Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:00 (809323): wrapper (7.7.26015): starting
00:05:00 (809323): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:05:00] Arguments: --nthreads 9
[2025-11-26 00:05:00] Threads: 9
[2025-11-26 00:05:00] Checking for CVMFS
[2025-11-26 00:05:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:02] 2.13.3.0 12601 29607 380508 153309 2 561 27459091 32935936 35971 16776704 0 140392982 99.492 176519114 33964 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:05:02] CVMFS is ok
[2025-11-26 00:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:02] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:02] Checking for apptainer binary...
[2025-11-26 00:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:02] Running /usr/bin/apptainer --version
[2025-11-26 00:05:02] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:03] c6-12-27-4.aglt2.org
[2025-11-26 00:05:03] apptainer works
[2025-11-26 00:05:03] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:05:03] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:05:03] Starting ATLAS job with PandaID=6891106923
[2025-11-26 00:05:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:07 (809323): BOINC client no longer exists - exiting
14:00:07 (809323): timer handler: client dead, exiting
14:10:03 (629819): wrapper (7.7.26015): starting
14:10:03 (629819): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:10:03] Arguments: --nthreads 10
[2025-11-26 14:10:03] Threads: 10
[2025-11-26 14:10:03] This job has been restarted, cleaning up previous attempt
[2025-11-26 14:10:03] Checking for CVMFS
[2025-11-26 14:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:10:04] 2.13.3.0 12601 30452 364708 153332 3 110 31366122 32935937 33116 16776704 0 145660603 99.494 182992717 33903 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:10:04] CVMFS is ok
[2025-11-26 14:10:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:10:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:10:04] Further information can be found at the LHC@home message board.
[2025-11-26 14:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:10:04] Checking for apptainer binary...
[2025-11-26 14:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:10:04] Running /usr/bin/apptainer --version
[2025-11-26 14:10:04] apptainer version 1.4.4-1.el9
[2025-11-26 14:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:10:04] c6-12-27-4.aglt2.org
[2025-11-26 14:10:04] apptainer works
[2025-11-26 14:10:04] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:10:04] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:10:04] Starting ATLAS job with PandaID=6891106923
[2025-11-26 14:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:15:53]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:15:53] 2025-11-27 21:14:45,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:15:53] 2025-11-27 21:14:45,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:15:53] 2025-11-27 21:14:45,171 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:15:53] 2025-11-27 21:14:45,179 | INFO     | sum of square deviations: 1128073269587.7354
[2025-11-27 16:15:53] 2025-11-27 21:14:45,248 | INFO     | sum of deviations: 5297064294394.749
[2025-11-27 16:15:53] 2025-11-27 21:14:45,248 | INFO     | mean x: 1764231144.2340703
[2025-11-27 16:15:53] 2025-11-27 21:14:45,248 | INFO     | mean y: 3235928.867360208
[2025-11-27 16:15:53] 2025-11-27 21:14:45,248 | INFO     | intersect: -8281018341.776595
[2025-11-27 16:15:53] 2025-11-27 21:14:45,250 | INFO     | chi2: 9.1403182853355
[2025-11-27 16:15:53] 2025-11-27 21:14:45,252 | INFO     | sum of square deviations: 1117108011572.7375
[2025-11-27 16:15:53] 2025-11-27 21:14:45,294 | INFO     | sum of deviations: 5900322070268.219
[2025-11-27 16:15:53] 2025-11-27 21:14:45,295 | INFO     | mean x: 1764230991.7429876
[2025-11-27 16:15:53] 2025-11-27 21:14:45,295 | INFO     | mean y: 3244318.904109589
[2025-11-27 16:15:53] 2025-11-27 21:14:45,295 | INFO     | intersect: -9315040886.997438
[2025-11-27 16:15:53] 2025-11-27 21:14:45,297 | INFO     | chi2: 5.773319782729927
[2025-11-27 16:15:53] 2025-11-27 21:14:45,297 | INFO     | current chi2=5.773319782729927 (change=36.83677523579788 %)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,299 | INFO     | sum of square deviations: 1106214057219.9958
[2025-11-27 16:15:53] 2025-11-27 21:14:45,354 | INFO     | sum of deviations: 6284112059755.937
[2025-11-27 16:15:53] 2025-11-27 21:14:45,354 | INFO     | mean x: 1764230839.2519634
[2025-11-27 16:15:53] 2025-11-27 21:14:45,354 | INFO     | mean y: 3249687.6884816755
[2025-11-27 16:15:53] 2025-11-27 21:14:45,355 | INFO     | intersect: -10018883208.54154
[2025-11-27 16:15:53] 2025-11-27 21:14:45,356 | INFO     | chi2: 4.087219398181924
[2025-11-27 16:15:53] 2025-11-27 21:14:45,356 | INFO     | current chi2=4.087219398181924 (change=29.205040565945 %)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,358 | INFO     | sum of square deviations: 1095390893984.5594
[2025-11-27 16:15:53] 2025-11-27 21:14:45,399 | INFO     | sum of deviations: 6479867322880.468
[2025-11-27 16:15:53] 2025-11-27 21:14:45,399 | INFO     | mean x: 1764230686.7590282
[2025-11-27 16:15:53] 2025-11-27 21:14:45,399 | INFO     | mean y: 3252444.9658568613
[2025-11-27 16:15:53] 2025-11-27 21:14:45,399 | INFO     | intersect: -10433187039.726389
[2025-11-27 16:15:53] 2025-11-27 21:14:45,401 | INFO     | chi2: 3.5795280715428897
[2025-11-27 16:15:53] 2025-11-27 21:14:45,401 | INFO     | current chi2=3.5795280715428897 (change=12.421435630905096 %)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,401 | INFO     | right removable region: 1522
[2025-11-27 16:15:53] 2025-11-27 21:14:45,403 | INFO     | sum of square deviations: 1117105540101.2234
[2025-11-27 16:15:53] 2025-11-27 21:14:45,446 | INFO     | sum of deviations: 4773822068208.445
[2025-11-27 16:15:53] 2025-11-27 21:14:45,446 | INFO     | mean x: 1764231296.7423353
[2025-11-27 16:15:53] 2025-11-27 21:14:45,446 | INFO     | mean y: 3243199.8036529683
[2025-11-27 16:15:53] 2025-11-27 21:14:45,446 | INFO     | intersect: -7535996375.580975
[2025-11-27 16:15:53] 2025-11-27 21:14:45,448 | INFO     | chi2: 6.562622298181577
[2025-11-27 16:15:53] 2025-11-27 21:14:45,448 | INFO     | current chi2=6.562622298181577 (change=28.20138103165963 %)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,450 | INFO     | sum of square deviations: 1106210049305.9465
[2025-11-27 16:15:53] 2025-11-27 21:14:45,494 | INFO     | sum of deviations: 4590571734726.45
[2025-11-27 16:15:53] 2025-11-27 21:14:45,494 | INFO     | mean x: 1764231449.2441099
[2025-11-27 16:15:53] 2025-11-27 21:14:45,494 | INFO     | mean y: 3245764.577879581
[2025-11-27 16:15:53] 2025-11-27 21:14:45,494 | INFO     | intersect: -7317995829.183473
[2025-11-27 16:15:53] 2025-11-27 21:14:45,496 | INFO     | chi2: 6.390387445624828
[2025-11-27 16:15:53] 2025-11-27 21:14:45,496 | INFO     | current chi2=6.390387445624828 (change=2.62448217695651 %)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,496 | INFO     | left removable region: 20
[2025-11-27 16:15:53] 2025-11-27 21:14:45,498 | INFO     | sum of square deviations: 1050698247091.8866
[2025-11-27 16:15:53] 2025-11-27 21:14:45,545 | INFO     | sum of deviations: 5501236252409.568
[2025-11-27 16:15:53] 2025-11-27 21:14:45,546 | INFO     | mean x: 1764231266.2756324
[2025-11-27 16:15:53] 2025-11-27 21:14:45,546 | INFO     | mean y: 3267149.1604527296
[2025-11-27 16:15:53] 2025-11-27 21:14:45,546 | INFO     | intersect: -9233878745.517315
[2025-11-27 16:15:53] 2025-11-27 21:14:45,547 | INFO     | chi2: 0.5786563928015971
[2025-11-27 16:15:53] 2025-11-27 21:14:45,548 | INFO     | current memory leak: 5.24 B/s (using 1502 data points, chi2=0.58)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,549 | INFO     | could have reported an average CPU frequency of 2632 MHz (54 samples)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | ..............................
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . Timing measurements:
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . get job = 0 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . initial setup = 2 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . payload setup = 9 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . stage-in = 0 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . payload execution = 93815 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . stage-out = 5 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | . log creation = 1 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,550 | INFO     | ..............................
[2025-11-27 16:15:53] 2025-11-27 21:14:45,723 | INFO     | 
[2025-11-27 16:15:53] 2025-11-27 21:14:45,727 | INFO     | job summary report
[2025-11-27 16:15:53] 2025-11-27 21:14:45,727 | INFO     | --------------------------------------------------
[2025-11-27 16:15:53] 2025-11-27 21:14:45,727 | INFO     | PanDA job id: 6891106923
[2025-11-27 16:15:53] 2025-11-27 21:14:45,727 | INFO     | task id: 47483661
[2025-11-27 16:15:53] 2025-11-27 21:14:45,727 | INFO     | errors: (none)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | pilot state: finished 
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | transexitcode: 0
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | exeerrorcode: 0
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | exeerrordiag: 
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | exitcode: 0
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | exitmsg: OK
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | cpuconsumptiontime: 269842 s
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | nevents: 1000
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | neventsw: 0
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | pid: 698288
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | pgrp: 698288
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | corecount: 10
[2025-11-27 16:15:53] 2025-11-27 21:14:45,728 | INFO     | event service: False
[2025-11-27 16:15:53] 2025-11-27 21:14:45,729 | INFO     | sizes: {0: 2283476, 1: 2284332, 8: 2284594, 12: 2284622, 93826: 2349057, 93827: 2349056, 93834: 2358234, 93837: 2358290, 93847: 2358536}
[2025-11-27 16:15:53] 2025-11-27 21:14:45,729 | INFO     | --------------------------------------------------
[2025-11-27 16:15:53] 2025-11-27 21:14:45,729 | INFO     | 
[2025-11-27 16:15:53] 2025-11-27 21:14:45,729 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 16:15:53] 2025-11-27 21:14:45,842 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,843 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,844 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,847 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:15:53] 2025-11-27 21:14:45,847 | INFO     | job 6891106923 has completed (purged errors)
[2025-11-27 16:15:53] 2025-11-27 21:14:45,847 | INFO     | overall cleanup function is called
[2025-11-27 16:15:53] 2025-11-27 21:14:46,899 | INFO     | --- collectZombieJob: --- 10, [698288]
[2025-11-27 16:15:53] 2025-11-27 21:14:46,899 | INFO     | zombie collector waiting for pid 698288
[2025-11-27 16:15:53] 2025-11-27 21:14:46,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:15:53] 2025-11-27 21:14:46,899 | INFO     | collected zombie processes
[2025-11-27 16:15:53] 2025-11-27 21:14:46,900 | INFO     | will attempt to kill all subprocesses of pid=698288
[2025-11-27 16:15:53] 2025-11-27 21:14:47,632 | INFO     | process IDs to be killed: [698288] (in reverse order)
[2025-11-27 16:15:53] 2025-11-27 21:14:47,819 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:15:53] 2025-11-27 21:14:47,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:15:53] 2025-11-27 21:14:47,843 | INFO     | did not find any defunct processes belonging to 698288
[2025-11-27 16:15:53] 2025-11-27 21:14:47,881 | INFO     | did not find any defunct processes belonging to 698288
[2025-11-27 16:15:53] 2025-11-27 21:14:47,883 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:15:53] 2025-11-27 21:14:47,884 | INFO     | ready for new job
[2025-11-27 16:15:53] 2025-11-27 21:14:47,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:15:53] 2025-11-27 21:14:47,891 | INFO     | ***************************************
[2025-11-27 16:15:53] 2025-11-27 21:14:47,891 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:15:53] 2025-11-27 21:14:47,891 | INFO     | ***************************************
[2025-11-27 16:15:53] 2025-11-27 21:14:47,891 | INFO     | 
[2025-11-27 16:15:53] 2025-11-27 21:14:47,897 | INFO     | architecture information:
[2025-11-27 16:15:53] 2025-11-27 21:14:47,898 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:15:53] 2025-11-27 21:14:47,941 | INFO     | cat /etc/os-release:
[2025-11-27 16:15:53] NAME="CentOS Linux"
[2025-11-27 16:15:53] VERSION="7 (Core)"
[2025-11-27 16:15:53] ID="centos"
[2025-11-27 16:15:53] ID_LIKE="rhel fedora"
[2025-11-27 16:15:53] VERSION_ID="7"
[2025-11-27 16:15:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:15:53] ANSI_COLOR="0;31"
[2025-11-27 16:15:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:15:53] HOME_URL="https://www.centos.org/"
[2025-11-27 16:15:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:15:53] 
[2025-11-27 16:15:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:15:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:15:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:15:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:15:53] 
[2025-11-27 16:15:53] 2025-11-27 21:14:47,942 | INFO     | ***************************************
[2025-11-27 16:15:53] 2025-11-27 21:14:48,445 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 16:15:53] 2025-11-27 21:14:48,473 | INFO     | sufficient remaining disk space (81951457280 B)
[2025-11-27 16:15:53] 2025-11-27 21:14:48,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:15:53] 2025-11-27 21:14:48,474 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:15:53] 2025-11-27 21:14:48,474 | INFO     | update_server=False
[2025-11-27 16:15:53] 2025-11-27 21:14:48,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:15:53] 2025-11-27 21:14:48,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:15:53] 2025-11-27 21:14:48,475 | INFO     | aborting loop
[2025-11-27 16:15:53] 2025-11-27 21:14:48,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:15:53] 2025-11-27 21:14:48,546 | INFO     | all payload control threads have been joined
[2025-11-27 16:15:53] 2025-11-27 21:14:49,274 | INFO     | all data control threads have been joined
[2025-11-27 16:15:53] 2025-11-27 21:14:49,482 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:49,499 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:49,552 | INFO     | [payload] control thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:49,965 | INFO     | all job control threads have been joined
[2025-11-27 16:15:53] 2025-11-27 21:14:50,046 | INFO     | [job] validate thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,168 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,172 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,282 | INFO     | [data] control thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,302 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,525 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:15:53] 2025-11-27 21:14:50,810 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,811 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,967 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:50,970 | INFO     | [job] control thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:51,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:15:53] 2025-11-27 21:14:51,761 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:14:55,236 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:15:53] 2025-11-27 21:15:19,110 | INFO     | PID=652979 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 16:15:53] 2025-11-27 21:15:19,110 | INFO     | .. there are 56 such processes running
[2025-11-27 16:15:53] 2025-11-27 21:15:19,111 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:15:53] 2025-11-27 21:15:19,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:15:53] 2025-11-27 21:15:19,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:15:53] 2025-11-27 21:15:20,877 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:15:53] 2025-11-27 21:15:21,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474758469440)>', '<ExcThread(monitor, started 140474262210304)>']
[2025-11-27 16:15:53] 2025-11-27 21:15:22,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:15:53] 2025-11-27 21:15:22,129 | INFO     | [monitor] control thread has ended
[2025-11-27 16:15:53] 2025-11-27 21:15:26,824 | INFO     | all workflow threads have been joined
[2025-11-27 16:15:53] 2025-11-27 21:15:26,824 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:15:53] 2025-11-27 21:15:26,828 | INFO     | traces error code: 0
[2025-11-27 16:15:53] 2025-11-27 21:15:26,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:15:53] 2025-11-27 21:15:27,117 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:15:53] 2025-11-27 21:15:27,121 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:15:53] 2025-11-27 21:15:27,124 [wrapper] pilotpid: 652979
[2025-11-27 16:15:53] 2025-11-27 21:15:27,128 [wrapper] Pilot exit status: 0
[2025-11-27 16:15:53] 2025-11-27 21:15:27,148 [wrapper] pandaids: 6891106923 6891106923
[2025-11-27 16:15:53] 2025-11-27 21:15:27,350 [wrapper] cleanup supervisor_pilot   92140 652980
[2025-11-27 16:15:53] 2025-11-27 21:15:27,353 [wrapper] Test setup, not cleaning
[2025-11-27 16:15:53] 2025-11-27 21:15:27,357 [wrapper] apfmon messages muted
[2025-11-27 16:15:53] 2025-11-27 21:15:27,371 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:15:53] 2025-11-27 21:15:27,378 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:15:53]  *** Error codes and diagnostics ***
[2025-11-27 16:15:53]     "exeErrorCode": 0,
[2025-11-27 16:15:53]     "exeErrorDiag": "",
[2025-11-27 16:15:53]     "pilotErrorCode": 0,
[2025-11-27 16:15:53]     "pilotErrorDiag": "",
[2025-11-27 16:15:53]  *** Listing of results directory ***
[2025-11-27 16:15:53] total 1718404
[2025-11-27 16:15:53] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 16:15:53] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:15:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 16:15:53] -rw-r--r--. 3 boincer umatlas 408669905 Nov 26 00:05 EVNT.47483658._000282.pool.root.1
[2025-11-27 16:15:53] -rw-r--r--. 3 boincer umatlas 408669905 Nov 26 00:05 ATLAS.root_0
[2025-11-27 16:15:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-27 16:15:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-27 16:15:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:05 input.tar.gz
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 14:10 pandaJob.out
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas    991522 Nov 26 14:10 agis_schedconf.cvmfs.json
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas       534 Nov 27 15:50 boinc_task_state.xml
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 16:09 init_data.xml
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas 912009764 Nov 27 16:13 HITS.47483661._002518.pool.root.1
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas      1070 Nov 27 16:14 memory_monitor_summary.json
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas   2660223 Nov 27 16:14 log.47483661._002518.job.log.tgz.1
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas      7971 Nov 27 16:14 heartbeat.json
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas        96 Nov 27 16:15 pilot_heartbeat.json
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas      4823 Nov 27 16:15 pilotlog.txt
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas  10527857 Nov 27 16:15 log.47483661._002518.job.log.1
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas       353 Nov 27 16:15 output.list
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:15 runtime_log
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas  13209600 Nov 27 16:15 result.tar.gz
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas      8801 Nov 27 16:15 runtime_log.err
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas       792 Nov 27 16:15 CqONDmmtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnSKODm8IgSYm.diag
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:15 boinc_mmap_file
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas     23419 Nov 27 16:15 stderr.txt
[2025-11-27 16:15:53] -rw-r--r--. 1 boincer umatlas        30 Nov 27 16:15 wrapper_checkpoint.txt
[2025-11-27 16:15:53] HITS file was successfully produced:
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas 912009764 Nov 27 16:13 shared/HITS.pool.root.1
[2025-11-27 16:15:53]  *** Contents of shared directory: ***
[2025-11-27 16:15:53] total 1303232
[2025-11-27 16:15:53] -rw-r--r--. 3 boincer umatlas 408669905 Nov 26 00:05 ATLAS.root_0
[2025-11-27 16:15:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-27 16:15:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:05 input.tar.gz
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas 912009764 Nov 27 16:13 HITS.pool.root.1
[2025-11-27 16:15:53] -rw-------. 1 boincer umatlas  13209600 Nov 27 16:15 result.tar.gz
16:15:55 (629819): run_atlas exited; CPU time 273415.015950
16:15:55 (629819): called boinc_finish(0)

</stderr_txt>
]]>

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