] 2025-11-27 23:37:07,826 | INFO     | mean x: 1764254461.9827585
[2025-11-27 18:38:20] 2025-11-27 23:37:07,826 | INFO     | mean y: 2964165.1915708813
[2025-11-27 18:38:20] 2025-11-27 23:37:07,826 | INFO     | intersect: -12660725404.793268
[2025-11-27 18:38:20] 2025-11-27 23:37:07,865 | INFO     | chi2: 8.144886218250575
[2025-11-27 18:38:20] 2025-11-27 23:37:07,865 | INFO     | current chi2=8.144886218250575 (change=29.89176662497144 %)
[2025-11-27 18:38:20] 2025-11-27 23:37:07,867 | INFO     | sum of square deviations: 347808513461.73834
[2025-11-27 18:38:20] 2025-11-27 23:37:08,095 | INFO     | sum of deviations: 2874336402287.56
[2025-11-27 18:38:20] 2025-11-27 23:37:08,096 | INFO     | mean x: 1764254309.5033686
[2025-11-27 18:38:20] 2025-11-27 23:37:08,096 | INFO     | mean y: 2974492.9836381134
[2025-11-27 18:38:20] 2025-11-27 23:37:08,096 | INFO     | intersect: -14577060751.77207
[2025-11-27 18:38:20] 2025-11-27 23:37:08,097 | INFO     | chi2: 5.22940931326427
[2025-11-27 18:38:20] 2025-11-27 23:37:08,097 | INFO     | current chi2=5.22940931326427 (change=35.795182730158686 %)
[2025-11-27 18:38:20] 2025-11-27 23:37:08,099 | INFO     | sum of square deviations: 342812881188.39514
[2025-11-27 18:38:20] 2025-11-27 23:37:08,298 | INFO     | sum of deviations: 3175591129307.0557
[2025-11-27 18:38:20] 2025-11-27 23:37:08,299 | INFO     | mean x: 1764254157.024178
[2025-11-27 18:38:20] 2025-11-27 23:37:08,299 | INFO     | mean y: 2983678.7978723403
[2025-11-27 18:38:20] 2025-11-27 23:37:08,299 | INFO     | intersect: -16339896528.81649
[2025-11-27 18:38:20] 2025-11-27 23:37:08,300 | INFO     | chi2: 2.6427560824762772
[2025-11-27 18:38:20] 2025-11-27 23:37:08,300 | INFO     | current chi2=2.6427560824762772 (change=49.46358328132796 %)
[2025-11-27 18:38:20] 2025-11-27 23:37:08,306 | INFO     | sum of square deviations: 337864900759.73334
[2025-11-27 18:38:20] 2025-11-27 23:37:08,341 | INFO     | sum of deviations: 3271702597413.9
[2025-11-27 18:38:20] 2025-11-27 23:37:08,342 | INFO     | mean x: 1764254004.5383868
[2025-11-27 18:38:20] 2025-11-27 23:37:08,342 | INFO     | mean y: 2986637.736637512
[2025-11-27 18:38:20] 2025-11-27 23:37:08,342 | INFO     | intersect: -17081103470.962912
[2025-11-27 18:38:20] 2025-11-27 23:37:08,343 | INFO     | chi2: 2.229595731019209
[2025-11-27 18:38:20] 2025-11-27 23:37:08,343 | INFO     | current chi2=2.229595731019209 (change=15.633692197197963 %)
[2025-11-27 18:38:20] 2025-11-27 23:37:08,343 | INFO     | right removable region: 1028
[2025-11-27 18:38:20] 2025-11-27 23:37:08,344 | INFO     | sum of square deviations: 352850128023.35254
[2025-11-27 18:38:20] 2025-11-27 23:37:08,383 | INFO     | sum of deviations: 1897602597080.4287
[2025-11-27 18:38:20] 2025-11-27 23:37:08,383 | INFO     | mean x: 1764254766.9750957
[2025-11-27 18:38:20] 2025-11-27 23:37:08,383 | INFO     | mean y: 2961001.6704980843
[2025-11-27 18:38:20] 2025-11-27 23:37:08,383 | INFO     | intersect: -9485074177.67879
[2025-11-27 18:38:20] 2025-11-27 23:37:08,385 | INFO     | chi2: 9.756460733415619
[2025-11-27 18:38:20] 2025-11-27 23:37:08,385 | INFO     | current chi2=9.756460733415619 (change=16.019916339663567 %)
[2025-11-27 18:38:20] 2025-11-27 23:37:08,385 | INFO     | left removable region: 10
[2025-11-27 18:38:20] 2025-11-27 23:37:08,390 | INFO     | sum of square deviations: 327145208365.73694
[2025-11-27 18:38:20] 2025-11-27 23:37:08,428 | INFO     | sum of deviations: 2909150277169.7754
[2025-11-27 18:38:20] 2025-11-27 23:37:08,428 | INFO     | mean x: 1764254279.0471513
[2025-11-27 18:38:20] 2025-11-27 23:37:08,429 | INFO     | mean y: 2997906.7337917485
[2025-11-27 18:38:20] 2025-11-27 23:37:08,429 | INFO     | intersect: -15685695351.307293
[2025-11-27 18:38:20] 2025-11-27 23:37:08,430 | INFO     | chi2: 0.23948763179239402
[2025-11-27 18:38:20] 2025-11-27 23:37:08,430 | INFO     | current memory leak: 8.89 B/s (using 1018 data points, chi2=0.24)
[2025-11-27 18:38:20] 2025-11-27 23:37:08,435 | INFO     | could have reported an average CPU frequency of 2947 MHz (38 samples)
[2025-11-27 18:38:20] 2025-11-27 23:37:08,435 | INFO     | ..............................
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . Timing measurements:
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . get job = 0 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . initial setup = 2 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . payload setup = 7 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . stage-in = 0 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . payload execution = 63940 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . stage-out = 8 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | . log creation = 2 s
[2025-11-27 18:38:20] 2025-11-27 23:37:08,436 | INFO     | ..............................
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | 
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | job summary report
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | --------------------------------------------------
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | PanDA job id: 6891104814
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | task id: 47483661
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | errors: (none)
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | pilot state: finished 
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | transexitcode: 0
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | exeerrorcode: 0
[2025-11-27 18:38:20] 2025-11-27 23:37:09,001 | INFO     | exeerrordiag: 
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | exitcode: 0
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | exitmsg: OK
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | cpuconsumptiontime: 223227 s
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | nevents: 1000
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | neventsw: 0
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | pid: 2214215
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | pgrp: 2214215
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | corecount: 8
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | event service: False
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | sizes: {0: 2284304, 5: 2284566, 11: 2284622, 63949: 2338914, 63950: 2338913, 63960: 2348147, 63998: 2348337}
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | --------------------------------------------------
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | 
[2025-11-27 18:38:20] 2025-11-27 23:37:09,002 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 18:38:20] 2025-11-27 23:37:09,069 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,069 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,069 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,069 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,070 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:38:20] 2025-11-27 23:37:09,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:38:20] 2025-11-27 23:37:09,071 | INFO     | job 6891104814 has completed (purged errors)
[2025-11-27 18:38:20] 2025-11-27 23:37:09,071 | INFO     | overall cleanup function is called
[2025-11-27 18:38:20] 2025-11-27 23:37:10,098 | INFO     | --- collectZombieJob: --- 10, [2214215]
[2025-11-27 18:38:20] 2025-11-27 23:37:10,098 | INFO     | zombie collector waiting for pid 2214215
[2025-11-27 18:38:20] 2025-11-27 23:37:10,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:38:20] 2025-11-27 23:37:10,099 | INFO     | collected zombie processes
[2025-11-27 18:38:20] 2025-11-27 23:37:10,099 | INFO     | will attempt to kill all subprocesses of pid=2214215
[2025-11-27 18:38:20] 2025-11-27 23:37:11,290 | INFO     | process IDs to be killed: [2214215] (in reverse order)
[2025-11-27 18:38:20] 2025-11-27 23:37:11,639 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:38:20] 2025-11-27 23:37:11,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:38:20] 2025-11-27 23:37:11,671 | INFO     | did not find any defunct processes belonging to 2214215
[2025-11-27 18:38:20] 2025-11-27 23:37:11,703 | INFO     | did not find any defunct processes belonging to 2214215
[2025-11-27 18:38:20] 2025-11-27 23:37:11,712 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:38:20] 2025-11-27 23:37:11,712 | INFO     | ready for new job
[2025-11-27 18:38:20] 2025-11-27 23:37:11,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:38:20] 2025-11-27 23:37:11,721 | INFO     | ***************************************
[2025-11-27 18:38:20] 2025-11-27 23:37:11,721 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:38:20] 2025-11-27 23:37:11,721 | INFO     | ***************************************
[2025-11-27 18:38:20] 2025-11-27 23:37:11,721 | INFO     | 
[2025-11-27 18:38:20] 2025-11-27 23:37:11,728 | INFO     | architecture information:
[2025-11-27 18:38:20] 2025-11-27 23:37:11,729 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:38:20] 2025-11-27 23:37:11,773 | INFO     | cat /etc/os-release:
[2025-11-27 18:38:20] NAME="CentOS Linux"
[2025-11-27 18:38:20] VERSION="7 (Core)"
[2025-11-27 18:38:20] ID="centos"
[2025-11-27 18:38:20] ID_LIKE="rhel fedora"
[2025-11-27 18:38:20] VERSION_ID="7"
[2025-11-27 18:38:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:38:20] ANSI_COLOR="0;31"
[2025-11-27 18:38:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:38:20] HOME_URL="https://www.centos.org/"
[2025-11-27 18:38:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:38:20] 
[2025-11-27 18:38:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:38:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:38:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:38:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:38:20] 
[2025-11-27 18:38:20] 2025-11-27 23:37:11,773 | INFO     | ***************************************
[2025-11-27 18:38:20] 2025-11-27 23:37:12,278 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 18:38:20] 2025-11-27 23:37:12,546 | INFO     | sufficient remaining disk space (69517443072 B)
[2025-11-27 18:38:20] 2025-11-27 23:37:12,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:38:20] 2025-11-27 23:37:12,546 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:38:20] 2025-11-27 23:37:12,546 | INFO     | update_server=False
[2025-11-27 18:38:20] 2025-11-27 23:37:12,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:38:20] 2025-11-27 23:37:12,603 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 18:38:20] 2025-11-27 23:37:12,608 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 18:38:20] 2025-11-27 23:37:12,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:38:20] 2025-11-27 23:37:12,609 | INFO     | will abort loop
[2025-11-27 18:38:20] 2025-11-27 23:37:12,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:38:20] 2025-11-27 23:37:13,116 | INFO     | all job control threads have been joined
[2025-11-27 18:38:20] 2025-11-27 23:37:13,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:38:20] 2025-11-27 23:37:13,479 | INFO     | all data control threads have been joined
[2025-11-27 18:38:20] 2025-11-27 23:37:13,552 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:13,614 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:13,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:38:20] 2025-11-27 23:37:13,691 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:13,820 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:13,911 | INFO     | all payload control threads have been joined
[2025-11-27 18:38:20] 2025-11-27 23:37:13,970 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,122 | INFO     | [job] control thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,129 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,139 | INFO     | [job] validate thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,466 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,485 | INFO     | [data] control thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,631 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,817 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:14,917 | INFO     | [payload] control thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:15,190 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:16,721 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:38:20] 2025-11-27 23:37:43,314 | INFO     | PID=2195027 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:38:20] 2025-11-27 23:37:43,314 | INFO     | .. there are 31 such processes running
[2025-11-27 18:38:20] 2025-11-27 23:37:43,314 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:38:20] 2025-11-27 23:37:43,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:38:20] 2025-11-27 23:37:43,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:38:20] 2025-11-27 23:38:10,548 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:38:20] 2025-11-27 23:38:12,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621658908480)>', '<ExcThread(monitor, started 140621155120896)>']
[2025-11-27 18:38:20] 2025-11-27 23:38:12,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:38:20] 2025-11-27 23:38:12,556 | INFO     | [monitor] control thread has ended
[2025-11-27 18:38:20] 2025-11-27 23:38:17,048 | INFO     | all workflow threads have been joined
[2025-11-27 18:38:20] 2025-11-27 23:38:17,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:38:20] 2025-11-27 23:38:17,049 | INFO     | traces error code: 0
[2025-11-27 18:38:20] 2025-11-27 23:38:17,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:38:20] 2025-11-27 23:38:18,740 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:38:20] 2025-11-27 23:38:18,810 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:38:20] 2025-11-27 23:38:18,831 [wrapper] pilotpid: 2195027
[2025-11-27 18:38:20] 2025-11-27 23:38:18,849 [wrapper] Pilot exit status: 0
[2025-11-27 18:38:20] 2025-11-27 23:38:18,951 [wrapper] pandaids: 6891104814 6891104814
[2025-11-27 18:38:20] 2025-11-27 23:38:19,416 [wrapper] cleanup supervisor_pilot 1073158 2195028
[2025-11-27 18:38:20] 2025-11-27 23:38:19,442 [wrapper] Test setup, not cleaning
[2025-11-27 18:38:20] 2025-11-27 23:38:19,476 [wrapper] apfmon messages muted
[2025-11-27 18:38:20] 2025-11-27 23:38:19,501 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:38:20] 2025-11-27 23:38:19,522 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:38:20]  *** Error codes and diagnostics ***
[2025-11-27 18:38:20]     "exeErrorCode": 0,
[2025-11-27 18:38:20]     "exeErrorDiag": "",
[2025-11-27 18:38:20]     "pilotErrorCode": 0,
[2025-11-27 18:38:20]     "pilotErrorDiag": "",
[2025-11-27 18:38:20]  *** Listing of results directory ***
[2025-11-27 18:38:20] total 1710268
[2025-11-27 18:38:20] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-27 18:38:20] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:38:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 13:29 run_atlas
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 13:29 job.xml
[2025-11-27 18:38:20] -rw-r--r--. 3 boincer umatlas 406983913 Nov 26 13:29 EVNT.47483658._000230.pool.root.1
[2025-11-27 18:38:20] -rw-r--r--. 3 boincer umatlas 406983913 Nov 26 13:29 ATLAS.root_0
[2025-11-27 18:38:20] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 13:29 start_atlas.sh
[2025-11-27 18:38:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 13:29 shared
[2025-11-27 18:38:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 13:29 input.tar.gz
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 13:29 boinc_lockfile
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 00:49 pandaJob.out
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas    991578 Nov 27 00:50 agis_schedconf.cvmfs.json
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:15 boinc_task_state.xml
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 18:29 init_data.xml
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas 913766196 Nov 27 18:35 HITS.47483661._001997.pool.root.1
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas      1062 Nov 27 18:36 memory_monitor_summary.json
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas   2141402 Nov 27 18:36 log.47483661._001997.job.log.tgz.1
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas        96 Nov 27 18:36 pilot_heartbeat.json
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas      8621 Nov 27 18:37 heartbeat.json
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:38 wrapper_checkpoint.txt
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas      5010 Nov 27 18:38 pilotlog.txt
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas   7690650 Nov 27 18:38 log.47483661._001997.job.log.1
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:38 boinc_mmap_file
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas       353 Nov 27 18:38 output.list
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:38 runtime_log
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas   9850880 Nov 27 18:38 result.tar.gz
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas      8794 Nov 27 18:38 runtime_log.err
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas       786 Nov 27 18:38 NHoKDmSqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDme7qMDmKcOC3n.diag
[2025-11-27 18:38:20] -rw-r--r--. 1 boincer umatlas     23496 Nov 27 18:38 stderr.txt
[2025-11-27 18:38:20] HITS file was successfully produced:
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas 913766196 Nov 27 18:35 shared/HITS.pool.root.1
[2025-11-27 18:38:20]  *** Contents of shared directory: ***
[2025-11-27 18:38:20] total 1300020
[2025-11-27 18:38:20] -rw-r--r--. 3 boincer umatlas 406983913 Nov 26 13:29 ATLAS.root_0
[2025-11-27 18:38:20] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 13:29 start_atlas.sh
[2025-11-27 18:38:20] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 13:29 input.tar.gz
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas 913766196 Nov 27 18:35 HITS.pool.root.1
[2025-11-27 18:38:20] -rw-------. 1 boincer umatlas   9850880 Nov 27 18:38 result.tar.gz
18:38:22 (2182364): run_atlas exited; CPU time 224636.205067
18:38:22 (2182364): called boinc_finish(0)

</stderr_txt>
]]>

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