Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:00 (2434145): wrapper (7.7.26015): starting
00:03:00 (2434145): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:03:00] Arguments: --nthreads 12
[2025-11-27 00:03:00] Threads: 12
[2025-11-27 00:03:00] Checking for CVMFS
[2025-11-27 00:03:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:01] 2.13.2.0 6869 37621 173740 153347 2 538 37020248 40960001 20176 16776704 0 74689305 99.776 39438309 40902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:03:01] CVMFS is ok
[2025-11-27 00:03:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:01] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:01] Checking for apptainer binary...
[2025-11-27 00:03:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:01] Running /usr/bin/apptainer --version
[2025-11-27 00:03:01] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:01] c-212-13.aglt2.org
[2025-11-27 00:03:01] apptainer works
[2025-11-27 00:03:01] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:03:01] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:03:01] Starting ATLAS job with PandaID=6896715508
[2025-11-27 00:03:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:01:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:01:40] 2025-11-27 17:00:33,688 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:01:40] 2025-11-27 17:00:33,689 | INFO     | sum of square deviations: 108656609694.8288
[2025-11-27 12:01:40] 2025-11-27 17:00:33,704 | INFO     | sum of deviations: 1473971695123.7185
[2025-11-27 12:01:40] 2025-11-27 17:00:33,704 | INFO     | mean x: 1764241310.7177305
[2025-11-27 12:01:40] 2025-11-27 17:00:33,704 | INFO     | mean y: 3539730.9985815603
[2025-11-27 12:01:40] 2025-11-27 17:00:33,705 | INFO     | intersect: -23929120810.034893
[2025-11-27 12:01:40] 2025-11-27 17:00:33,706 | INFO     | chi2: 6.5543907579614675
[2025-11-27 12:01:40] 2025-11-27 17:00:33,707 | INFO     | sum of square deviations: 106361549949.96979
[2025-11-27 12:01:40] 2025-11-27 17:00:33,723 | INFO     | sum of deviations: 1766057826549.5112
[2025-11-27 12:01:40] 2025-11-27 17:00:33,723 | INFO     | mean x: 1764241158.23
[2025-11-27 12:01:40] 2025-11-27 17:00:33,724 | INFO     | mean y: 3559139.3757142858
[2025-11-27 12:01:40] 2025-11-27 17:00:33,724 | INFO     | intersect: -29290409469.37857
[2025-11-27 12:01:40] 2025-11-27 17:00:33,725 | INFO     | chi2: 3.342015006380271
[2025-11-27 12:01:40] 2025-11-27 17:00:33,725 | INFO     | current chi2=3.342015006380271 (change=49.011050305159145 %)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,726 | INFO     | sum of square deviations: 104098963803.86198
[2025-11-27 12:01:40] 2025-11-27 17:00:33,735 | INFO     | sum of deviations: 1891737789741.4626
[2025-11-27 12:01:40] 2025-11-27 17:00:33,735 | INFO     | mean x: 1764241005.7395682
[2025-11-27 12:01:40] 2025-11-27 17:00:33,736 | INFO     | mean y: 3567594.477697842
[2025-11-27 12:01:40] 2025-11-27 17:00:33,736 | INFO     | intersect: -32057091405.522915
[2025-11-27 12:01:40] 2025-11-27 17:00:33,737 | INFO     | chi2: 2.4658101585525505
[2025-11-27 12:01:40] 2025-11-27 17:00:33,737 | INFO     | current chi2=2.4658101585525505 (change=26.21786096576317 %)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,737 | INFO     | sum of square deviations: 101868237623.43333
[2025-11-27 12:01:40] 2025-11-27 17:00:33,748 | INFO     | sum of deviations: 1865376360601.8315
[2025-11-27 12:01:40] 2025-11-27 17:00:33,749 | INFO     | mean x: 1764240853.2333333
[2025-11-27 12:01:40] 2025-11-27 17:00:33,749 | INFO     | mean y: 3565792.268115942
[2025-11-27 12:01:40] 2025-11-27 17:00:33,749 | INFO     | intersect: -32302609899.068516
[2025-11-27 12:01:40] 2025-11-27 17:00:33,750 | INFO     | chi2: 2.4603445399923567
[2025-11-27 12:01:40] 2025-11-27 17:00:33,750 | INFO     | current chi2=2.4603445399923567 (change=0.22165609713450715 %)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,750 | INFO     | right removable region: 689
[2025-11-27 12:01:40] 2025-11-27 17:00:33,751 | INFO     | sum of square deviations: 106360896888.8845
[2025-11-27 12:01:40] 2025-11-27 17:00:33,762 | INFO     | sum of deviations: 1247862555848.1943
[2025-11-27 12:01:40] 2025-11-27 17:00:33,763 | INFO     | mean x: 1764241463.2271428
[2025-11-27 12:01:40] 2025-11-27 17:00:33,763 | INFO     | mean y: 3554721.652857143
[2025-11-27 12:01:40] 2025-11-27 17:00:33,763 | INFO     | intersect: -20695131786.565716
[2025-11-27 12:01:40] 2025-11-27 17:00:33,764 | INFO     | chi2: 4.474604451138266
[2025-11-27 12:01:40] 2025-11-27 17:00:33,764 | INFO     | current chi2=4.474604451138266 (change=31.731191862446305 %)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,765 | INFO     | sum of square deviations: 104097914128.68488
[2025-11-27 12:01:40] 2025-11-27 17:00:33,776 | INFO     | sum of deviations: 1168210274204.7327
[2025-11-27 12:01:40] 2025-11-27 17:00:33,777 | INFO     | mean x: 1764241615.7309353
[2025-11-27 12:01:40] 2025-11-27 17:00:33,777 | INFO     | mean y: 3560087.64028777
[2025-11-27 12:01:40] 2025-11-27 17:00:33,777 | INFO     | intersect: -19795157292.3126
[2025-11-27 12:01:40] 2025-11-27 17:00:33,778 | INFO     | chi2: 4.375194815898887
[2025-11-27 12:01:40] 2025-11-27 17:00:33,778 | INFO     | current chi2=4.375194815898887 (change=2.221640735508829 %)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,778 | INFO     | left removable region: 20
[2025-11-27 12:01:40] 2025-11-27 17:00:33,779 | INFO     | sum of square deviations: 92847073478.7713
[2025-11-27 12:01:40] 2025-11-27 17:00:33,790 | INFO     | sum of deviations: 1442552054976.1816
[2025-11-27 12:01:40] 2025-11-27 17:00:33,790 | INFO     | mean x: 1764241432.7578475
[2025-11-27 12:01:40] 2025-11-27 17:00:33,790 | INFO     | mean y: 3594815.6801195815
[2025-11-27 12:01:40] 2025-11-27 17:00:33,790 | INFO     | intersect: -27407178717.002644
[2025-11-27 12:01:40] 2025-11-27 17:00:33,791 | INFO     | chi2: 0.21565460654699878
[2025-11-27 12:01:40] 2025-11-27 17:00:33,791 | INFO     | current memory leak: 15.54 B/s (using 669 data points, chi2=0.22)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,792 | INFO     | could have reported an average CPU frequency of 2991 MHz (27 samples)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | ..............................
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . Timing measurements:
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . get job = 0 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . initial setup = 2 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . payload setup = 9 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . stage-in = 0 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . payload execution = 42984 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . stage-out = 4 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | . log creation = 1 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,793 | INFO     | ..............................
[2025-11-27 12:01:40] 2025-11-27 17:00:33,886 | INFO     | 
[2025-11-27 12:01:40] 2025-11-27 17:00:33,887 | INFO     | job summary report
[2025-11-27 12:01:40] 2025-11-27 17:00:33,887 | INFO     | --------------------------------------------------
[2025-11-27 12:01:40] 2025-11-27 17:00:33,887 | INFO     | PanDA job id: 6896715508
[2025-11-27 12:01:40] 2025-11-27 17:00:33,887 | INFO     | task id: 47556161
[2025-11-27 12:01:40] 2025-11-27 17:00:33,887 | INFO     | errors: (none)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | pilot state: finished 
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | transexitcode: 0
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | exeerrorcode: 0
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | exeerrordiag: 
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | exitcode: 0
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | exitmsg: OK
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | cpuconsumptiontime: 205169 s
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | nevents: 1000
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | neventsw: 0
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | pid: 2454188
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | pgrp: 2454188
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | corecount: 12
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | event service: False
[2025-11-27 12:01:40] 2025-11-27 17:00:33,888 | INFO     | sizes: {0: 2284042, 1: 2284241, 9: 2284503, 11: 2284531, 42997: 2329970, 42998: 2329969, 43002: 2339147, 43004: 2339203, 43014: 2339449}
[2025-11-27 12:01:40] 2025-11-27 17:00:33,889 | INFO     | --------------------------------------------------
[2025-11-27 12:01:40] 2025-11-27 17:00:33,889 | INFO     | 
[2025-11-27 12:01:40] 2025-11-27 17:00:33,889 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:01:40] 2025-11-27 17:00:33,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,921 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,921 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:01:40] 2025-11-27 17:00:33,921 | INFO     | job 6896715508 has completed (purged errors)
[2025-11-27 12:01:40] 2025-11-27 17:00:33,921 | INFO     | overall cleanup function is called
[2025-11-27 12:01:40] 2025-11-27 17:00:34,966 | INFO     | --- collectZombieJob: --- 10, [2454188]
[2025-11-27 12:01:40] 2025-11-27 17:00:34,969 | INFO     | zombie collector waiting for pid 2454188
[2025-11-27 12:01:40] 2025-11-27 17:00:34,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:01:40] 2025-11-27 17:00:34,969 | INFO     | collected zombie processes
[2025-11-27 12:01:40] 2025-11-27 17:00:34,969 | INFO     | will attempt to kill all subprocesses of pid=2454188
[2025-11-27 12:01:40] 2025-11-27 17:00:35,979 | INFO     | process IDs to be killed: [2454188] (in reverse order)
[2025-11-27 12:01:40] 2025-11-27 17:00:36,225 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:01:40] 2025-11-27 17:00:36,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:01:40] 2025-11-27 17:00:36,243 | INFO     | did not find any defunct processes belonging to 2454188
[2025-11-27 12:01:40] 2025-11-27 17:00:36,260 | INFO     | did not find any defunct processes belonging to 2454188
[2025-11-27 12:01:40] 2025-11-27 17:00:36,261 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:01:40] 2025-11-27 17:00:36,262 | INFO     | ready for new job
[2025-11-27 12:01:40] 2025-11-27 17:00:36,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:01:40] 2025-11-27 17:00:36,279 | INFO     | ***************************************
[2025-11-27 12:01:40] 2025-11-27 17:00:36,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:01:40] 2025-11-27 17:00:36,282 | INFO     | ***************************************
[2025-11-27 12:01:40] 2025-11-27 17:00:36,282 | INFO     | 
[2025-11-27 12:01:40] 2025-11-27 17:00:36,287 | INFO     | architecture information:
[2025-11-27 12:01:40] 2025-11-27 17:00:36,289 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:01:40] 2025-11-27 17:00:36,345 | INFO     | cat /etc/os-release:
[2025-11-27 12:01:40] NAME="CentOS Linux"
[2025-11-27 12:01:40] VERSION="7 (Core)"
[2025-11-27 12:01:40] ID="centos"
[2025-11-27 12:01:40] ID_LIKE="rhel fedora"
[2025-11-27 12:01:40] VERSION_ID="7"
[2025-11-27 12:01:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:01:40] ANSI_COLOR="0;31"
[2025-11-27 12:01:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:01:40] HOME_URL="https://www.centos.org/"
[2025-11-27 12:01:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:01:40] 
[2025-11-27 12:01:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:01:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:01:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:01:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:01:40] 
[2025-11-27 12:01:40] 2025-11-27 17:00:36,346 | INFO     | ***************************************
[2025-11-27 12:01:40] 2025-11-27 17:00:36,850 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:01:40] 2025-11-27 17:00:36,919 | INFO     | sufficient remaining disk space (122059489280 B)
[2025-11-27 12:01:40] 2025-11-27 17:00:36,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:01:40] 2025-11-27 17:00:36,920 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:01:40] 2025-11-27 17:00:36,920 | INFO     | update_server=False
[2025-11-27 12:01:40] 2025-11-27 17:00:36,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:01:40] 2025-11-27 17:00:36,934 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 12:01:40] 2025-11-27 17:00:36,935 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 12:01:40] 2025-11-27 17:00:36,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:01:40] 2025-11-27 17:00:36,935 | INFO     | will abort loop
[2025-11-27 12:01:40] 2025-11-27 17:00:37,186 | INFO     | all job control threads have been joined
[2025-11-27 12:01:40] 2025-11-27 17:00:37,348 | INFO     | all payload control threads have been joined
[2025-11-27 12:01:40] 2025-11-27 17:00:37,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:01:40] 2025-11-27 17:00:37,839 | INFO     | all data control threads have been joined
[2025-11-27 12:01:40] 2025-11-27 17:00:37,927 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:37,941 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,047 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,198 | INFO     | [job] control thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,353 | INFO     | [payload] control thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,599 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,847 | INFO     | [data] control thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,884 | INFO     | [job] validate thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:38,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:01:40] 2025-11-27 17:00:39,323 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:39,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:01:40] 2025-11-27 17:00:39,382 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:39,405 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:39,538 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:39,713 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:39,911 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:00:43,357 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:01:40] 2025-11-27 17:01:07,596 | INFO     | PID=2439903 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:01:40] 2025-11-27 17:01:07,596 | INFO     | .. there are 18 such processes running
[2025-11-27 12:01:40] 2025-11-27 17:01:07,597 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:01:40] 2025-11-27 17:01:07,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:01:40] 2025-11-27 17:01:07,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:01:40] 2025-11-27 17:01:34,970 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:01:40] 2025-11-27 17:01:35,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708869801792)>', '<ExcThread(monitor, started 139708596197120)>']
[2025-11-27 12:01:40] 2025-11-27 17:01:35,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:01:40] 2025-11-27 17:01:35,776 | INFO     | [monitor] control thread has ended
[2025-11-27 12:01:40] 2025-11-27 17:01:40,252 | INFO     | all workflow threads have been joined
[2025-11-27 12:01:40] 2025-11-27 17:01:40,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:01:40] 2025-11-27 17:01:40,256 | INFO     | traces error code: 0
[2025-11-27 12:01:40] 2025-11-27 17:01:40,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:01:40] 2025-11-27 17:01:40,589 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:01:40] 2025-11-27 17:01:40,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:01:40] 2025-11-27 17:01:40,618 [wrapper] pilotpid: 2439903
[2025-11-27 12:01:40] 2025-11-27 17:01:40,621 [wrapper] Pilot exit status: 0
[2025-11-27 12:01:40] 2025-11-27 17:01:40,638 [wrapper] pandaids: 6896715508
[2025-11-27 12:01:40] 2025-11-27 17:01:40,733 [wrapper] cleanup supervisor_pilot 4150367 2439904
[2025-11-27 12:01:40] 2025-11-27 17:01:40,736 [wrapper] Test setup, not cleaning
[2025-11-27 12:01:40] 2025-11-27 17:01:40,739 [wrapper] apfmon messages muted
[2025-11-27 12:01:40] 2025-11-27 17:01:40,742 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:01:40] 2025-11-27 17:01:40,749 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:01:40]  *** Error codes and diagnostics ***
[2025-11-27 12:01:40]     "exeErrorCode": 0,
[2025-11-27 12:01:40]     "exeErrorDiag": "",
[2025-11-27 12:01:40]     "pilotErrorCode": 0,
[2025-11-27 12:01:40]     "pilotErrorDiag": "",
[2025-11-27 12:01:40]  *** Listing of results directory ***
[2025-11-27 12:01:40] total 1321884
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 12:01:40] -rwx------. 1 boincer umatlas     36292 Nov 25 02:06 runpilot2-wrapper.sh
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:06 queuedata.json
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:01:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 12:01:40] -rw-r--r--. 2 boincer umatlas 410370176 Nov 27 00:03 EVNT.47483658._002129.pool.root.1
[2025-11-27 12:01:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 12:01:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:03 input.tar.gz
[2025-11-27 12:01:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:03 pandaJob.out
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 12:01:40] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:50 boinc_task_state.xml
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 11:54 init_data.xml
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas 923086981 Nov 27 11:59 HITS.47556161._001128.pool.root.1
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas      1053 Nov 27 12:00 memory_monitor_summary.json
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas   2382420 Nov 27 12:00 log.47556161._001128.job.log.tgz.1
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas      8580 Nov 27 12:00 heartbeat.json
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas        95 Nov 27 12:01 pilot_heartbeat.json
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:01 boinc_mmap_file
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:01 wrapper_checkpoint.txt
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas      5011 Nov 27 12:01 pilotlog.txt
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas   5731745 Nov 27 12:01 log.47556161._001128.job.log.1
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas       353 Nov 27 12:01 output.list
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:01 runtime_log
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas   8130560 Nov 27 12:01 result.tar.gz
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas       660 Nov 27 12:01 s9TMDmkJ2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNEMKDml23hJo.diag
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 12:01 runtime_log.err
[2025-11-27 12:01:40] -rw-r--r--. 1 boincer umatlas     21180 Nov 27 12:01 stderr.txt
[2025-11-27 12:01:40] HITS file was successfully produced:
[2025-11-27 12:01:40] -rw-------. 1 boincer umatlas 923086981 Nov 27 11:59 shared/HITS.pool.root.1
[2025-11-27 12:01:40]  *** Contents of shared directory: ***
[2025-11-27 12:01:41] total 1310756
[2025-11-27 12:01:41] -rw-r--r--. 2 boincer umatlas 410370176 Nov 27 00:03 ATLAS.root_0
[2025-11-27 12:01:41] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:03 input.tar.gz
[2025-11-27 12:01:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 12:01:41] -rw-------. 1 boincer umatlas 923086981 Nov 27 11:59 HITS.pool.root.1
[2025-11-27 12:01:41] -rw-------. 1 boincer umatlas   8130560 Nov 27 12:01 result.tar.gz
12:01:42 (2434145): run_atlas exited; CPU time 205299.021410
12:01:42 (2434145): called boinc_finish(0)

</stderr_txt>
]]>

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