Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:01 (3230205): wrapper (7.7.26015): starting
00:05:01 (3230205): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:05:01] Arguments: --nthreads 9
[2025-11-26 00:05:01] Threads: 9
[2025-11-26 00:05:01] Checking for CVMFS
[2025-11-26 00:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:03] 2.13.2.0 6869 36183 165152 153309 2 280 35976632 40960000 17697 16776704 0 69916622 99.777 36207824 41072 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:05:03] CVMFS is ok
[2025-11-26 00:05:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:03] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:03] Checking for apptainer binary...
[2025-11-26 00:05:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:03] Running /usr/bin/apptainer --version
[2025-11-26 00:05:04] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:05] c-212-13.aglt2.org
[2025-11-26 00:05:05] apptainer works
[2025-11-26 00:05:05] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:05:05] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:05:05] Starting ATLAS job with PandaID=6891106039
[2025-11-26 00:05:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:22:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:22:23] 2025-11-27 02:49:25,485 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 22:22:23] 2025-11-27 02:49:25,492 | INFO     | executing command: lscpu
[2025-11-26 22:22:23] 2025-11-27 02:49:25,723 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 22:22:23] 2025-11-27 02:49:26,020 | INFO     | PID=3246864 has CPU usage=18.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 22:22:23] 2025-11-27 02:49:26,020 | INFO     | .. there are 19 such processes running
[2025-11-26 22:22:23] 2025-11-27 02:49:26,141 | INFO     | monitor loop #4590: job 0:6891106039 is in state 'finished'
[2025-11-26 22:22:23] 2025-11-27 02:49:26,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:22:23] 2025-11-27 02:49:27,021 | INFO     | time since job start (78174s) is within the limit (172800.0s)
[2025-11-26 22:22:23] 2025-11-27 02:49:28,645 | INFO     | monitor loop #4591: job 0:6891106039 is in state 'finished'
[2025-11-26 22:22:23] 2025-11-27 02:49:28,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:22:23] 2025-11-27 02:49:29,028 | INFO     | time since job start (78176s) is within the limit (172800.0s)
[2025-11-26 22:22:23] 2025-11-27 02:49:31,035 | INFO     | time since job start (78178s) is within the limit (172800.0s)
[2025-11-26 22:22:23] 2025-11-27 02:49:31,150 | INFO     | monitor loop #4592: job 0:6891106039 is in state 'finished'
[2025-11-26 22:22:23] 2025-11-27 02:49:31,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:22:23] 2025-11-27 02:49:32,748 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:22:23] 2025-11-27 02:49:32,776 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2898.171781250001
[2025-11-26 22:22:23] 2025-11-27 02:49:32,892 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6891106039/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:22:23] 2025-11-27 02:49:32,893 | INFO     | extracted standard info from prmon json
[2025-11-26 22:22:23] 2025-11-27 02:49:32,893 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:22:23] 2025-11-27 02:49:32,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:22:23] 2025-11-27 02:49:32,927 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:22:23] 2025-11-27 02:49:32,929 | INFO     | sum of square deviations: 648661377092.9818
[2025-11-26 22:22:23] 2025-11-27 02:49:32,964 | INFO     | sum of deviations: 5488400230127.625
[2025-11-26 22:22:23] 2025-11-27 02:49:32,965 | INFO     | mean x: 1764172776.5465207
[2025-11-26 22:22:23] 2025-11-27 02:49:32,965 | INFO     | mean y: 2989239.2752150116
[2025-11-26 22:22:23] 2025-11-27 02:49:32,965 | INFO     | intersect: -14923884187.620506
[2025-11-26 22:22:23] 2025-11-27 02:49:32,966 | INFO     | chi2: 20.665266653165858
[2025-11-26 22:22:23] 2025-11-27 02:49:32,967 | INFO     | sum of square deviations: 641084932725.357
[2025-11-26 22:22:23] 2025-11-27 02:49:33,001 | INFO     | sum of deviations: 5975883820964.698
[2025-11-26 22:22:23] 2025-11-27 02:49:33,001 | INFO     | mean x: 1764172624.0722134
[2025-11-26 22:22:23] 2025-11-27 02:49:33,001 | INFO     | mean y: 2999047.361852433
[2025-11-26 22:22:23] 2025-11-27 02:49:33,001 | INFO     | intersect: -16441765294.180418
[2025-11-26 22:22:23] 2025-11-27 02:49:33,003 | INFO     | chi2: 16.982098418939106
[2025-11-26 22:22:23] 2025-11-27 02:49:33,003 | INFO     | current chi2=16.982098418939106 (change=17.822989153941073 %)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,003 | INFO     | right removable region: 1273
[2025-11-26 22:22:23] 2025-11-27 02:49:33,004 | INFO     | sum of square deviations: 641079825195.3572
[2025-11-26 22:22:23] 2025-11-27 02:49:33,037 | INFO     | sum of deviations: 4966998611358.653
[2025-11-26 22:22:23] 2025-11-27 02:49:33,037 | INFO     | mean x: 1764172929.0722134
[2025-11-26 22:22:23] 2025-11-27 02:49:33,037 | INFO     | mean y: 2999726.840659341
[2025-11-26 22:22:23] 2025-11-27 02:49:33,038 | INFO     | intersect: -13665570308.455582
[2025-11-26 22:22:23] 2025-11-27 02:49:33,039 | INFO     | chi2: 16.56698481025329
[2025-11-26 22:22:23] 2025-11-27 02:49:33,039 | INFO     | current chi2=16.56698481025329 (change=19.831739467463983 %)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,039 | INFO     | left removable region: 10
[2025-11-26 22:22:23] 2025-11-27 02:49:33,040 | INFO     | sum of square deviations: 624614796978.5857
[2025-11-26 22:22:23] 2025-11-27 02:49:33,048 | INFO     | time since job start (78180s) is within the limit (172800.0s)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,071 | INFO     | sum of deviations: 5055763575958.321
[2025-11-26 22:22:23] 2025-11-27 02:49:33,072 | INFO     | mean x: 1764172898.6294537
[2025-11-26 22:22:23] 2025-11-27 02:49:33,072 | INFO     | mean y: 3021799.7442596992
[2025-11-26 22:22:23] 2025-11-27 02:49:33,072 | INFO     | intersect: -14276564796.231613
[2025-11-26 22:22:23] 2025-11-27 02:49:33,073 | INFO     | chi2: 8.429291823858803
[2025-11-26 22:22:23] 2025-11-27 02:49:33,073 | INFO     | current memory leak: 8.09 B/s (using 1263 data points, chi2=8.43)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,074 | INFO     | could have reported an average CPU frequency of 3088 MHz (46 samples)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | ..............................
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . Timing measurements:
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . get job = 0 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . initial setup = 7 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . payload setup = 56 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . stage-in = 0 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . payload execution = 78003 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . stage-out = 5 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | . log creation = 1 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,075 | INFO     | ..............................
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | 
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | job summary report
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | --------------------------------------------------
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | PanDA job id: 6891106039
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | task id: 47483661
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | errors: (none)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | pilot state: finished 
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | transexitcode: 0
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | exeerrorcode: 0
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | exeerrordiag: 
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | exitcode: 0
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | exitmsg: OK
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | cpuconsumptiontime: 214629 s
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | nevents: 1000
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | neventsw: 0
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | pid: 3295714
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | pgrp: 3295714
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | corecount: 9
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | event service: False
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284332, 13: 2284360, 25: 2284416, 36: 2284444, 47: 2284918, 58: 2284918, 78065: 2345451, 78071: 2354445, 78073: 2354501, 78081:
[2025-11-26 22:22:23] 2025-11-27 02:49:33,487 | INFO     | --------------------------------------------------
[2025-11-26 22:22:23] 2025-11-27 02:49:33,488 | INFO     | 
[2025-11-26 22:22:23] 2025-11-27 02:49:33,488 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-26 22:22:23] 2025-11-27 02:49:33,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:22:23] 2025-11-27 02:49:33,517 | INFO     | job 6891106039 has completed (purged errors)
[2025-11-26 22:22:23] 2025-11-27 02:49:33,517 | INFO     | overall cleanup function is called
[2025-11-26 22:22:23] 2025-11-27 02:49:34,536 | INFO     | --- collectZombieJob: --- 10, [3295714]
[2025-11-26 22:22:23] 2025-11-27 02:49:34,536 | INFO     | zombie collector waiting for pid 3295714
[2025-11-26 22:22:23] 2025-11-27 02:49:34,537 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:22:23] 2025-11-27 02:49:34,538 | INFO     | collected zombie processes
[2025-11-26 22:22:23] 2025-11-27 02:49:34,538 | INFO     | will attempt to kill all subprocesses of pid=3295714
[2025-11-26 22:22:23] 2025-11-27 02:49:35,189 | INFO     | process IDs to be killed: [3295714] (in reverse order)
[2025-11-26 22:22:23] 2025-11-27 02:49:35,335 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:22:23] 2025-11-27 02:49:35,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:22:23] 2025-11-27 02:49:35,373 | INFO     | did not find any defunct processes belonging to 3295714
[2025-11-26 22:22:23] 2025-11-27 02:49:35,397 | INFO     | did not find any defunct processes belonging to 3295714
[2025-11-26 22:22:23] 2025-11-27 02:49:35,398 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:22:23] 2025-11-27 02:49:35,399 | INFO     | ready for new job
[2025-11-26 22:22:23] 2025-11-27 02:49:35,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:22:23] 2025-11-27 02:49:35,405 | INFO     | ***************************************
[2025-11-26 22:22:23] 2025-11-27 02:49:35,405 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:22:23] 2025-11-27 02:49:35,405 | INFO     | ***************************************
[2025-11-26 22:22:23] 2025-11-27 02:49:35,405 | INFO     | 
[2025-11-26 22:22:23] 2025-11-27 02:49:35,411 | INFO     | architecture information:
[2025-11-26 22:22:23] 2025-11-27 02:49:35,412 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:22:23] 2025-11-27 02:49:35,429 | INFO     | cat /etc/os-release:
[2025-11-26 22:22:23] NAME="CentOS Linux"
[2025-11-26 22:22:23] VERSION="7 (Core)"
[2025-11-26 22:22:23] ID="centos"
[2025-11-26 22:22:23] ID_LIKE="rhel fedora"
[2025-11-26 22:22:23] VERSION_ID="7"
[2025-11-26 22:22:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:22:23] ANSI_COLOR="0;31"
[2025-11-26 22:22:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:22:23] HOME_URL="https://www.centos.org/"
[2025-11-26 22:22:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:22:23] 
[2025-11-26 22:22:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:22:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:22:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:22:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:22:23] 
[2025-11-26 22:22:23] 2025-11-27 02:49:35,429 | INFO     | ***************************************
[2025-11-26 22:22:23] 2025-11-27 02:49:35,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-26 22:22:23] 2025-11-27 02:49:35,955 | INFO     | sufficient remaining disk space (120099700736 B)
[2025-11-26 22:22:23] 2025-11-27 02:49:35,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:22:23] 2025-11-27 02:49:35,955 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:22:23] 2025-11-27 02:49:35,956 | INFO     | update_server=False
[2025-11-26 22:22:23] 2025-11-27 02:49:35,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:22:23] 2025-11-27 02:49:35,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:22:23] 2025-11-27 02:49:36,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:22:23] 2025-11-27 02:49:36,113 | INFO     | all payload control threads have been joined
[2025-11-26 22:22:23] 2025-11-27 02:49:36,195 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 22:22:23] 2025-11-27 02:49:36,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 22:22:23] 2025-11-27 02:49:36,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:22:23] 2025-11-27 02:49:36,196 | INFO     | will abort loop
[2025-11-26 22:22:23] 2025-11-27 02:49:36,459 | INFO     | all data control threads have been joined
[2025-11-26 22:22:23] 2025-11-27 02:49:36,961 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,119 | INFO     | [payload] control thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,202 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,329 | INFO     | all job control threads have been joined
[2025-11-26 22:22:23] 2025-11-27 02:49:37,466 | INFO     | [data] control thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,515 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,709 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,792 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,963 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,969 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:37,981 | INFO     | [job] validate thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:38,005 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:38,041 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:38,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:22:23] 2025-11-27 02:49:38,337 | INFO     | [job] control thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:39,234 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:40,020 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:22:23] 2025-11-27 02:49:55,015 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:22:23] 2025-11-27 02:49:56,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360656353088)>', '<ExcThread(monitor, started 140360311359232)>']
[2025-11-26 22:22:23] 2025-11-27 02:50:01,802 | INFO     | all workflow threads have been joined
[2025-11-26 22:22:23] 2025-11-27 02:50:01,802 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:22:23] 2025-11-27 02:50:01,803 | INFO     | traces error code: 0
[2025-11-26 22:22:23] 2025-11-27 02:50:01,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:22:23] 2025-11-27 02:50:06,786 | INFO     | PID=3246864 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:22:23] 2025-11-27 02:50:06,789 | INFO     | .. there are 19 such processes running
[2025-11-26 22:22:23] 2025-11-27 02:50:06,790 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:22:23] 2025-11-27 02:50:06,790 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:22:23] 2025-11-27 02:50:06,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:22:23] 2025-11-27 02:50:06,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:22:23] 2025-11-27 02:50:06,790 | INFO     | [monitor] control thread has ended
[2025-11-26 22:22:23] 2025-11-27 02:50:06,953 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:22:23] 2025-11-27 02:50:06,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:22:23] 2025-11-27 02:50:06,958 [wrapper] pilotpid: 3246864
[2025-11-26 22:22:23] 2025-11-27 02:50:06,961 [wrapper] Pilot exit status: 0
[2025-11-26 22:22:23] 2025-11-27 02:50:06,997 [wrapper] pandaids: 6891106039
[2025-11-26 22:22:23] 2025-11-27 02:50:07,092 [wrapper] cleanup supervisor_pilot 2069924 3246865
[2025-11-26 22:22:23] 2025-11-27 02:50:07,095 [wrapper] Test setup, not cleaning
[2025-11-26 22:22:23] 2025-11-27 02:50:07,101 [wrapper] apfmon messages muted
[2025-11-26 22:22:23] 2025-11-27 02:50:07,103 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:22:23] 2025-11-27 02:50:07,106 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:22:23]  *** Error codes and diagnostics ***
[2025-11-26 22:22:23]     "exeErrorCode": 0,
[2025-11-26 22:22:23]     "exeErrorDiag": "",
[2025-11-26 22:22:23]     "pilotErrorCode": 0,
[2025-11-26 22:22:23]     "pilotErrorDiag": "",
[2025-11-26 22:22:23]  *** Listing of results directory ***
[2025-11-26 22:22:23] total 1322936
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-26 22:22:23] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:22:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-26 22:22:23] -rw-r--r--. 2 boincer umatlas 410083557 Nov 26 00:05 EVNT.47483658._000249.pool.root.1
[2025-11-26 22:22:23] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-26 22:22:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-26 22:22:23] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:05 input.tar.gz
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:05 pandaJob.out
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas    991877 Nov 26 00:06 agis_schedconf.cvmfs.json
[2025-11-26 22:22:23] drwx------. 5 boincer umatlas      4096 Nov 26 00:06 pilot3
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas       531 Nov 26 21:36 boinc_task_state.xml
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas 916160530 Nov 26 21:46 HITS.47483661._002190.pool.root.1
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas      1063 Nov 26 21:49 memory_monitor_summary.json
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas   2454769 Nov 26 21:49 log.47483661._002190.job.log.tgz.1
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas      8611 Nov 26 21:49 heartbeat.json
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas        95 Nov 26 21:50 pilot_heartbeat.json
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas       823 Nov 26 21:50 pilotlog.txt
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas   9807028 Nov 26 21:50 log.47483661._002190.job.log.1
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas       353 Nov 26 21:50 output.list
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:50 runtime_log
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas  12277760 Nov 26 21:50 result.tar.gz
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas       664 Nov 26 21:50 SDXKDmfrUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmn8qMDmd5pQQm.diag
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas      8704 Nov 26 21:50 runtime_log.err
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 22:22 init_data.xml
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:22 boinc_mmap_file
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas        28 Nov 26 22:22 wrapper_checkpoint.txt
[2025-11-26 22:22:23] -rw-r--r--. 1 boincer umatlas     21900 Nov 26 22:22 stderr.txt
[2025-11-26 22:22:23] HITS file was successfully produced:
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas 916160530 Nov 26 21:46 shared/HITS.pool.root.1
[2025-11-26 22:22:23]  *** Contents of shared directory: ***
[2025-11-26 22:22:23] total 1307764
[2025-11-26 22:22:23] -rw-r--r--. 2 boincer umatlas 410083557 Nov 26 00:05 ATLAS.root_0
[2025-11-26 22:22:23] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-26 22:22:23] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:05 input.tar.gz
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas 916160530 Nov 26 21:46 HITS.pool.root.1
[2025-11-26 22:22:23] -rw-------. 1 boincer umatlas  12277760 Nov 26 21:50 result.tar.gz
22:22:25 (3230205): run_atlas exited; CPU time 215761.578826
22:22:25 (3230205): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN