Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:24:19 (3790348): wrapper (7.7.26015): starting
00:24:19 (3790348): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:24:19] Arguments: --nthreads 9
[2025-11-26 00:24:19] Threads: 9
[2025-11-26 00:24:19] Checking for CVMFS
[2025-11-26 00:24:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:24:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:24:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:24:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:24:22] 2.13.2.0 5795 32486 169736 153311 3 110 21878550 39288832 9098 16776704 0 23603994 99.581 22206651 36435 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:24:22] CVMFS is ok
[2025-11-26 00:24:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:24:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:24:22] Further information can be found at the LHC@home message board.
[2025-11-26 00:24:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:24:22] Checking for apptainer binary...
[2025-11-26 00:24:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:24:22] Running /usr/bin/apptainer --version
[2025-11-26 00:24:22] apptainer version 1.4.4-1.el9
[2025-11-26 00:24:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:24:22] c-210-14.aglt2.org
[2025-11-26 00:24:22] apptainer works
[2025-11-26 00:24:23] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:24:23] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:24:23] Starting ATLAS job with PandaID=6891106042
[2025-11-26 00:24:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:33:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:33:01] 2025-11-27 15:32:28,289 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.176049999999
[2025-11-27 10:33:01] 2025-11-27 15:32:28,296 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891106042/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,297 | INFO     | extracted standard info from prmon json
[2025-11-27 10:33:01] 2025-11-27 15:32:28,297 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:33:01] 2025-11-27 15:32:28,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:33:01] 2025-11-27 15:32:28,332 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:33:01] 2025-11-27 15:32:28,335 | INFO     | sum of square deviations: 2525496827010.2876
[2025-11-27 10:33:01] 2025-11-27 15:32:28,429 | INFO     | sum of deviations: 9671968270285.238
[2025-11-27 10:33:01] 2025-11-27 15:32:28,429 | INFO     | mean x: 1764196171.4811134
[2025-11-27 10:33:01] 2025-11-27 15:32:28,429 | INFO     | mean y: 3078075.1371769384
[2025-11-27 10:33:01] 2025-11-27 15:32:28,429 | INFO     | intersect: -6753315047.448408
[2025-11-27 10:33:01] 2025-11-27 15:32:28,432 | INFO     | chi2: 16.220969891494015
[2025-11-27 10:33:01] 2025-11-27 15:32:28,434 | INFO     | sum of square deviations: 2506716480940.734
[2025-11-27 10:33:01] 2025-11-27 15:32:28,530 | INFO     | sum of deviations: 10424070966271.004
[2025-11-27 10:33:01] 2025-11-27 15:32:28,530 | INFO     | mean x: 1764196018.9885402
[2025-11-27 10:33:01] 2025-11-27 15:32:28,530 | INFO     | mean y: 3084182.1320378673
[2025-11-27 10:33:01] 2025-11-27 15:32:28,531 | INFO     | intersect: -7333247884.208307
[2025-11-27 10:33:01] 2025-11-27 15:32:28,533 | INFO     | chi2: 12.812854590743717
[2025-11-27 10:33:01] 2025-11-27 15:32:28,534 | INFO     | current chi2=12.812854590743717 (change=21.010551918584426 %)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,534 | INFO     | right removable region: 2006
[2025-11-27 10:33:01] 2025-11-27 15:32:28,537 | INFO     | sum of square deviations: 2506712822160.7344
[2025-11-27 10:33:01] 2025-11-27 15:32:28,634 | INFO     | sum of deviations: 8804926129440.768
[2025-11-27 10:33:01] 2025-11-27 15:32:28,635 | INFO     | mean x: 1764196323.9885402
[2025-11-27 10:33:01] 2025-11-27 15:32:28,635 | INFO     | mean y: 3085114.032884903
[2025-11-27 10:33:01] 2025-11-27 15:32:28,635 | INFO     | intersect: -6193722981.902249
[2025-11-27 10:33:01] 2025-11-27 15:32:28,638 | INFO     | chi2: 12.025752098051274
[2025-11-27 10:33:01] 2025-11-27 15:32:28,638 | INFO     | current chi2=12.025752098051274 (change=25.862928181887803 %)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,641 | INFO     | sum of square deviations: 2488022167898.4673
[2025-11-27 10:33:01] 2025-11-27 15:32:28,739 | INFO     | sum of deviations: 8058647805756.886
[2025-11-27 10:33:01] 2025-11-27 15:32:28,739 | INFO     | mean x: 1764196476.496004
[2025-11-27 10:33:01] 2025-11-27 15:32:28,739 | INFO     | mean y: 3091202.8006993006
[2025-11-27 10:33:01] 2025-11-27 15:32:28,739 | INFO     | intersect: -5711101479.110619
[2025-11-27 10:33:01] 2025-11-27 15:32:28,742 | INFO     | chi2: 9.014866383452492
[2025-11-27 10:33:01] 2025-11-27 15:32:28,742 | INFO     | current chi2=9.014866383452492 (change=25.03698471455007 %)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,745 | INFO     | sum of square deviations: 2469425363435.001
[2025-11-27 10:33:01] 2025-11-27 15:32:28,844 | INFO     | sum of deviations: 7678070095272.97
[2025-11-27 10:33:01] 2025-11-27 15:32:28,844 | INFO     | mean x: 1764196629.0005007
[2025-11-27 10:33:01] 2025-11-27 15:32:28,844 | INFO     | mean y: 3094322.03104657
[2025-11-27 10:33:01] 2025-11-27 15:32:28,844 | INFO     | intersect: -5482240679.334613
[2025-11-27 10:33:01] 2025-11-27 15:32:28,847 | INFO     | chi2: 8.218125569649285
[2025-11-27 10:33:01] 2025-11-27 15:32:28,847 | INFO     | current chi2=8.218125569649285 (change=8.838076793525072 %)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,847 | INFO     | left removable region: 30
[2025-11-27 10:33:01] 2025-11-27 15:32:28,850 | INFO     | sum of square deviations: 2392338987555.9897
[2025-11-27 10:33:01] 2025-11-27 15:32:28,936 | INFO     | monitor loop #7874: job 0:6891106042 is in state 'finished'
[2025-11-27 10:33:01] 2025-11-27 15:32:28,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,947 | INFO     | sum of deviations: 8152827214334.62
[2025-11-27 10:33:01] 2025-11-27 15:32:28,947 | INFO     | mean x: 1764196903.5020242
[2025-11-27 10:33:01] 2025-11-27 15:32:28,947 | INFO     | mean y: 3105347.4691295545
[2025-11-27 10:33:01] 2025-11-27 15:32:28,948 | INFO     | intersect: -6009082975.812773
[2025-11-27 10:33:01] 2025-11-27 15:32:28,950 | INFO     | chi2: 3.9609481509479227
[2025-11-27 10:33:01] 2025-11-27 15:32:28,951 | INFO     | current memory leak: 3.41 B/s (using 1976 data points, chi2=3.96)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,952 | INFO     | could have reported an average CPU frequency of 2593 MHz (70 samples)
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | ..............................
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . Timing measurements:
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . get job = 0 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . initial setup = 3 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . payload setup = 35 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . stage-in = 0 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . payload execution = 122718 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . stage-out = 5 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,953 | INFO     | . log creation = 1 s
[2025-11-27 10:33:01] 2025-11-27 15:32:28,954 | INFO     | ..............................
[2025-11-27 10:33:01] 2025-11-27 15:32:29,070 | INFO     | 
[2025-11-27 10:33:01] 2025-11-27 15:32:29,070 | INFO     | job summary report
[2025-11-27 10:33:01] 2025-11-27 15:32:29,070 | INFO     | --------------------------------------------------
[2025-11-27 10:33:01] 2025-11-27 15:32:29,070 | INFO     | PanDA job id: 6891106042
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | task id: 47483661
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | errors: (none)
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | pilot state: finished 
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | transexitcode: 0
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | exeerrorcode: 0
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | exeerrordiag: 
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | exitcode: 0
[2025-11-27 10:33:01] 2025-11-27 15:32:29,071 | INFO     | exitmsg: OK
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | cpuconsumptiontime: 310035 s
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | nevents: 1000
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | neventsw: 0
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | pid: 3802545
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | pgrp: 3802545
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | corecount: 9
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | event service: False
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | sizes: {0: 2284133, 1: 2284332, 12: 2284332, 23: 2284360, 25: 2284650, 34: 2284678, 122759: 2367701, 122765: 2376751, 122775: 2376941}
[2025-11-27 10:33:01] 2025-11-27 15:32:29,072 | INFO     | --------------------------------------------------
[2025-11-27 10:33:01] 2025-11-27 15:32:29,073 | INFO     | 
[2025-11-27 10:33:01] 2025-11-27 15:32:29,073 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 10:33:01] 2025-11-27 15:32:29,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:33:01] 2025-11-27 15:32:29,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,098 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:33:01] 2025-11-27 15:32:29,098 | INFO     | job 6891106042 has completed (purged errors)
[2025-11-27 10:33:01] 2025-11-27 15:32:29,098 | INFO     | overall cleanup function is called
[2025-11-27 10:33:01] 2025-11-27 15:32:30,119 | INFO     | --- collectZombieJob: --- 10, [3802545]
[2025-11-27 10:33:01] 2025-11-27 15:32:30,119 | INFO     | zombie collector waiting for pid 3802545
[2025-11-27 10:33:01] 2025-11-27 15:32:30,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:33:01] 2025-11-27 15:32:30,119 | INFO     | collected zombie processes
[2025-11-27 10:33:01] 2025-11-27 15:32:30,119 | INFO     | will attempt to kill all subprocesses of pid=3802545
[2025-11-27 10:33:01] 2025-11-27 15:32:30,396 | INFO     | process IDs to be killed: [3802545] (in reverse order)
[2025-11-27 10:33:01] 2025-11-27 15:32:30,464 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:33:01] 2025-11-27 15:32:30,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:33:01] 2025-11-27 15:32:30,472 | INFO     | did not find any defunct processes belonging to 3802545
[2025-11-27 10:33:01] 2025-11-27 15:32:30,482 | INFO     | did not find any defunct processes belonging to 3802545
[2025-11-27 10:33:01] 2025-11-27 15:32:30,483 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:33:01] 2025-11-27 15:32:30,484 | INFO     | ready for new job
[2025-11-27 10:33:01] 2025-11-27 15:32:30,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:33:01] 2025-11-27 15:32:30,494 | INFO     | ***************************************
[2025-11-27 10:33:01] 2025-11-27 15:32:30,494 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:33:01] 2025-11-27 15:32:30,494 | INFO     | ***************************************
[2025-11-27 10:33:01] 2025-11-27 15:32:30,494 | INFO     | 
[2025-11-27 10:33:01] 2025-11-27 15:32:30,496 | INFO     | architecture information:
[2025-11-27 10:33:01] 2025-11-27 15:32:30,497 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:33:01] 2025-11-27 15:32:30,515 | INFO     | cat /etc/os-release:
[2025-11-27 10:33:01] NAME="CentOS Linux"
[2025-11-27 10:33:01] VERSION="7 (Core)"
[2025-11-27 10:33:01] ID="centos"
[2025-11-27 10:33:01] ID_LIKE="rhel fedora"
[2025-11-27 10:33:01] VERSION_ID="7"
[2025-11-27 10:33:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:33:01] ANSI_COLOR="0;31"
[2025-11-27 10:33:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:33:01] HOME_URL="https://www.centos.org/"
[2025-11-27 10:33:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:33:01] 
[2025-11-27 10:33:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:33:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:33:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:33:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:33:01] 
[2025-11-27 10:33:01] 2025-11-27 15:32:30,516 | INFO     | ***************************************
[2025-11-27 10:33:01] 2025-11-27 15:32:31,020 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 10:33:01] 2025-11-27 15:32:31,085 | INFO     | sufficient remaining disk space (49348083712 B)
[2025-11-27 10:33:01] 2025-11-27 15:32:31,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:33:01] 2025-11-27 15:32:31,085 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:33:01] 2025-11-27 15:32:31,086 | INFO     | update_server=False
[2025-11-27 10:33:01] 2025-11-27 15:32:31,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:33:01] 2025-11-27 15:32:31,442 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:33:01] 2025-11-27 15:32:31,442 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:33:01] 2025-11-27 15:32:31,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:33:01] 2025-11-27 15:32:31,443 | INFO     | will abort loop
[2025-11-27 10:33:01] 2025-11-27 15:32:31,540 | INFO     | all data control threads have been joined
[2025-11-27 10:33:01] 2025-11-27 15:32:31,684 | INFO     | all payload control threads have been joined
[2025-11-27 10:33:01] 2025-11-27 15:32:31,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:33:01] 2025-11-27 15:32:32,092 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,139 | INFO     | [job] validate thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,343 | INFO     | all job control threads have been joined
[2025-11-27 10:33:01] 2025-11-27 15:32:32,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,423 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,449 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,546 | INFO     | [data] control thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,565 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,566 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,690 | INFO     | [payload] control thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:32,981 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:33,349 | INFO     | [job] control thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:33,359 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:33,406 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:34,002 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:34,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:33:01] 2025-11-27 15:32:34,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:33:01] 2025-11-27 15:32:35,091 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:38,227 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:33:01] 2025-11-27 15:32:53,293 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:33:01] 2025-11-27 15:32:54,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139836463474496)>', '<ExcThread(monitor, started 139836098844416)>']
[2025-11-27 10:33:01] 2025-11-27 15:32:59,397 | INFO     | all workflow threads have been joined
[2025-11-27 10:33:01] 2025-11-27 15:32:59,397 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:33:01] 2025-11-27 15:32:59,397 | INFO     | traces error code: 0
[2025-11-27 10:33:01] 2025-11-27 15:32:59,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:33:01] 2025-11-27 15:33:00,617 | INFO     | PID=3794564 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:33:01] 2025-11-27 15:33:00,617 | INFO     | .. there are 8 such processes running
[2025-11-27 10:33:01] 2025-11-27 15:33:00,619 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:33:01] 2025-11-27 15:33:00,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:33:01] 2025-11-27 15:33:00,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:33:01] 2025-11-27 15:33:00,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:33:01] 2025-11-27 15:33:00,619 | INFO     | [monitor] control thread has ended
[2025-11-27 10:33:01] 2025-11-27 15:33:00,811 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:33:01] 2025-11-27 15:33:00,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:33:01] 2025-11-27 15:33:00,818 [wrapper] pilotpid: 3794564
[2025-11-27 10:33:01] 2025-11-27 15:33:00,821 [wrapper] Pilot exit status: 0
[2025-11-27 10:33:01] 2025-11-27 15:33:00,839 [wrapper] pandaids: 6891106042
[2025-11-27 10:33:01] 2025-11-27 15:33:00,890 [wrapper] cleanup supervisor_pilot 2600505 3794565
[2025-11-27 10:33:01] 2025-11-27 15:33:00,896 [wrapper] Test setup, not cleaning
[2025-11-27 10:33:01] 2025-11-27 15:33:00,900 [wrapper] apfmon messages muted
[2025-11-27 10:33:01] 2025-11-27 15:33:00,904 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:33:01] 2025-11-27 15:33:00,908 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:33:01]  *** Error codes and diagnostics ***
[2025-11-27 10:33:01]     "exeErrorCode": 0,
[2025-11-27 10:33:01]     "exeErrorDiag": "",
[2025-11-27 10:33:01]     "pilotErrorCode": 0,
[2025-11-27 10:33:01]     "pilotErrorDiag": "",
[2025-11-27 10:33:01]  *** Listing of results directory ***
[2025-11-27 10:33:01] total 1328036
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-27 10:33:01] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:33:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:24 run_atlas
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:24 job.xml
[2025-11-27 10:33:01] -rw-r--r--. 2 boincer umatlas 410071623 Nov 26 00:24 EVNT.47483658._000250.pool.root.1
[2025-11-27 10:33:01] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:24 start_atlas.sh
[2025-11-27 10:33:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:24 shared
[2025-11-27 10:33:01] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:24 input.tar.gz
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:24 boinc_lockfile
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:24 pandaJob.out
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas    991877 Nov 26 00:25 agis_schedconf.cvmfs.json
[2025-11-27 10:33:01] drwx------. 5 boincer umatlas      4096 Nov 26 00:25 pilot3
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:04 boinc_task_state.xml
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 10:29 init_data.xml
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas 907541001 Nov 27 10:31 HITS.47483661._002193.pool.root.1
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas      1058 Nov 27 10:32 memory_monitor_summary.json
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas   3031796 Nov 27 10:32 log.47483661._002193.job.log.tgz.1
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas      8623 Nov 27 10:32 heartbeat.json
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:32 wrapper_checkpoint.txt
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas        95 Nov 27 10:33 pilot_heartbeat.json
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas       822 Nov 27 10:33 pilotlog.txt
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas  16157664 Nov 27 10:33 log.47483661._002193.job.log.1
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas       353 Nov 27 10:33 output.list
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:33 boinc_mmap_file
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:33 runtime_log
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas  19210240 Nov 27 10:33 result.tar.gz
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas      8705 Nov 27 10:33 runtime_log.err
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas       663 Nov 27 10:33 HxZKDmfrUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmp8qMDmDlZoYm.diag
[2025-11-27 10:33:01] -rw-r--r--. 1 boincer umatlas     21366 Nov 27 10:33 stderr.txt
[2025-11-27 10:33:01] HITS file was successfully produced:
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas 907541001 Nov 27 10:31 shared/HITS.pool.root.1
[2025-11-27 10:33:01]  *** Contents of shared directory: ***
[2025-11-27 10:33:01] total 1306100
[2025-11-27 10:33:01] -rw-r--r--. 2 boincer umatlas 410071623 Nov 26 00:24 ATLAS.root_0
[2025-11-27 10:33:01] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:24 start_atlas.sh
[2025-11-27 10:33:01] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:24 input.tar.gz
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas 907541001 Nov 27 10:31 HITS.pool.root.1
[2025-11-27 10:33:01] -rw-------. 1 boincer umatlas  19210240 Nov 27 10:33 result.tar.gz
10:33:02 (3790348): run_atlas exited; CPU time 311900.826144
10:33:02 (3790348): called boinc_finish(0)

</stderr_txt>
]]>

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