Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:30:49 (2303878): wrapper (7.7.26015): starting
17:30:49 (2303878): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:30:49] Arguments: --nthreads 8
[2025-11-26 17:30:49] Threads: 8
[2025-11-26 17:30:49] Checking for CVMFS
[2025-11-26 17:30:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:30:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:30:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:30:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:30:50] 2.13.3.0 9239 30605 350360 153337 3 558 17693762 32935936 21626 16776704 0 114374468 99.511 137332122 37758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:30:50] CVMFS is ok
[2025-11-26 17:30:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:30:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:30:50] Further information can be found at the LHC@home message board.
[2025-11-26 17:30:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:30:50] Checking for apptainer binary...
[2025-11-26 17:30:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:30:50] Running /usr/bin/apptainer --version
[2025-11-26 17:30:50] apptainer version 1.4.4-1.el9
[2025-11-26 17:30:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:30:50] c6-6-39-3.aglt2.org
[2025-11-26 17:30:50] apptainer works
[2025-11-26 17:30:50] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:30:50] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:30:50] Starting ATLAS job with PandaID=6891104810
[2025-11-26 17:30:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:40:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:40:41] 2025-11-27 14:39:39,507 | INFO     | time since job start (58104s) is within the limit (172800.0s)
[2025-11-27 09:40:41] 2025-11-27 14:39:41,050 | INFO     | monitor loop #3611: job 0:6891104810 is in state 'finished'
[2025-11-27 09:40:41] 2025-11-27 14:39:41,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:40:41] 2025-11-27 14:39:41,516 | INFO     | time since job start (58106s) is within the limit (172800.0s)
[2025-11-27 09:40:41] 2025-11-27 14:39:43,533 | INFO     | time since job start (58108s) is within the limit (172800.0s)
[2025-11-27 09:40:41] 2025-11-27 14:39:43,554 | INFO     | monitor loop #3612: job 0:6891104810 is in state 'finished'
[2025-11-27 09:40:41] 2025-11-27 14:39:43,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:40:41] 2025-11-27 14:39:45,540 | INFO     | time since job start (58110s) is within the limit (172800.0s)
[2025-11-27 09:40:41] 2025-11-27 14:39:46,058 | INFO     | monitor loop #3613: job 0:6891104810 is in state 'finished'
[2025-11-27 09:40:41] 2025-11-27 14:39:46,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:40:41] 2025-11-27 14:39:47,826 | INFO     | PID=2309099 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:40:41] 2025-11-27 14:39:47,827 | INFO     | .. there are 34 such processes running
[2025-11-27 09:40:41] 2025-11-27 14:39:48,565 | INFO     | monitor loop #3614: job 0:6891104810 is in state 'finished'
[2025-11-27 09:40:41] 2025-11-27 14:39:48,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:40:41] 2025-11-27 14:39:48,806 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 09:40:41] 2025-11-27 14:39:48,818 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2923.0889642857137
[2025-11-27 09:40:41] 2025-11-27 14:39:48,840 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891104810/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:40:41] 2025-11-27 14:39:48,841 | INFO     | extracted standard info from prmon json
[2025-11-27 09:40:41] 2025-11-27 14:39:48,841 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:40:41] 2025-11-27 14:39:48,841 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:40:41] 2025-11-27 14:39:48,871 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:40:41] 2025-11-27 14:39:48,876 | INFO     | sum of square deviations: 267552215192.46667
[2025-11-27 09:40:41] 2025-11-27 14:39:48,896 | INFO     | time since job start (58113s) is within the limit (172800.0s)
[2025-11-27 09:40:41] 2025-11-27 14:39:48,922 | INFO     | sum of deviations: 1106249207048.7937
[2025-11-27 09:40:41] 2025-11-27 14:39:48,923 | INFO     | mean x: 1764225326.5609243
[2025-11-27 09:40:41] 2025-11-27 14:39:48,923 | INFO     | mean y: 2951230.779411765
[2025-11-27 09:40:41] 2025-11-27 14:39:48,923 | INFO     | intersect: -7291598235.609659
[2025-11-27 09:40:41] 2025-11-27 14:39:48,932 | INFO     | chi2: 14.067815631620409
[2025-11-27 09:40:41] 2025-11-27 14:39:48,934 | INFO     | sum of square deviations: 263359469841.11765
[2025-11-27 09:40:41] 2025-11-27 14:39:48,973 | INFO     | sum of deviations: 1423657568930.9736
[2025-11-27 09:40:41] 2025-11-27 14:39:48,974 | INFO     | mean x: 1764225174.0718057
[2025-11-27 09:40:41] 2025-11-27 14:39:48,974 | INFO     | mean y: 2962772.073917635
[2025-11-27 09:40:41] 2025-11-27 14:39:48,974 | INFO     | intersect: -9534011629.80025
[2025-11-27 09:40:41] 2025-11-27 14:39:48,979 | INFO     | chi2: 10.900761712052123
[2025-11-27 09:40:41] 2025-11-27 14:39:48,979 | INFO     | current chi2=10.900761712052123 (change=22.51276248211313 %)
[2025-11-27 09:40:41] 2025-11-27 14:39:48,979 | INFO     | right removable region: 946
[2025-11-27 09:40:41] 2025-11-27 14:39:48,980 | INFO     | sum of square deviations: 263358330852.25946
[2025-11-27 09:40:41] 2025-11-27 14:39:49,015 | INFO     | sum of deviations: 840345952752.7646
[2025-11-27 09:40:41] 2025-11-27 14:39:49,015 | INFO     | mean x: 1764225479.0707498
[2025-11-27 09:40:41] 2025-11-27 14:39:49,016 | INFO     | mean y: 2960888.630411827
[2025-11-27 09:40:41] 2025-11-27 14:39:49,016 | INFO     | intersect: -5626478424.273299
[2025-11-27 09:40:41] 2025-11-27 14:39:49,017 | INFO     | chi2: 11.972262598142148
[2025-11-27 09:40:41] 2025-11-27 14:39:49,017 | INFO     | current chi2=11.972262598142148 (change=14.896079735137127 %)
[2025-11-27 09:40:41] 2025-11-27 14:39:49,017 | INFO     | left removable region: 10
[2025-11-27 09:40:41] 2025-11-27 14:39:49,022 | INFO     | sum of square deviations: 254288215444.81628
[2025-11-27 09:40:41] 2025-11-27 14:39:49,059 | INFO     | sum of deviations: 1153635689957.2517
[2025-11-27 09:40:41] 2025-11-27 14:39:49,059 | INFO     | mean x: 1764225448.587607
[2025-11-27 09:40:41] 2025-11-27 14:39:49,059 | INFO     | mean y: 2977127.2286324785
[2025-11-27 09:40:41] 2025-11-27 14:39:49,059 | INFO     | intersect: -8000828472.10393
[2025-11-27 09:40:41] 2025-11-27 14:39:49,060 | INFO     | chi2: 8.182904926845922
[2025-11-27 09:40:41] 2025-11-27 14:39:49,060 | INFO     | current memory leak: 4.54 B/s (using 936 data points, chi2=8.18)
[2025-11-27 09:40:41] 2025-11-27 14:39:49,061 | INFO     | could have reported an average CPU frequency of 2912 MHz (35 samples)
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | ..............................
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | . Timing measurements:
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | . get job = 0 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | . initial setup = 3 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | . payload setup = 11 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | . stage-in = 0 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,062 | INFO     | . payload execution = 58036 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,069 | INFO     | . stage-out = 6 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,069 | INFO     | . log creation = 1 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,069 | INFO     | ..............................
[2025-11-27 09:40:41] 2025-11-27 14:39:49,329 | INFO     | 
[2025-11-27 09:40:41] 2025-11-27 14:39:49,329 | INFO     | job summary report
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | --------------------------------------------------
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | PanDA job id: 6891104810
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | task id: 47483661
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | errors: (none)
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | pilot state: finished 
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | transexitcode: 0
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | exeerrorcode: 0
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | exeerrordiag: 
[2025-11-27 09:40:41] 2025-11-27 14:39:49,330 | INFO     | exitcode: 0
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | exitmsg: OK
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | cpuconsumptiontime: 240258 s
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | nevents: 1000
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | neventsw: 0
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | pid: 2316937
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | pgrp: 2316937
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | corecount: 8
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | event service: False
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | sizes: {0: 2284304, 9: 2284566, 11: 2284594, 58051: 2336837, 58059: 2345831, 58061: 2345887, 58093: 2346261}
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | --------------------------------------------------
[2025-11-27 09:40:41] 2025-11-27 14:39:49,331 | INFO     | 
[2025-11-27 09:40:41] 2025-11-27 14:39:49,332 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 09:40:41] 2025-11-27 14:39:49,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,386 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,386 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,386 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,386 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,388 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,388 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:40:41] 2025-11-27 14:39:49,388 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,388 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:40:41] 2025-11-27 14:39:49,388 | INFO     | job 6891104810 has completed (purged errors)
[2025-11-27 09:40:41] 2025-11-27 14:39:49,388 | INFO     | overall cleanup function is called
[2025-11-27 09:40:41] 2025-11-27 14:39:50,407 | INFO     | --- collectZombieJob: --- 10, [2316937]
[2025-11-27 09:40:41] 2025-11-27 14:39:50,407 | INFO     | zombie collector waiting for pid 2316937
[2025-11-27 09:40:41] 2025-11-27 14:39:50,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:40:41] 2025-11-27 14:39:50,408 | INFO     | collected zombie processes
[2025-11-27 09:40:41] 2025-11-27 14:39:50,408 | INFO     | will attempt to kill all subprocesses of pid=2316937
[2025-11-27 09:40:41] 2025-11-27 14:39:51,359 | INFO     | process IDs to be killed: [2316937] (in reverse order)
[2025-11-27 09:40:41] 2025-11-27 14:39:52,235 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:40:41] 2025-11-27 14:39:52,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:40:41] 2025-11-27 14:39:52,326 | INFO     | did not find any defunct processes belonging to 2316937
[2025-11-27 09:40:41] 2025-11-27 14:39:52,362 | INFO     | did not find any defunct processes belonging to 2316937
[2025-11-27 09:40:41] 2025-11-27 14:39:52,400 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:40:41] 2025-11-27 14:39:52,400 | INFO     | ready for new job
[2025-11-27 09:40:41] 2025-11-27 14:39:52,400 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:40:41] 2025-11-27 14:39:52,410 | INFO     | ***************************************
[2025-11-27 09:40:41] 2025-11-27 14:39:52,411 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:40:41] 2025-11-27 14:39:52,412 | INFO     | ***************************************
[2025-11-27 09:40:41] 2025-11-27 14:39:52,412 | INFO     | 
[2025-11-27 09:40:41] 2025-11-27 14:39:52,419 | INFO     | architecture information:
[2025-11-27 09:40:41] 2025-11-27 14:39:52,420 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:40:41] 2025-11-27 14:39:52,517 | INFO     | cat /etc/os-release:
[2025-11-27 09:40:41] NAME="CentOS Linux"
[2025-11-27 09:40:41] VERSION="7 (Core)"
[2025-11-27 09:40:41] ID="centos"
[2025-11-27 09:40:41] ID_LIKE="rhel fedora"
[2025-11-27 09:40:41] VERSION_ID="7"
[2025-11-27 09:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:40:41] ANSI_COLOR="0;31"
[2025-11-27 09:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:40:41] HOME_URL="https://www.centos.org/"
[2025-11-27 09:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:40:41] 
[2025-11-27 09:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:40:41] 
[2025-11-27 09:40:41] 2025-11-27 14:39:52,517 | INFO     | ***************************************
[2025-11-27 09:40:41] 2025-11-27 14:39:53,020 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 09:40:41] 2025-11-27 14:39:53,103 | INFO     | sufficient remaining disk space (66401075200 B)
[2025-11-27 09:40:41] 2025-11-27 14:39:53,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:40:41] 2025-11-27 14:39:53,103 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:40:41] 2025-11-27 14:39:53,103 | INFO     | update_server=False
[2025-11-27 09:40:41] 2025-11-27 14:39:53,103 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:40:41] 2025-11-27 14:39:53,519 | INFO     | all data control threads have been joined
[2025-11-27 09:40:41] 2025-11-27 14:39:53,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:40:41] 2025-11-27 14:39:53,585 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 09:40:41] 2025-11-27 14:39:53,585 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 09:40:41] 2025-11-27 14:39:53,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:40:41] 2025-11-27 14:39:53,586 | INFO     | will abort loop
[2025-11-27 09:40:41] 2025-11-27 14:39:53,616 | INFO     | all job control threads have been joined
[2025-11-27 09:40:41] 2025-11-27 14:39:54,112 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:54,357 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:40:41] 2025-11-27 14:39:54,367 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:54,431 | INFO     | all payload control threads have been joined
[2025-11-27 09:40:41] 2025-11-27 14:39:54,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:40:41] 2025-11-27 14:39:54,525 | INFO     | [data] control thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:54,591 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:54,622 | INFO     | [job] control thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:54,910 | INFO     | [job] validate thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,154 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,272 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,275 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,301 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,302 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,364 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,437 | INFO     | [payload] control thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:55,584 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:57,226 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:40:41] 2025-11-27 14:39:58,498 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:40:41] 2025-11-27 14:39:58,640 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184371255104)>', '<ExcThread(monitor, started 140183865370368)>']
[2025-11-27 09:40:41] 2025-11-27 14:40:03,665 | INFO     | all workflow threads have been joined
[2025-11-27 09:40:41] 2025-11-27 14:40:03,665 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:40:41] 2025-11-27 14:40:03,666 | INFO     | traces error code: 0
[2025-11-27 09:40:41] 2025-11-27 14:40:03,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:40:41] 2025-11-27 14:40:22,890 | INFO     | PID=2309099 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:40:41] 2025-11-27 14:40:22,890 | INFO     | .. there are 34 such processes running
[2025-11-27 09:40:41] 2025-11-27 14:40:22,890 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:40:41] 2025-11-27 14:40:22,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:40:41] 2025-11-27 14:40:22,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:40:41] 2025-11-27 14:40:22,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:40:41] 2025-11-27 14:40:22,891 | INFO     | [monitor] control thread has ended
[2025-11-27 09:40:41] 2025-11-27 14:40:23,182 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:40:41] 2025-11-27 14:40:23,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:40:41] 2025-11-27 14:40:23,212 [wrapper] pilotpid: 2309099
[2025-11-27 09:40:41] 2025-11-27 14:40:23,230 [wrapper] Pilot exit status: 0
[2025-11-27 09:40:41] 2025-11-27 14:40:23,301 [wrapper] pandaids: 6891104810
[2025-11-27 09:40:41] 2025-11-27 14:40:23,575 [wrapper] cleanup supervisor_pilot 1091058 2309100
[2025-11-27 09:40:41] 2025-11-27 14:40:23,593 [wrapper] Test setup, not cleaning
[2025-11-27 09:40:41] 2025-11-27 14:40:23,609 [wrapper] apfmon messages muted
[2025-11-27 09:40:41] 2025-11-27 14:40:23,635 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:40:41] 2025-11-27 14:40:23,651 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:40:41]  *** Error codes and diagnostics ***
[2025-11-27 09:40:41]     "exeErrorCode": 0,
[2025-11-27 09:40:41]     "exeErrorDiag": "",
[2025-11-27 09:40:41]     "pilotErrorCode": 0,
[2025-11-27 09:40:41]     "pilotErrorDiag": "",
[2025-11-27 09:40:41]  *** Listing of results directory ***
[2025-11-27 09:40:41] total 1311388
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-27 09:40:41] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:40:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:30 run_atlas
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:30 job.xml
[2025-11-27 09:40:41] -rw-r--r--. 2 boincer umatlas 406983913 Nov 26 17:30 EVNT.47483658._000230.pool.root.1
[2025-11-27 09:40:41] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:30 start_atlas.sh
[2025-11-27 09:40:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:30 shared
[2025-11-27 09:40:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 17:30 input.tar.gz
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:30 boinc_lockfile
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 17:30 pandaJob.out
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas    991546 Nov 26 17:31 agis_schedconf.cvmfs.json
[2025-11-27 09:40:41] drwx------. 5 boincer umatlas      4096 Nov 26 17:31 pilot3
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas       532 Nov 27 09:15 boinc_task_state.xml
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas 912711511 Nov 27 09:38 HITS.47483661._001993.pool.root.1
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 09:38 init_data.xml
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas      1058 Nov 27 09:39 memory_monitor_summary.json
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas   2117587 Nov 27 09:39 log.47483661._001993.job.log.tgz.1
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas        95 Nov 27 09:39 pilot_heartbeat.json
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas      8613 Nov 27 09:39 heartbeat.json
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas       823 Nov 27 09:40 pilotlog.txt
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas   7508218 Nov 27 09:40 log.47483661._001993.job.log.1
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas       353 Nov 27 09:40 output.list
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:40 runtime_log
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas   9646080 Nov 27 09:40 result.tar.gz
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas      8709 Nov 27 09:40 runtime_log.err
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas       662 Nov 27 09:40 OriKDmSqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDma7qMDmrIdAQn.diag
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:40 boinc_mmap_file
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:40 wrapper_checkpoint.txt
[2025-11-27 09:40:41] -rw-r--r--. 1 boincer umatlas     21754 Nov 27 09:40 stderr.txt
[2025-11-27 09:40:41] HITS file was successfully produced:
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas 912711511 Nov 27 09:38 shared/HITS.pool.root.1
[2025-11-27 09:40:41]  *** Contents of shared directory: ***
[2025-11-27 09:40:41] total 1298792
[2025-11-27 09:40:41] -rw-r--r--. 2 boincer umatlas 406983913 Nov 26 17:30 ATLAS.root_0
[2025-11-27 09:40:41] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:30 start_atlas.sh
[2025-11-27 09:40:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 17:30 input.tar.gz
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas 912711511 Nov 27 09:38 HITS.pool.root.1
[2025-11-27 09:40:41] -rw-------. 1 boincer umatlas   9646080 Nov 27 09:40 result.tar.gz
09:40:43 (2303878): run_atlas exited; CPU time 241953.122254
09:40:43 (2303878): called boinc_finish(0)

</stderr_txt>
]]>

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