Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:57 (2934279): wrapper (7.7.26015): starting
00:02:57 (2934279): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:02:57] Arguments: --nthreads 12
[2025-11-27 00:02:57] Threads: 12
[2025-11-27 00:02:57] Checking for CVMFS
[2025-11-27 00:02:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:59] 2.13.2.0 9388 34840 180196 153347 0 351 35975103 39288832 8204 16776704 0 26160748 99.637 25136894 40036 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:02:59] CVMFS is ok
[2025-11-27 00:02:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:59] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:59] Checking for apptainer binary...
[2025-11-27 00:02:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:59] Running /usr/bin/apptainer --version
[2025-11-27 00:03:00] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:00] c-210-25.aglt2.org
[2025-11-27 00:03:00] apptainer works
[2025-11-27 00:03:00] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:03:00] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:03:00] Starting ATLAS job with PandaID=6896715510
[2025-11-27 00:03:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:17:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:17:11] 2025-11-28 01:16:18,003 | INFO     | monitor loop #4453: job 0:6896715510 is in state 'finished'
[2025-11-27 20:17:11] 2025-11-28 01:16:18,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,402 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:17:11] 2025-11-28 01:16:18,406 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.176550000001
[2025-11-27 20:17:11] 2025-11-28 01:16:18,410 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896715510/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,411 | INFO     | extracted standard info from prmon json
[2025-11-27 20:17:11] 2025-11-28 01:16:18,411 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:17:11] 2025-11-28 01:16:18,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:17:11] 2025-11-28 01:16:18,420 | INFO     | time since job start (72778s) is within the limit (172800.0s)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,425 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:17:11] 2025-11-28 01:16:18,426 | INFO     | sum of square deviations: 526531289122.4848
[2025-11-27 20:17:11] 2025-11-28 01:16:18,451 | INFO     | sum of deviations: 5080913741201.147
[2025-11-27 20:17:11] 2025-11-28 01:16:18,451 | INFO     | mean x: 1764256197.691534
[2025-11-27 20:17:11] 2025-11-28 01:16:18,451 | INFO     | mean y: 3576262.4786253143
[2025-11-27 20:17:11] 2025-11-28 01:16:18,451 | INFO     | intersect: -17021116748.243736
[2025-11-27 20:17:11] 2025-11-28 01:16:18,452 | INFO     | chi2: 8.7273463506388
[2025-11-27 20:17:11] 2025-11-28 01:16:18,454 | INFO     | sum of square deviations: 519941180494.8348
[2025-11-27 20:17:11] 2025-11-28 01:16:18,479 | INFO     | sum of deviations: 5609877119501.465
[2025-11-27 20:17:11] 2025-11-28 01:16:18,479 | INFO     | mean x: 1764256045.2154882
[2025-11-27 20:17:11] 2025-11-28 01:16:18,479 | INFO     | mean y: 3588500.877104377
[2025-11-27 20:17:11] 2025-11-28 01:16:18,479 | INFO     | intersect: -19031756250.191
[2025-11-27 20:17:11] 2025-11-28 01:16:18,480 | INFO     | chi2: 5.163116403246578
[2025-11-27 20:17:11] 2025-11-28 01:16:18,480 | INFO     | current chi2=5.163116403246578 (change=40.83979028896152 %)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,482 | INFO     | sum of square deviations: 513406039489.71405
[2025-11-27 20:17:11] 2025-11-28 01:16:18,506 | INFO     | sum of deviations: 5858212334415.628
[2025-11-27 20:17:11] 2025-11-28 01:16:18,506 | INFO     | mean x: 1764255892.7362638
[2025-11-27 20:17:11] 2025-11-28 01:16:18,507 | INFO     | mean y: 3594293.300084531
[2025-11-27 20:17:11] 2025-11-28 01:16:18,507 | INFO     | intersect: -20127422556.765823
[2025-11-27 20:17:11] 2025-11-28 01:16:18,508 | INFO     | chi2: 4.150598552010835
[2025-11-27 20:17:11] 2025-11-28 01:16:18,508 | INFO     | current chi2=4.150598552010835 (change=19.610595077791967 %)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,508 | INFO     | right removable region: 1182
[2025-11-27 20:17:11] 2025-11-28 01:16:18,509 | INFO     | sum of square deviations: 519937038594.83527
[2025-11-27 20:17:11] 2025-11-28 01:16:18,533 | INFO     | sum of deviations: 4564208271791.075
[2025-11-27 20:17:11] 2025-11-28 01:16:18,533 | INFO     | mean x: 1764256350.2154882
[2025-11-27 20:17:11] 2025-11-28 01:16:18,533 | INFO     | mean y: 3588209.3981481483
[2025-11-27 20:17:11] 2025-11-28 01:16:18,533 | INFO     | intersect: -15483735888.488213
[2025-11-27 20:17:11] 2025-11-28 01:16:18,534 | INFO     | chi2: 5.6691070272078266
[2025-11-27 20:17:11] 2025-11-28 01:16:18,535 | INFO     | current chi2=5.6691070272078266 (change=35.04202996604031 %)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,536 | INFO     | sum of square deviations: 513400002628.1362
[2025-11-27 20:17:11] 2025-11-28 01:16:18,559 | INFO     | sum of deviations: 4398655029131.439
[2025-11-27 20:17:11] 2025-11-28 01:16:18,559 | INFO     | mean x: 1764256502.7168217
[2025-11-27 20:17:11] 2025-11-28 01:16:18,559 | INFO     | mean y: 3592071.711749789
[2025-11-27 20:17:11] 2025-11-28 01:16:18,560 | INFO     | intersect: -15112020897.955765
[2025-11-27 20:17:11] 2025-11-28 01:16:18,561 | INFO     | chi2: 5.514601750392126
[2025-11-27 20:17:11] 2025-11-28 01:16:18,561 | INFO     | current chi2=5.514601750392126 (change=2.7253900142329486 %)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,561 | INFO     | left removable region: 20
[2025-11-27 20:17:11] 2025-11-28 01:16:18,562 | INFO     | sum of square deviations: 486546574331.99036
[2025-11-27 20:17:11] 2025-11-28 01:16:18,584 | INFO     | sum of deviations: 4890941503261.559
[2025-11-27 20:17:11] 2025-11-28 01:16:18,585 | INFO     | mean x: 1764256472.2607572
[2025-11-27 20:17:11] 2025-11-28 01:16:18,585 | INFO     | mean y: 3618369.334767642
[2025-11-27 20:17:11] 2025-11-28 01:16:18,585 | INFO     | intersect: -17731323479.603485
[2025-11-27 20:17:11] 2025-11-28 01:16:18,586 | INFO     | chi2: 0.6085716793061853
[2025-11-27 20:17:11] 2025-11-28 01:16:18,586 | INFO     | current memory leak: 10.05 B/s (using 1162 data points, chi2=0.61)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,587 | INFO     | could have reported an average CPU frequency of 2600 MHz (43 samples)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,587 | INFO     | ..............................
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . Timing measurements:
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . get job = 0 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . initial setup = 3 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . payload setup = 8 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . stage-in = 0 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . payload execution = 72731 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . stage-out = 3 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | . log creation = 1 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,588 | INFO     | ..............................
[2025-11-27 20:17:11] 2025-11-28 01:16:18,978 | INFO     | 
[2025-11-27 20:17:11] 2025-11-28 01:16:18,978 | INFO     | job summary report
[2025-11-27 20:17:11] 2025-11-28 01:16:18,978 | INFO     | --------------------------------------------------
[2025-11-27 20:17:11] 2025-11-28 01:16:18,978 | INFO     | PanDA job id: 6896715510
[2025-11-27 20:17:11] 2025-11-28 01:16:18,978 | INFO     | task id: 47556161
[2025-11-27 20:17:11] 2025-11-28 01:16:18,978 | INFO     | errors: (none)
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | pilot state: finished 
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | transexitcode: 0
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | exeerrorcode: 0
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | exeerrordiag: 
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | exitcode: 0
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | exitmsg: OK
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | cpuconsumptiontime: 308544 s
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | nevents: 1000
[2025-11-27 20:17:11] 2025-11-28 01:16:18,979 | INFO     | neventsw: 0
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | pid: 2953404
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | pgrp: 2953404
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | corecount: 12
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | event service: False
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | sizes: {0: 2283385, 1: 2284241, 2: 2284241, 9: 2284531, 13: 2284559, 72743: 2343504, 72744: 2343631, 72748: 2352681, 72751: 2352737, 72757: 2352983}
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | --------------------------------------------------
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | 
[2025-11-27 20:17:11] 2025-11-28 01:16:18,980 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:17:11] 2025-11-28 01:16:19,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,014 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:17:11] 2025-11-28 01:16:19,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:17:11] 2025-11-28 01:16:19,014 | INFO     | job 6896715510 has completed (purged errors)
[2025-11-27 20:17:11] 2025-11-28 01:16:19,015 | INFO     | overall cleanup function is called
[2025-11-27 20:17:11] 2025-11-28 01:16:20,037 | INFO     | --- collectZombieJob: --- 10, [2953404]
[2025-11-27 20:17:11] 2025-11-28 01:16:20,039 | INFO     | zombie collector waiting for pid 2953404
[2025-11-27 20:17:11] 2025-11-28 01:16:20,040 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:17:11] 2025-11-28 01:16:20,040 | INFO     | collected zombie processes
[2025-11-27 20:17:11] 2025-11-28 01:16:20,040 | INFO     | will attempt to kill all subprocesses of pid=2953404
[2025-11-27 20:17:11] 2025-11-28 01:16:20,270 | INFO     | process IDs to be killed: [2953404] (in reverse order)
[2025-11-27 20:17:11] 2025-11-28 01:16:20,344 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:17:11] 2025-11-28 01:16:20,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:17:11] 2025-11-28 01:16:20,352 | INFO     | did not find any defunct processes belonging to 2953404
[2025-11-27 20:17:11] 2025-11-28 01:16:20,361 | INFO     | did not find any defunct processes belonging to 2953404
[2025-11-27 20:17:11] 2025-11-28 01:16:20,362 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:17:11] 2025-11-28 01:16:20,362 | INFO     | ready for new job
[2025-11-27 20:17:11] 2025-11-28 01:16:20,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:17:11] 2025-11-28 01:16:20,369 | INFO     | ***************************************
[2025-11-27 20:17:11] 2025-11-28 01:16:20,369 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:17:11] 2025-11-28 01:16:20,370 | INFO     | ***************************************
[2025-11-27 20:17:11] 2025-11-28 01:16:20,370 | INFO     | 
[2025-11-27 20:17:11] 2025-11-28 01:16:20,372 | INFO     | architecture information:
[2025-11-27 20:17:11] 2025-11-28 01:16:20,372 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:17:11] 2025-11-28 01:16:20,387 | INFO     | cat /etc/os-release:
[2025-11-27 20:17:11] NAME="CentOS Linux"
[2025-11-27 20:17:11] VERSION="7 (Core)"
[2025-11-27 20:17:11] ID="centos"
[2025-11-27 20:17:11] ID_LIKE="rhel fedora"
[2025-11-27 20:17:11] VERSION_ID="7"
[2025-11-27 20:17:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:17:11] ANSI_COLOR="0;31"
[2025-11-27 20:17:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:17:11] HOME_URL="https://www.centos.org/"
[2025-11-27 20:17:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:17:11] 
[2025-11-27 20:17:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:17:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:17:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:17:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:17:11] 
[2025-11-27 20:17:11] 2025-11-28 01:16:20,387 | INFO     | ***************************************
[2025-11-27 20:17:11] 2025-11-28 01:16:20,890 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:17:11] 2025-11-28 01:16:20,910 | INFO     | sufficient remaining disk space (48716840960 B)
[2025-11-27 20:17:11] 2025-11-28 01:16:20,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:17:11] 2025-11-28 01:16:20,910 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:17:11] 2025-11-28 01:16:20,911 | INFO     | update_server=False
[2025-11-27 20:17:11] 2025-11-28 01:16:20,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:17:11] 2025-11-28 01:16:21,246 | INFO     | all data control threads have been joined
[2025-11-27 20:17:11] 2025-11-28 01:16:21,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:17:11] 2025-11-28 01:16:21,512 | INFO     | aborting loop
[2025-11-27 20:17:11] 2025-11-28 01:16:21,676 | INFO     | all job control threads have been joined
[2025-11-27 20:17:11] 2025-11-28 01:16:21,917 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,156 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:17:11] 2025-11-28 01:16:22,159 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,202 | INFO     | all payload control threads have been joined
[2025-11-27 20:17:11] 2025-11-28 01:16:22,207 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,251 | INFO     | [data] control thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,518 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,629 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,682 | INFO     | [job] control thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,691 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:22,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:17:11] 2025-11-28 01:16:23,006 | INFO     | [job] validate thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:23,033 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:23,160 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:23,207 | INFO     | [payload] control thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:23,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:23,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:17:11] 2025-11-28 01:16:24,161 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:24,673 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:26,966 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:17:11] 2025-11-28 01:16:31,896 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:17:11] 2025-11-28 01:16:32,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923369858880)>', '<ExcThread(monitor, started 139922644133632)>']
[2025-11-27 20:17:11] 2025-11-28 01:16:37,351 | INFO     | all workflow threads have been joined
[2025-11-27 20:17:11] 2025-11-28 01:16:37,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:17:11] 2025-11-28 01:16:37,351 | INFO     | traces error code: 0
[2025-11-27 20:17:11] 2025-11-28 01:16:37,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:17:11] 2025-11-28 01:16:51,796 | INFO     | PID=2940464 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:17:11] 2025-11-28 01:16:51,796 | INFO     | .. there are 7 such processes running
[2025-11-27 20:17:11] 2025-11-28 01:16:51,796 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:17:11] 2025-11-28 01:16:51,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:17:11] 2025-11-28 01:16:51,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:17:11] 2025-11-28 01:16:51,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:17:11] 2025-11-28 01:16:51,797 | INFO     | [monitor] control thread has ended
[2025-11-27 20:17:11] 2025-11-28 01:16:51,960 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:17:11] 2025-11-28 01:16:51,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:17:11] 2025-11-28 01:16:51,967 [wrapper] pilotpid: 2940464
[2025-11-27 20:17:11] 2025-11-28 01:16:51,971 [wrapper] Pilot exit status: 0
[2025-11-27 20:17:11] 2025-11-28 01:16:51,983 [wrapper] pandaids: 6896715510
[2025-11-27 20:17:11] 2025-11-28 01:16:52,031 [wrapper] cleanup supervisor_pilot  399322 2940465
[2025-11-27 20:17:11] 2025-11-28 01:16:52,035 [wrapper] Test setup, not cleaning
[2025-11-27 20:17:11] 2025-11-28 01:16:52,038 [wrapper] apfmon messages muted
[2025-11-27 20:17:11] 2025-11-28 01:16:52,041 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:17:11] 2025-11-28 01:16:52,045 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:17:11]  *** Error codes and diagnostics ***
[2025-11-27 20:17:11]     "exeErrorCode": 0,
[2025-11-27 20:17:11]     "exeErrorDiag": "",
[2025-11-27 20:17:11]     "pilotErrorCode": 0,
[2025-11-27 20:17:11]     "pilotErrorDiag": "",
[2025-11-27 20:17:11]  *** Listing of results directory ***
[2025-11-27 20:17:11] total 1317908
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 20:17:11] -rwx------. 1 boincer umatlas     36292 Nov 25 02:06 runpilot2-wrapper.sh
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:06 queuedata.json
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:17:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 20:17:11] -rw-r--r--. 2 boincer umatlas 410370176 Nov 27 00:02 EVNT.47483658._002129.pool.root.1
[2025-11-27 20:17:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 20:17:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 20:17:11] -rw-r--r--. 2 boincer umatlas    590099 Nov 27 00:02 input.tar.gz
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:03 pandaJob.out
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 20:17:11] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:02 boinc_task_state.xml
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 20:12 init_data.xml
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas 911074696 Nov 27 20:15 HITS.47556161._001129.pool.root.1
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas      1060 Nov 27 20:16 memory_monitor_summary.json
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas   2758522 Nov 27 20:16 log.47556161._001129.job.log.tgz.1
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas        95 Nov 27 20:16 pilot_heartbeat.json
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas      8629 Nov 27 20:16 heartbeat.json
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas       822 Nov 27 20:16 pilotlog.txt
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas   9329108 Nov 27 20:16 log.47556161._001129.job.log.1
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas       353 Nov 27 20:16 output.list
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:16 runtime_log
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas  12103680 Nov 27 20:16 result.tar.gz
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas       660 Nov 27 20:16 VzWMDmkJ2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOEMKDmgjZgDn.diag
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 20:16 runtime_log.err
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:17 boinc_mmap_file
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:17 wrapper_checkpoint.txt
[2025-11-27 20:17:11] -rw-r--r--. 1 boincer umatlas     21368 Nov 27 20:17 stderr.txt
[2025-11-27 20:17:11] HITS file was successfully produced:
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas 911074696 Nov 27 20:15 shared/HITS.pool.root.1
[2025-11-27 20:17:11]  *** Contents of shared directory: ***
[2025-11-27 20:17:11] total 1302904
[2025-11-27 20:17:11] -rw-r--r--. 2 boincer umatlas 410370176 Nov 27 00:02 ATLAS.root_0
[2025-11-27 20:17:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 20:17:11] -rw-r--r--. 2 boincer umatlas    590099 Nov 27 00:02 input.tar.gz
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas 911074696 Nov 27 20:15 HITS.pool.root.1
[2025-11-27 20:17:11] -rw-------. 1 boincer umatlas  12103680 Nov 27 20:16 result.tar.gz
20:17:13 (2934279): run_atlas exited; CPU time 309222.283062
20:17:13 (2934279): called boinc_finish(0)

</stderr_txt>
]]>

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