Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:17 (4130081): wrapper (7.7.26015): starting
00:00:17 (4130081): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:00:17] Arguments: --nthreads 12
[2025-11-27 00:00:17] Threads: 12
[2025-11-27 00:00:17] Checking for CVMFS
[2025-11-27 00:00:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:19] 2.13.2.0 9825 37719 408104 153347 2 360 24377945 40958538 26189 16776704 0 88829034 99.612 87976403 34182 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:00:19] CVMFS is ok
[2025-11-27 00:00:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:19] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:19] Checking for apptainer binary...
[2025-11-27 00:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:19] Running /usr/bin/apptainer --version
[2025-11-27 00:00:19] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:20] c-211-35-1.aglt2.org
[2025-11-27 00:00:20] apptainer works
[2025-11-27 00:00:20] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:00:20] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:00:20] Starting ATLAS job with PandaID=6891106928
[2025-11-27 00:00:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:58:48]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:58:48] 2025-11-28 13:57:41,580 | INFO     | monitor loop #6568: job 0:6891106928 is in state 'finished'
[2025-11-28 08:58:48] 2025-11-28 13:57:41,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:58:48] 2025-11-28 13:57:42,797 | INFO     | time since job start (118571s) is within the limit (172800.0s)
[2025-11-28 08:58:48] 2025-11-28 13:57:44,104 | INFO     | monitor loop #6569: job 0:6891106928 is in state 'finished'
[2025-11-28 08:58:48] 2025-11-28 13:57:44,105 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:58:48] 2025-11-28 13:57:44,807 | INFO     | time since job start (118573s) is within the limit (172800.0s)
[2025-11-28 08:58:48] 2025-11-28 13:57:46,619 | INFO     | monitor loop #6570: job 0:6891106928 is in state 'finished'
[2025-11-28 08:58:48] 2025-11-28 13:57:46,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:58:48] 2025-11-28 13:57:47,445 | INFO     | PID=4140777 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:58:48] 2025-11-28 13:57:47,445 | INFO     | .. there are 25 such processes running
[2025-11-28 08:58:48] 2025-11-28 13:57:48,447 | INFO     | time since job start (118577s) is within the limit (172800.0s)
[2025-11-28 08:58:48] 2025-11-28 13:57:49,128 | INFO     | monitor loop #6571: job 0:6891106928 is in state 'finished'
[2025-11-28 08:58:48] 2025-11-28 13:57:49,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:58:48] 2025-11-28 13:57:50,471 | INFO     | time since job start (118579s) is within the limit (172800.0s)
[2025-11-28 08:58:48] 2025-11-28 13:57:51,633 | INFO     | monitor loop #6572: job 0:6891106928 is in state 'finished'
[2025-11-28 08:58:48] 2025-11-28 13:57:51,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:58:48] 2025-11-28 13:57:52,228 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 08:58:48] 2025-11-28 13:57:52,255 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2377.3131458333323
[2025-11-28 08:58:48] 2025-11-28 13:57:52,296 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891106928/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:58:48] 2025-11-28 13:57:52,297 | INFO     | extracted standard info from prmon json
[2025-11-28 08:58:48] 2025-11-28 13:57:52,297 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:58:48] 2025-11-28 13:57:52,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:58:48] 2025-11-28 13:57:52,392 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:58:48] 2025-11-28 13:57:52,400 | INFO     | sum of square deviations: 2267448971368.214
[2025-11-28 08:58:48] 2025-11-28 13:57:52,496 | INFO     | time since job start (118581s) is within the limit (172800.0s)
[2025-11-28 08:58:48] 2025-11-28 13:57:52,620 | INFO     | sum of deviations: 13322745645778.393
[2025-11-28 08:58:48] 2025-11-28 13:57:52,620 | INFO     | mean x: 1764279022.1962905
[2025-11-28 08:58:48] 2025-11-28 13:57:52,620 | INFO     | mean y: 3420873.300875837
[2025-11-28 08:58:48] 2025-11-28 13:57:52,620 | INFO     | intersect: -10362872241.873611
[2025-11-28 08:58:48] 2025-11-28 13:57:52,623 | INFO     | chi2: 28.833430639560934
[2025-11-28 08:58:48] 2025-11-28 13:57:52,631 | INFO     | sum of square deviations: 2249975430446.4517
[2025-11-28 08:58:48] 2025-11-28 13:57:52,810 | INFO     | sum of deviations: 14175129721868.916
[2025-11-28 08:58:48] 2025-11-28 13:57:52,810 | INFO     | mean x: 1764278869.7174587
[2025-11-28 08:58:48] 2025-11-28 13:57:52,810 | INFO     | mean y: 3428310.478822314
[2025-11-28 08:58:48] 2025-11-28 13:57:52,810 | INFO     | intersect: -11111751662.324194
[2025-11-28 08:58:48] 2025-11-28 13:57:52,813 | INFO     | chi2: 24.799755713998145
[2025-11-28 08:58:48] 2025-11-28 13:57:52,813 | INFO     | current chi2=24.799755713998145 (change=13.989576807514473 %)
[2025-11-28 08:58:48] 2025-11-28 13:57:52,814 | INFO     | right removable region: 1935
[2025-11-28 08:58:48] 2025-11-28 13:57:52,820 | INFO     | sum of square deviations: 2249960988938.231
[2025-11-28 08:58:48] 2025-11-28 13:57:52,988 | INFO     | sum of deviations: 12406711548370.455
[2025-11-28 08:58:48] 2025-11-28 13:57:52,992 | INFO     | mean x: 1764279174.7381198
[2025-11-28 08:58:48] 2025-11-28 13:57:52,993 | INFO     | mean y: 3428862.8786157025
[2025-11-28 08:58:48] 2025-11-28 13:57:52,993 | INFO     | intersect: -9725141063.1726
[2025-11-28 08:58:48] 2025-11-28 13:57:52,996 | INFO     | chi2: 24.920851345425415
[2025-11-28 08:58:48] 2025-11-28 13:57:52,997 | INFO     | current chi2=24.920851345425415 (change=13.569593375986486 %)
[2025-11-28 08:58:48] 2025-11-28 13:57:52,997 | INFO     | left removable region: 10
[2025-11-28 08:58:48] 2025-11-28 13:57:53,004 | INFO     | sum of square deviations: 2211821428882.779
[2025-11-28 08:58:48] 2025-11-28 13:57:53,172 | INFO     | sum of deviations: 12698653665450.13
[2025-11-28 08:58:48] 2025-11-28 13:57:53,177 | INFO     | mean x: 1764279144.305974
[2025-11-28 08:58:48] 2025-11-28 13:57:53,177 | INFO     | mean y: 3444039.806233766
[2025-11-28 08:58:48] 2025-11-28 13:57:53,177 | INFO     | intersect: -10125750627.61085
[2025-11-28 08:58:48] 2025-11-28 13:57:53,180 | INFO     | chi2: 17.955635174426384
[2025-11-28 08:58:48] 2025-11-28 13:57:53,180 | INFO     | current memory leak: 5.74 B/s (using 1925 data points, chi2=17.96)
[2025-11-28 08:58:48] 2025-11-28 13:57:53,187 | INFO     | could have reported an average CPU frequency of 2423 MHz (68 samples)
[2025-11-28 08:58:48] 2025-11-28 13:57:53,187 | INFO     | ..............................
[2025-11-28 08:58:48] 2025-11-28 13:57:53,187 | INFO     | . Timing measurements:
[2025-11-28 08:58:48] 2025-11-28 13:57:53,187 | INFO     | . get job = 0 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,187 | INFO     | . initial setup = 3 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,187 | INFO     | . payload setup = 44 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,188 | INFO     | . stage-in = 0 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,188 | INFO     | . payload execution = 118409 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,188 | INFO     | . stage-out = 16 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,188 | INFO     | . log creation = 2 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,188 | INFO     | ..............................
[2025-11-28 08:58:48] 2025-11-28 13:57:53,433 | INFO     | 
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | job summary report
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | --------------------------------------------------
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | PanDA job id: 6891106928
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | task id: 47483661
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | errors: (none)
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | pilot state: finished 
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | transexitcode: 0
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | exeerrorcode: 0
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | exeerrordiag: 
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | exitcode: 0
[2025-11-28 08:58:48] 2025-11-28 13:57:53,440 | INFO     | exitmsg: OK
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | cpuconsumptiontime: 319225 s
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | nevents: 1000
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | neventsw: 0
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | pid: 4162962
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | pgrp: 4162962
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | corecount: 12
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | event service: False
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | sizes: {0: 2284133, 1: 2284332, 2: 2284332, 13: 2284360, 24: 2284416, 32: 2284706, 36: 2284862, 118458: 2362186, 118459: 2362185, 118476: 2371263, 118477: 2371319,
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | --------------------------------------------------
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | 
[2025-11-28 08:58:48] 2025-11-28 13:57:53,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-28 08:58:48] 2025-11-28 13:57:53,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,651 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,651 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:58:48] 2025-11-28 13:57:53,653 | INFO     | job 6891106928 has completed (purged errors)
[2025-11-28 08:58:48] 2025-11-28 13:57:53,654 | INFO     | overall cleanup function is called
[2025-11-28 08:58:48] 2025-11-28 13:57:54,770 | INFO     | --- collectZombieJob: --- 10, [4162962]
[2025-11-28 08:58:48] 2025-11-28 13:57:54,771 | INFO     | zombie collector waiting for pid 4162962
[2025-11-28 08:58:48] 2025-11-28 13:57:54,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:58:48] 2025-11-28 13:57:54,771 | INFO     | collected zombie processes
[2025-11-28 08:58:48] 2025-11-28 13:57:54,771 | INFO     | will attempt to kill all subprocesses of pid=4162962
[2025-11-28 08:58:48] 2025-11-28 13:57:56,379 | INFO     | process IDs to be killed: [4162962] (in reverse order)
[2025-11-28 08:58:48] 2025-11-28 13:57:56,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:58:48] 2025-11-28 13:57:56,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:58:48] 2025-11-28 13:57:56,764 | INFO     | did not find any defunct processes belonging to 4162962
[2025-11-28 08:58:48] 2025-11-28 13:57:56,817 | INFO     | did not find any defunct processes belonging to 4162962
[2025-11-28 08:58:48] 2025-11-28 13:57:56,819 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:58:48] 2025-11-28 13:57:56,819 | INFO     | ready for new job
[2025-11-28 08:58:48] 2025-11-28 13:57:56,819 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:58:48] 2025-11-28 13:57:56,837 | INFO     | ***************************************
[2025-11-28 08:58:48] 2025-11-28 13:57:56,837 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:58:48] 2025-11-28 13:57:56,838 | INFO     | ***************************************
[2025-11-28 08:58:48] 2025-11-28 13:57:56,838 | INFO     | 
[2025-11-28 08:58:48] 2025-11-28 13:57:56,848 | INFO     | architecture information:
[2025-11-28 08:58:48] 2025-11-28 13:57:56,864 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:58:48] 2025-11-28 13:57:56,977 | INFO     | cat /etc/os-release:
[2025-11-28 08:58:48] NAME="CentOS Linux"
[2025-11-28 08:58:48] VERSION="7 (Core)"
[2025-11-28 08:58:48] ID="centos"
[2025-11-28 08:58:48] ID_LIKE="rhel fedora"
[2025-11-28 08:58:48] VERSION_ID="7"
[2025-11-28 08:58:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:58:48] ANSI_COLOR="0;31"
[2025-11-28 08:58:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:58:48] HOME_URL="https://www.centos.org/"
[2025-11-28 08:58:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:58:48] 
[2025-11-28 08:58:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:58:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:58:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:58:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:58:48] 
[2025-11-28 08:58:48] 2025-11-28 13:57:56,977 | INFO     | ***************************************
[2025-11-28 08:58:48] 2025-11-28 13:57:57,491 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-28 08:58:48] 2025-11-28 13:57:57,652 | INFO     | sufficient remaining disk space (121712410624 B)
[2025-11-28 08:58:48] 2025-11-28 13:57:57,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:58:48] 2025-11-28 13:57:57,653 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:58:48] 2025-11-28 13:57:57,653 | INFO     | update_server=False
[2025-11-28 08:58:48] 2025-11-28 13:57:57,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:58:48] 2025-11-28 13:57:57,694 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:58:48] 2025-11-28 13:57:57,695 | INFO     | aborting loop
[2025-11-28 08:58:48] 2025-11-28 13:57:57,856 | INFO     | all data control threads have been joined
[2025-11-28 08:58:48] 2025-11-28 13:57:57,894 | INFO     | all job control threads have been joined
[2025-11-28 08:58:48] 2025-11-28 13:57:57,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:58:48] 2025-11-28 13:57:58,452 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:58:48] 2025-11-28 13:57:58,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:58:48] 2025-11-28 13:57:58,659 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:58,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:58,701 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:58,863 | INFO     | [data] control thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:58,916 | INFO     | [job] control thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:58,956 | INFO     | all payload control threads have been joined
[2025-11-28 08:58:48] 2025-11-28 13:57:59,006 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,322 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,326 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,330 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,330 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,460 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,524 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,560 | INFO     | [job] validate thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:57:59,963 | INFO     | [payload] control thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:58:00,619 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:58:01,923 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:58:48] 2025-11-28 13:58:08,634 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:58:48] 2025-11-28 13:58:09,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994929903424)>', '<ExcThread(monitor, started 139994450618112)>']
[2025-11-28 08:58:48] 2025-11-28 13:58:14,097 | INFO     | all workflow threads have been joined
[2025-11-28 08:58:48] 2025-11-28 13:58:14,098 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:58:48] 2025-11-28 13:58:14,098 | INFO     | traces error code: 0
[2025-11-28 08:58:48] 2025-11-28 13:58:14,098 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:58:48] 2025-11-28 13:58:27,400 | INFO     | PID=4140777 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:58:48] 2025-11-28 13:58:27,401 | INFO     | .. there are 25 such processes running
[2025-11-28 08:58:48] 2025-11-28 13:58:27,401 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:58:48] 2025-11-28 13:58:27,401 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:58:48] 2025-11-28 13:58:27,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:58:48] 2025-11-28 13:58:27,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:58:48] 2025-11-28 13:58:27,402 | INFO     | [monitor] control thread has ended
[2025-11-28 08:58:48] 2025-11-28 13:58:27,828 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:58:48] 2025-11-28 13:58:27,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:58:48] 2025-11-28 13:58:27,875 [wrapper] pilotpid: 4140777
[2025-11-28 08:58:48] 2025-11-28 13:58:27,917 [wrapper] Pilot exit status: 0
[2025-11-28 08:58:48] 2025-11-28 13:58:28,029 [wrapper] pandaids: 6891106928
[2025-11-28 08:58:48] 2025-11-28 13:58:28,661 [wrapper] cleanup supervisor_pilot 2703131 4140778
[2025-11-28 08:58:48] 2025-11-28 13:58:28,674 [wrapper] Test setup, not cleaning
[2025-11-28 08:58:48] 2025-11-28 13:58:28,687 [wrapper] apfmon messages muted
[2025-11-28 08:58:48] 2025-11-28 13:58:28,715 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:58:48] 2025-11-28 13:58:28,744 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:58:48]  *** Error codes and diagnostics ***
[2025-11-28 08:58:48]     "exeErrorCode": 0,
[2025-11-28 08:58:48]     "exeErrorDiag": "",
[2025-11-28 08:58:48]     "pilotErrorCode": 0,
[2025-11-28 08:58:48]     "pilotErrorDiag": "",
[2025-11-28 08:58:48]  *** Listing of results directory ***
[2025-11-28 08:58:48] total 1345476
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-28 08:58:48] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:58:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-28 08:58:48] -rw-r--r--. 2 boincer umatlas 410750845 Nov 27 00:00 EVNT.47483658._000283.pool.root.1
[2025-11-28 08:58:48] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:00 input.tar.gz
[2025-11-28 08:58:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-28 08:58:48] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:00 start_atlas.sh
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 00:00 pandaJob.out
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-28 08:58:48] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas       533 Nov 28 08:19 boinc_task_state.xml
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas 928044743 Nov 28 08:54 HITS.47483661._002523.pool.root.1
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas      6881 Nov 28 08:54 init_data.xml
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas      1063 Nov 28 08:56 memory_monitor_summary.json
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas   1516240 Nov 28 08:57 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas   3230895 Nov 28 08:57 log.47483661._002523.job.log.tgz.1
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas        95 Nov 28 08:57 pilot_heartbeat.json
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas      8632 Nov 28 08:57 heartbeat.json
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas       823 Nov 28 08:58 pilotlog.txt
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas  14296223 Nov 28 08:58 log.47483661._002523.job.log.1
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas       353 Nov 28 08:58 output.list
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas       620 Nov 28 08:58 runtime_log
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas  17551360 Nov 28 08:58 result.tar.gz
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas       667 Nov 28 08:58 wXTNDmmtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrSKODmWheUjn.diag
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas      8717 Nov 28 08:58 runtime_log.err
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas        29 Nov 28 08:58 wrapper_checkpoint.txt
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 08:58 boinc_mmap_file
[2025-11-28 08:58:48] -rw-r--r--. 1 boincer umatlas     21914 Nov 28 08:58 stderr.txt
[2025-11-28 08:58:48] HITS file was successfully produced:
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas 928044743 Nov 28 08:54 shared/HITS.pool.root.1
[2025-11-28 08:58:48]  *** Contents of shared directory: ***
[2025-11-28 08:58:48] total 1325164
[2025-11-28 08:58:48] -rw-r--r--. 2 boincer umatlas 410750845 Nov 27 00:00 ATLAS.root_0
[2025-11-28 08:58:48] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:00 input.tar.gz
[2025-11-28 08:58:48] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:00 start_atlas.sh
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas 928044743 Nov 28 08:54 HITS.pool.root.1
[2025-11-28 08:58:48] -rw-------. 1 boincer umatlas  17551360 Nov 28 08:58 result.tar.gz
08:58:50 (4130081): run_atlas exited; CPU time 322203.289133
08:58:50 (4130081): called boinc_finish(0)

</stderr_txt>
]]>

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