Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:53 (3707258): wrapper (7.7.26015): starting
00:12:53 (3707258): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:53] Arguments: --nthreads 8
[2025-11-26 00:12:53] Threads: 8
[2025-11-26 00:12:53] Checking for CVMFS
[2025-11-26 00:12:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:55] 2.13.3.0 11836 28135 344636 153310 3 106 18848501 32935937 37738 16776704 0 120752557 99.536 135577344 35740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:12:55] CVMFS is ok
[2025-11-26 00:12:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:55] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:55] Checking for apptainer binary...
[2025-11-26 00:12:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:55] Running /usr/bin/apptainer --version
[2025-11-26 00:12:55] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:56] c6-2-11-1.aglt2.org
[2025-11-26 00:12:56] apptainer works
[2025-11-26 00:12:56] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:56] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:56] Starting ATLAS job with PandaID=6891107027
[2025-11-26 00:12:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:59:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:59:32] 2025-11-28 01:58:46,369 | INFO     | time since job start (161075s) is within the limit (172800.0s)
[2025-11-27 20:59:32] 2025-11-28 01:58:47,912 | INFO     | monitor loop #8873: job 0:6891107027 is in state 'finished'
[2025-11-27 20:59:32] 2025-11-28 01:58:47,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:59:32] 2025-11-28 01:58:48,383 | INFO     | time since job start (161077s) is within the limit (172800.0s)
[2025-11-27 20:59:32] 2025-11-28 01:58:50,393 | INFO     | time since job start (161079s) is within the limit (172800.0s)
[2025-11-27 20:59:32] 2025-11-28 01:58:50,460 | INFO     | monitor loop #8874: job 0:6891107027 is in state 'finished'
[2025-11-27 20:59:32] 2025-11-28 01:58:50,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:59:32] 2025-11-28 01:58:52,424 | INFO     | time since job start (161081s) is within the limit (172800.0s)
[2025-11-27 20:59:32] 2025-11-28 01:58:52,988 | INFO     | monitor loop #8875: job 0:6891107027 is in state 'finished'
[2025-11-27 20:59:32] 2025-11-28 01:58:52,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:59:32] 2025-11-28 01:58:54,049 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:59:32] 2025-11-28 01:58:54,173 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2615.863072916667
[2025-11-27 20:59:32] 2025-11-28 01:58:54,286 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6891107027/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:59:32] 2025-11-28 01:58:54,287 | INFO     | extracted standard info from prmon json
[2025-11-27 20:59:32] 2025-11-28 01:58:54,288 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:59:32] 2025-11-28 01:58:54,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:59:32] 2025-11-28 01:58:54,357 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:59:32] 2025-11-28 01:58:54,361 | INFO     | sum of square deviations: 5691978104998.935
[2025-11-27 20:59:32] 2025-11-28 01:58:54,443 | INFO     | time since job start (161083s) is within the limit (172800.0s)
[2025-11-27 20:59:32] 2025-11-28 01:58:54,924 | INFO     | sum of deviations: 24940371125797.51
[2025-11-27 20:59:32] 2025-11-28 01:58:54,924 | INFO     | mean x: 1764214650.3252463
[2025-11-27 20:59:32] 2025-11-28 01:58:54,925 | INFO     | mean y: 2896699.491281274
[2025-11-27 20:59:32] 2025-11-28 01:58:54,925 | INFO     | intersect: -7727310148.289445
[2025-11-27 20:59:32] 2025-11-28 01:58:54,932 | INFO     | chi2: 24.235313699387373
[2025-11-27 20:59:32] 2025-11-28 01:58:54,940 | INFO     | sum of square deviations: 5659674242053.139
[2025-11-27 20:59:32] 2025-11-28 01:58:55,348 | INFO     | sum of deviations: 25857148318145.74
[2025-11-27 20:59:32] 2025-11-28 01:58:55,349 | INFO     | mean x: 1764214497.8325105
[2025-11-27 20:59:32] 2025-11-28 01:58:55,349 | INFO     | mean y: 2901026.647930118
[2025-11-27 20:59:32] 2025-11-28 01:58:55,349 | INFO     | intersect: -8057201725.649298
[2025-11-27 20:59:32] 2025-11-28 01:58:55,352 | INFO     | chi2: 20.874552872551522
[2025-11-27 20:59:32] 2025-11-28 01:58:55,352 | INFO     | current chi2=20.874552872551522 (change=13.867205799447953 %)
[2025-11-27 20:59:32] 2025-11-28 01:58:55,352 | INFO     | right removable region: 2632
[2025-11-27 20:59:32] 2025-11-28 01:58:55,356 | INFO     | sum of square deviations: 5659668086543.141
[2025-11-27 20:59:32] 2025-11-28 01:58:55,606 | INFO     | monitor loop #8876: job 0:6891107027 is in state 'finished'
[2025-11-27 20:59:32] 2025-11-28 01:58:55,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:59:32] 2025-11-28 01:58:55,661 | INFO     | sum of deviations: 23843542717530.168
[2025-11-27 20:59:32] 2025-11-28 01:58:55,661 | INFO     | mean x: 1764214802.8325105
[2025-11-27 20:59:32] 2025-11-28 01:58:55,661 | INFO     | mean y: 2901876.385871629
[2025-11-27 20:59:32] 2025-11-28 01:58:55,661 | INFO     | intersect: -7429535922.26407
[2025-11-27 20:59:32] 2025-11-28 01:58:55,669 | INFO     | chi2: 19.787447158476525
[2025-11-27 20:59:32] 2025-11-28 01:58:55,669 | INFO     | current chi2=19.787447158476525 (change=18.35283254874181 %)
[2025-11-27 20:59:32] 2025-11-28 01:58:55,669 | INFO     | left removable region: 10
[2025-11-27 20:59:32] 2025-11-28 01:58:55,677 | INFO     | sum of square deviations: 5589024831648.158
[2025-11-27 20:59:32] 2025-11-28 01:58:56,008 | INFO     | sum of deviations: 24027499614331.742
[2025-11-27 20:59:32] 2025-11-28 01:58:56,012 | INFO     | mean x: 1764214772.3470633
[2025-11-27 20:59:32] 2025-11-28 01:58:56,013 | INFO     | mean y: 2911386.3135011443
[2025-11-27 20:59:32] 2025-11-28 01:58:56,013 | INFO     | intersect: -7581536892.057639
[2025-11-27 20:59:32] 2025-11-28 01:58:56,016 | INFO     | chi2: 12.8995755586791
[2025-11-27 20:59:32] 2025-11-28 01:58:56,017 | INFO     | current memory leak: 4.30 B/s (using 2622 data points, chi2=12.90)
[2025-11-27 20:59:32] 2025-11-28 01:58:56,024 | INFO     | could have reported an average CPU frequency of 2654 MHz (91 samples)
[2025-11-27 20:59:32] 2025-11-28 01:58:56,024 | INFO     | ..............................
[2025-11-27 20:59:32] 2025-11-28 01:58:56,024 | INFO     | . Timing measurements:
[2025-11-27 20:59:32] 2025-11-28 01:58:56,024 | INFO     | . get job = 0 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,024 | INFO     | . initial setup = 7 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,024 | INFO     | . payload setup = 56 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,025 | INFO     | . stage-in = 0 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,025 | INFO     | . payload execution = 160906 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,025 | INFO     | . stage-out = 8 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,025 | INFO     | . log creation = 1 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,025 | INFO     | ..............................
[2025-11-27 20:59:32] 2025-11-28 01:58:56,231 | INFO     | 
[2025-11-27 20:59:32] 2025-11-28 01:58:56,231 | INFO     | job summary report
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | --------------------------------------------------
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | PanDA job id: 6891107027
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | task id: 47483661
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | errors: (none)
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | pilot state: finished 
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | transexitcode: 0
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | exeerrorcode: 0
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | exeerrordiag: 
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | exitcode: 0
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | exitmsg: OK
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | cpuconsumptiontime: 276899 s
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | nevents: 1000
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | neventsw: 0
[2025-11-27 20:59:32] 2025-11-28 01:58:56,232 | INFO     | pid: 3737129
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | pgrp: 3737129
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | corecount: 8
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | event service: False
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | sizes: {0: 2283476, 1: 2284162, 2: 2284361, 13: 2284361, 24: 2284417, 36: 2284835, 47: 2284863, 160967: 2382460, 160976: 2391512, 161005: 2391702}
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | --------------------------------------------------
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | 
[2025-11-27 20:59:32] 2025-11-28 01:58:56,233 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 20:59:32] 2025-11-28 01:58:56,315 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:59:32] 2025-11-28 01:58:56,317 | INFO     | job 6891107027 has completed (purged errors)
[2025-11-27 20:59:32] 2025-11-28 01:58:56,318 | INFO     | overall cleanup function is called
[2025-11-27 20:59:32] 2025-11-28 01:58:57,378 | INFO     | --- collectZombieJob: --- 10, [3737129]
[2025-11-27 20:59:32] 2025-11-28 01:58:57,378 | INFO     | zombie collector waiting for pid 3737129
[2025-11-27 20:59:32] 2025-11-28 01:58:57,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:59:32] 2025-11-28 01:58:57,378 | INFO     | collected zombie processes
[2025-11-27 20:59:32] 2025-11-28 01:58:57,379 | INFO     | will attempt to kill all subprocesses of pid=3737129
[2025-11-27 20:59:32] 2025-11-28 01:59:01,883 | INFO     | process IDs to be killed: [3737129] (in reverse order)
[2025-11-27 20:59:32] 2025-11-28 01:59:02,131 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:59:32] 2025-11-28 01:59:02,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:59:32] 2025-11-28 01:59:02,154 | INFO     | did not find any defunct processes belonging to 3737129
[2025-11-27 20:59:32] 2025-11-28 01:59:02,254 | INFO     | did not find any defunct processes belonging to 3737129
[2025-11-27 20:59:32] 2025-11-28 01:59:02,268 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:59:32] 2025-11-28 01:59:02,269 | INFO     | ready for new job
[2025-11-27 20:59:32] 2025-11-28 01:59:02,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:59:32] 2025-11-28 01:59:02,383 | INFO     | ***************************************
[2025-11-27 20:59:32] 2025-11-28 01:59:02,384 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:59:32] 2025-11-28 01:59:02,384 | INFO     | ***************************************
[2025-11-27 20:59:32] 2025-11-28 01:59:02,384 | INFO     | 
[2025-11-27 20:59:32] 2025-11-28 01:59:02,524 | INFO     | architecture information:
[2025-11-27 20:59:32] 2025-11-28 01:59:02,541 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:59:32] 2025-11-28 01:59:02,628 | INFO     | cat /etc/os-release:
[2025-11-27 20:59:32] NAME="CentOS Linux"
[2025-11-27 20:59:32] VERSION="7 (Core)"
[2025-11-27 20:59:32] ID="centos"
[2025-11-27 20:59:32] ID_LIKE="rhel fedora"
[2025-11-27 20:59:32] VERSION_ID="7"
[2025-11-27 20:59:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:59:32] ANSI_COLOR="0;31"
[2025-11-27 20:59:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:59:32] HOME_URL="https://www.centos.org/"
[2025-11-27 20:59:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:59:32] 
[2025-11-27 20:59:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:59:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:59:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:59:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:59:32] 
[2025-11-27 20:59:32] 2025-11-28 01:59:02,629 | INFO     | ***************************************
[2025-11-27 20:59:32] 2025-11-28 01:59:03,157 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 20:59:32] 2025-11-28 01:59:03,232 | INFO     | sufficient remaining disk space (89594527744 B)
[2025-11-27 20:59:32] 2025-11-28 01:59:03,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:59:32] 2025-11-28 01:59:03,233 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:59:32] 2025-11-28 01:59:03,233 | INFO     | update_server=False
[2025-11-27 20:59:32] 2025-11-28 01:59:03,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:59:32] 2025-11-28 01:59:03,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:59:32] 2025-11-28 01:59:03,293 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 20:59:32] 2025-11-28 01:59:03,293 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 20:59:32] 2025-11-28 01:59:03,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:59:32] 2025-11-28 01:59:03,294 | INFO     | will abort loop
[2025-11-27 20:59:32] 2025-11-28 01:59:03,945 | INFO     | all job control threads have been joined
[2025-11-27 20:59:32] 2025-11-28 01:59:04,039 | INFO     | all data control threads have been joined
[2025-11-27 20:59:32] 2025-11-28 01:59:04,058 | INFO     | all payload control threads have been joined
[2025-11-27 20:59:32] 2025-11-28 01:59:04,241 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,299 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,308 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,370 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:59:32] 2025-11-28 01:59:04,382 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,596 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,951 | INFO     | [job] control thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:04,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:05,060 | INFO     | [data] control thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:05,064 | INFO     | [payload] control thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:05,251 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:05,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:59:32] 2025-11-28 01:59:05,284 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:05,390 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:05,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:59:32] 2025-11-28 01:59:05,573 | INFO     | [job] validate thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:06,261 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:09,408 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:59:32] 2025-11-28 01:59:10,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780973639488)>', '<ExcThread(monitor, started 139780180408064)>']
[2025-11-27 20:59:32] 2025-11-28 01:59:15,455 | INFO     | all workflow threads have been joined
[2025-11-27 20:59:32] 2025-11-28 01:59:15,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:59:32] 2025-11-28 01:59:15,456 | INFO     | traces error code: 0
[2025-11-27 20:59:32] 2025-11-28 01:59:15,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:59:32] 2025-11-28 01:59:24,972 [wrapper] supervise_pilot (15 min periods counter: 180)
[2025-11-27 20:59:32] 2025-11-28 01:59:30,959 | INFO     | PID=3716636 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:59:32] 2025-11-28 01:59:30,960 | INFO     | .. there are 59 such processes running
[2025-11-27 20:59:32] 2025-11-28 01:59:30,960 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:59:32] 2025-11-28 01:59:30,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:59:32] 2025-11-28 01:59:30,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:59:32] 2025-11-28 01:59:30,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:59:32] 2025-11-28 01:59:30,960 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 20:59:32] 2025-11-28 01:59:30,961 | INFO     | [monitor] control thread has ended
[2025-11-27 20:59:32] 2025-11-28 01:59:31,640 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:59:32] 2025-11-28 01:59:31,685 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:59:32] 2025-11-28 01:59:31,699 [wrapper] pilotpid: 3716636
[2025-11-27 20:59:32] 2025-11-28 01:59:31,719 [wrapper] Pilot exit status: 0
[2025-11-27 20:59:32] 2025-11-28 01:59:31,808 [wrapper] pandaids: 6891107027
[2025-11-27 20:59:32] 2025-11-28 01:59:32,010 [wrapper] cleanup supervisor_pilot 2292049 3716637
[2025-11-27 20:59:32] 2025-11-28 01:59:32,023 [wrapper] Test setup, not cleaning
[2025-11-27 20:59:32] 2025-11-28 01:59:32,037 [wrapper] apfmon messages muted
[2025-11-27 20:59:32] 2025-11-28 01:59:32,066 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:59:32] 2025-11-28 01:59:32,103 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:59:32]  *** Error codes and diagnostics ***
[2025-11-27 20:59:32]     "exeErrorCode": 0,
[2025-11-27 20:59:32]     "exeErrorDiag": "",
[2025-11-27 20:59:32]     "pilotErrorCode": 0,
[2025-11-27 20:59:32]     "pilotErrorDiag": "",
[2025-11-27 20:59:32]  *** Listing of results directory ***
[2025-11-27 20:59:32] total 1348604
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 20:59:32] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:59:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-27 20:59:32] -rw-r--r--. 2 boincer umatlas 410594702 Nov 26 00:12 EVNT.47483658._000286.pool.root.1
[2025-11-27 20:59:32] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:12 start_atlas.sh
[2025-11-27 20:59:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-27 20:59:32] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:12 input.tar.gz
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:12 pandaJob.out
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas    991877 Nov 26 00:14 agis_schedconf.cvmfs.json
[2025-11-27 20:59:32] drwx------. 5 boincer umatlas      4096 Nov 26 00:14 pilot3
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:41 boinc_task_state.xml
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas 921201801 Nov 27 20:56 HITS.47483661._002559.pool.root.1
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas      1061 Nov 27 20:58 memory_monitor_summary.json
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 20:58 init_data.xml
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas   3277818 Nov 27 20:58 log.47483661._002559.job.log.tgz.1
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas        95 Nov 27 20:58 pilot_heartbeat.json
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas      8622 Nov 27 20:58 heartbeat.json
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas       893 Nov 27 20:59 pilotlog.txt
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas  19352079 Nov 27 20:59 log.47483661._002559.job.log.1
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:59 wrapper_checkpoint.txt
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas       353 Nov 27 20:59 output.list
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:59 boinc_mmap_file
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:59 runtime_log
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas  22650880 Nov 27 20:59 result.tar.gz
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas      8724 Nov 27 20:59 runtime_log.err
[2025-11-27 20:59:32] -rw-------. 1 boincer umatlas       666 Nov 27 20:59 ODvNDmmtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmETKODm1mbGOn.diag
[2025-11-27 20:59:32] -rw-r--r--. 1 boincer umatlas     21734 Nov 27 20:59 stderr.txt
[2025-11-27 20:59:33] HITS file was successfully produced:
[2025-11-27 20:59:33] -rw-------. 1 boincer umatlas 921201801 Nov 27 20:56 shared/HITS.pool.root.1
[2025-11-27 20:59:33]  *** Contents of shared directory: ***
[2025-11-27 20:59:33] total 1323308
[2025-11-27 20:59:33] -rw-r--r--. 2 boincer umatlas 410594702 Nov 26 00:12 ATLAS.root_0
[2025-11-27 20:59:33] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:12 start_atlas.sh
[2025-11-27 20:59:33] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:12 input.tar.gz
[2025-11-27 20:59:33] -rw-------. 1 boincer umatlas 921201801 Nov 27 20:56 HITS.pool.root.1
[2025-11-27 20:59:33] -rw-------. 1 boincer umatlas  22650880 Nov 27 20:59 result.tar.gz
20:59:34 (3707258): run_atlas exited; CPU time 285486.295519
20:59:34 (3707258): called boinc_finish(0)

</stderr_txt>
]]>

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