Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:52 (3416024): wrapper (7.7.26015): starting
00:04:52 (3416024): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:52] Arguments: --nthreads 9
[2025-11-26 00:04:52] Threads: 9
[2025-11-26 00:04:52] Checking for CVMFS
[2025-11-26 00:04:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:54] 2.13.2.0 8902 35399 302504 153309 2 326 36139626 40960000 23652 16776704 0 70652508 99.614 73520149 35938 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:54] CVMFS is ok
[2025-11-26 00:04:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:54] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:54] Checking for apptainer binary...
[2025-11-26 00:04:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:54] Running /usr/bin/apptainer --version
[2025-11-26 00:04:54] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:54] c-211-35-2.aglt2.org
[2025-11-26 00:04:54] apptainer works
[2025-11-26 00:04:54] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:54] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:54] Starting ATLAS job with PandaID=6896219332
[2025-11-26 00:04:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:02:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:02:46] 2025-11-27 01:57:40,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,672 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:02:46] 2025-11-27 01:57:40,684 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2564.301572916666
[2025-11-27 00:02:46] 2025-11-27 01:57:40,701 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896219332/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,702 | INFO     | extracted standard info from prmon json
[2025-11-27 00:02:46] 2025-11-27 01:57:40,702 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:02:46] 2025-11-27 01:57:40,703 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:02:46] 2025-11-27 01:57:40,723 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:02:46] 2025-11-27 01:57:40,725 | INFO     | sum of square deviations: 575715458017.8339
[2025-11-27 00:02:46] 2025-11-27 01:57:40,824 | INFO     | sum of deviations: 4014246488200.078
[2025-11-27 00:02:46] 2025-11-27 01:57:40,824 | INFO     | mean x: 1764171152.5777054
[2025-11-27 00:02:46] 2025-11-27 01:57:40,824 | INFO     | mean y: 3072448.6013018712
[2025-11-27 00:02:46] 2025-11-27 01:57:40,824 | INFO     | intersect: -12297826815.422916
[2025-11-27 00:02:46] 2025-11-27 01:57:40,826 | INFO     | chi2: 13.165743905396187
[2025-11-27 00:02:46] 2025-11-27 01:57:40,827 | INFO     | sum of square deviations: 568720280582.6239
[2025-11-27 00:02:46] 2025-11-27 01:57:40,857 | INFO     | sum of deviations: 4447426956284.479
[2025-11-27 00:02:46] 2025-11-27 01:57:40,857 | INFO     | mean x: 1764171000.0964053
[2025-11-27 00:02:46] 2025-11-27 01:57:40,858 | INFO     | mean y: 3081889.470588235
[2025-11-27 00:02:46] 2025-11-27 01:57:40,858 | INFO     | intersect: -13792841922.647144
[2025-11-27 00:02:46] 2025-11-27 01:57:40,859 | INFO     | chi2: 10.075637954198134
[2025-11-27 00:02:46] 2025-11-27 01:57:40,859 | INFO     | current chi2=10.075637954198134 (change=23.470804030538105 %)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,860 | INFO     | right removable region: 1223
[2025-11-27 00:02:46] 2025-11-27 01:57:40,861 | INFO     | sum of square deviations: 568713098590.9418
[2025-11-27 00:02:46] 2025-11-27 01:57:40,891 | INFO     | sum of deviations: 3486137106601.706
[2025-11-27 00:02:46] 2025-11-27 01:57:40,891 | INFO     | mean x: 1764171305.137255
[2025-11-27 00:02:46] 2025-11-27 01:57:40,891 | INFO     | mean y: 3083953.3946078434
[2025-11-27 00:02:46] 2025-11-27 01:57:40,891 | INFO     | intersect: -10811056013.626898
[2025-11-27 00:02:46] 2025-11-27 01:57:40,893 | INFO     | chi2: 8.994405515733249
[2025-11-27 00:02:46] 2025-11-27 01:57:40,893 | INFO     | current chi2=8.994405515733249 (change=31.68327152370972 %)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,895 | INFO     | sum of square deviations: 561767744903.6947
[2025-11-27 00:02:46] 2025-11-27 01:57:40,924 | INFO     | sum of deviations: 3084906232190.3516
[2025-11-27 00:02:46] 2025-11-27 01:57:40,925 | INFO     | mean x: 1764171457.6964724
[2025-11-27 00:02:46] 2025-11-27 01:57:40,925 | INFO     | mean y: 3092763.430680886
[2025-11-27 00:02:46] 2025-11-27 01:57:40,925 | INFO     | intersect: -9684724975.968317
[2025-11-27 00:02:46] 2025-11-27 01:57:40,926 | INFO     | chi2: 6.696383799996406
[2025-11-27 00:02:46] 2025-11-27 01:57:40,927 | INFO     | current chi2=6.696383799996406 (change=25.54945640061573 %)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,928 | INFO     | sum of square deviations: 554880576641.2465
[2025-11-27 00:02:46] 2025-11-27 01:57:40,958 | INFO     | sum of deviations: 2954762011705.3325
[2025-11-27 00:02:46] 2025-11-27 01:57:40,958 | INFO     | mean x: 1764171610.2397034
[2025-11-27 00:02:46] 2025-11-27 01:57:40,958 | INFO     | mean y: 3095645.586490939
[2025-11-27 00:02:46] 2025-11-27 01:57:40,958 | INFO     | intersect: -9391191117.194782
[2025-11-27 00:02:46] 2025-11-27 01:57:40,960 | INFO     | chi2: 6.564324904566524
[2025-11-27 00:02:46] 2025-11-27 01:57:40,960 | INFO     | current chi2=6.564324904566524 (change=1.972092690236078 %)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,960 | INFO     | left removable region: 30
[2025-11-27 00:02:46] 2025-11-27 01:57:40,962 | INFO     | sum of square deviations: 526576225870.4959
[2025-11-27 00:02:46] 2025-11-27 01:57:40,990 | INFO     | sum of deviations: 3221837018005.2715
[2025-11-27 00:02:46] 2025-11-27 01:57:40,991 | INFO     | mean x: 1764171884.8860016
[2025-11-27 00:02:46] 2025-11-27 01:57:40,991 | INFO     | mean y: 3113981.8843252305
[2025-11-27 00:02:46] 2025-11-27 01:57:40,991 | INFO     | intersect: -10790905963.573153
[2025-11-27 00:02:46] 2025-11-27 01:57:40,993 | INFO     | chi2: 2.365843804580647
[2025-11-27 00:02:46] 2025-11-27 01:57:40,993 | INFO     | current memory leak: 6.12 B/s (using 1193 data points, chi2=2.37)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,994 | INFO     | could have reported an average CPU frequency of 2642 MHz (44 samples)
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | ..............................
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . Timing measurements:
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . get job = 0 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . initial setup = 6 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . payload setup = 43 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . stage-in = 0 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . payload execution = 74968 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . stage-out = 5 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | . log creation = 1 s
[2025-11-27 00:02:46] 2025-11-27 01:57:40,995 | INFO     | ..............................
[2025-11-27 00:02:46] 2025-11-27 01:57:41,279 | INFO     | 
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | job summary report
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | --------------------------------------------------
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | PanDA job id: 6896219332
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | task id: 47556161
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | errors: (none)
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | pilot state: finished 
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | transexitcode: 0
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | exeerrorcode: 0
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | exeerrordiag: 
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | exitcode: 0
[2025-11-27 00:02:46] 2025-11-27 01:57:41,280 | INFO     | exitmsg: OK
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | cpuconsumptiontime: 263635 s
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | nevents: 1000
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | neventsw: 0
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | pid: 3442197
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | pgrp: 3442197
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | corecount: 9
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | event service: False
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | sizes: {0: 2284085, 1: 2284169, 2: 2284368, 13: 2284368, 24: 2284424, 26: 2284714, 36: 2284870, 75016: 2343781, 75023: 2352775, 75026: 2352831, 75046: 2353077}
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | --------------------------------------------------
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | 
[2025-11-27 00:02:46] 2025-11-27 01:57:41,281 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:02:46] 2025-11-27 01:57:41,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:02:46] 2025-11-27 01:57:41,313 | INFO     | job 6896219332 has completed (purged errors)
[2025-11-27 00:02:46] 2025-11-27 01:57:41,313 | INFO     | overall cleanup function is called
[2025-11-27 00:02:46] 2025-11-27 01:57:42,386 | INFO     | --- collectZombieJob: --- 10, [3442197]
[2025-11-27 00:02:46] 2025-11-27 01:57:42,387 | INFO     | zombie collector waiting for pid 3442197
[2025-11-27 00:02:46] 2025-11-27 01:57:42,387 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:02:46] 2025-11-27 01:57:42,387 | INFO     | collected zombie processes
[2025-11-27 00:02:46] 2025-11-27 01:57:42,387 | INFO     | will attempt to kill all subprocesses of pid=3442197
[2025-11-27 00:02:46] 2025-11-27 01:57:44,177 | INFO     | process IDs to be killed: [3442197] (in reverse order)
[2025-11-27 00:02:46] 2025-11-27 01:57:44,537 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:02:46] 2025-11-27 01:57:44,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:02:46] 2025-11-27 01:57:44,609 | INFO     | did not find any defunct processes belonging to 3442197
[2025-11-27 00:02:46] 2025-11-27 01:57:44,704 | INFO     | did not find any defunct processes belonging to 3442197
[2025-11-27 00:02:46] 2025-11-27 01:57:44,728 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:02:46] 2025-11-27 01:57:44,729 | INFO     | ready for new job
[2025-11-27 00:02:46] 2025-11-27 01:57:44,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:02:46] 2025-11-27 01:57:44,768 | INFO     | ***************************************
[2025-11-27 00:02:46] 2025-11-27 01:57:44,768 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:02:46] 2025-11-27 01:57:44,768 | INFO     | ***************************************
[2025-11-27 00:02:46] 2025-11-27 01:57:44,768 | INFO     | 
[2025-11-27 00:02:46] 2025-11-27 01:57:44,794 | INFO     | architecture information:
[2025-11-27 00:02:46] 2025-11-27 01:57:44,816 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:02:46] 2025-11-27 01:57:44,894 | INFO     | cat /etc/os-release:
[2025-11-27 00:02:46] NAME="CentOS Linux"
[2025-11-27 00:02:46] VERSION="7 (Core)"
[2025-11-27 00:02:46] ID="centos"
[2025-11-27 00:02:46] ID_LIKE="rhel fedora"
[2025-11-27 00:02:46] VERSION_ID="7"
[2025-11-27 00:02:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:02:46] ANSI_COLOR="0;31"
[2025-11-27 00:02:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:02:46] HOME_URL="https://www.centos.org/"
[2025-11-27 00:02:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:02:46] 
[2025-11-27 00:02:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:02:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:02:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:02:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:02:46] 
[2025-11-27 00:02:46] 2025-11-27 01:57:44,895 | INFO     | ***************************************
[2025-11-27 00:02:46] 2025-11-27 01:57:45,399 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 00:02:46] 2025-11-27 01:57:45,459 | INFO     | sufficient remaining disk space (114282201088 B)
[2025-11-27 00:02:46] 2025-11-27 01:57:45,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:02:46] 2025-11-27 01:57:45,460 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:02:46] 2025-11-27 01:57:45,460 | INFO     | update_server=False
[2025-11-27 00:02:46] 2025-11-27 01:57:45,460 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:02:46] 2025-11-27 01:57:45,659 | INFO     | all payload control threads have been joined
[2025-11-27 00:02:46] 2025-11-27 01:57:45,660 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 00:02:46] 2025-11-27 01:57:45,661 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 00:02:46] 2025-11-27 01:57:45,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:02:46] 2025-11-27 01:57:45,661 | INFO     | will abort loop
[2025-11-27 00:02:46] 2025-11-27 01:57:45,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:02:46] 2025-11-27 01:57:45,757 | INFO     | all data control threads have been joined
[2025-11-27 00:02:46] 2025-11-27 01:57:46,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:02:46] 2025-11-27 01:57:46,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:02:46] 2025-11-27 01:57:46,485 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:46,582 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:46,615 | INFO     | [job] validate thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:46,666 | INFO     | [payload] control thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:46,666 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:46,729 | INFO     | all job control threads have been joined
[2025-11-27 00:02:46] 2025-11-27 01:57:46,763 | INFO     | [data] control thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,091 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,117 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,131 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,356 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,735 | INFO     | [job] control thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:47,761 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:48,020 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:57:49,743 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:02:46] 2025-11-27 01:58:08,439 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:02:46] 2025-11-27 01:58:08,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544806737728)>', '<ExcThread(monitor, started 140544432903936)>']
[2025-11-27 00:02:46] 2025-11-27 01:58:13,859 | INFO     | all workflow threads have been joined
[2025-11-27 00:02:46] 2025-11-27 01:58:13,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:02:46] 2025-11-27 01:58:13,860 | INFO     | traces error code: 0
[2025-11-27 00:02:46] 2025-11-27 01:58:13,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:02:46] 2025-11-27 01:58:13,976 | INFO     | PID=3423343 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:02:46] 2025-11-27 01:58:13,977 | INFO     | .. there are 27 such processes running
[2025-11-27 00:02:46] 2025-11-27 01:58:13,977 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:02:46] 2025-11-27 01:58:13,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:02:46] 2025-11-27 01:58:13,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:02:46] 2025-11-27 01:58:13,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:02:46] 2025-11-27 01:58:13,977 | INFO     | [monitor] control thread has ended
[2025-11-27 00:02:46] 2025-11-27 01:58:14,740 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:02:46] 2025-11-27 01:58:14,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:02:46] 2025-11-27 01:58:14,778 [wrapper] pilotpid: 3423343
[2025-11-27 00:02:46] 2025-11-27 01:58:14,825 [wrapper] Pilot exit status: 0
[2025-11-27 00:02:46] 2025-11-27 01:58:14,906 [wrapper] pandaids: 6896219332
[2025-11-27 00:02:46] 2025-11-27 01:58:14,993 [wrapper] cleanup supervisor_pilot 2444188 3423344
[2025-11-27 00:02:46] 2025-11-27 01:58:14,998 [wrapper] Test setup, not cleaning
[2025-11-27 00:02:46] 2025-11-27 01:58:15,001 [wrapper] apfmon messages muted
[2025-11-27 00:02:46] 2025-11-27 01:58:15,004 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:02:46] 2025-11-27 01:58:15,007 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:02:46]  *** Error codes and diagnostics ***
[2025-11-27 00:02:46]     "exeErrorCode": 0,
[2025-11-27 00:02:46]     "exeErrorDiag": "",
[2025-11-27 00:02:46]     "pilotErrorCode": 0,
[2025-11-27 00:02:46]     "pilotErrorDiag": "",
[2025-11-27 00:02:46]  *** Listing of results directory ***
[2025-11-27 00:02:46] total 1326200
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:57 queuedata.json
[2025-11-27 00:02:46] -rwx------. 1 boincer umatlas     36292 Nov 24 14:58 runpilot2-wrapper.sh
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:02:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 00:02:46] -rw-r--r--. 2 boincer umatlas 408296200 Nov 26 00:04 EVNT.47483658._002061.pool.root.1
[2025-11-27 00:02:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 00:02:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 00:02:46] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:04 input.tar.gz
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:04 pandaJob.out
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 00:02:46] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas       531 Nov 26 20:39 boinc_task_state.xml
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas 922569379 Nov 26 20:56 HITS.47556161._000449.pool.root.1
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas      1059 Nov 26 20:57 memory_monitor_summary.json
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas   2399243 Nov 26 20:57 log.47556161._000449.job.log.tgz.1
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas        95 Nov 26 20:57 pilot_heartbeat.json
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas      8637 Nov 26 20:57 heartbeat.json
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas       823 Nov 26 20:58 pilotlog.txt
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas   9223865 Nov 26 20:58 log.47556161._000449.job.log.1
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas       353 Nov 26 20:58 output.list
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:58 runtime_log
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas  11642880 Nov 26 20:58 result.tar.gz
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 20:58 runtime_log.err
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas       662 Nov 26 20:58 LAsMDm3srh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4tLKDmwKgX6n.diag
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas      6883 Nov 27 00:02 init_data.xml
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas        28 Nov 27 00:02 wrapper_checkpoint.txt
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:02 boinc_mmap_file
[2025-11-27 00:02:46] -rw-r--r--. 1 boincer umatlas     21371 Nov 27 00:02 stderr.txt
[2025-11-27 00:02:46] HITS file was successfully produced:
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas 922569379 Nov 26 20:56 shared/HITS.pool.root.1
[2025-11-27 00:02:46]  *** Contents of shared directory: ***
[2025-11-27 00:02:46] total 1311652
[2025-11-27 00:02:46] -rw-r--r--. 2 boincer umatlas 408296200 Nov 26 00:04 ATLAS.root_0
[2025-11-27 00:02:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 00:02:46] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:04 input.tar.gz
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas 922569379 Nov 26 20:56 HITS.pool.root.1
[2025-11-27 00:02:46] -rw-------. 1 boincer umatlas  11642880 Nov 26 20:58 result.tar.gz
00:02:47 (3416024): run_atlas exited; CPU time 265820.149702
00:02:47 (3416024): called boinc_finish(0)

</stderr_txt>
]]>

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