Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:13 (4129792): wrapper (7.7.26015): starting
00:00:13 (4129792): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:00:13] Arguments: --nthreads 12
[2025-11-27 00:00:13] Threads: 12
[2025-11-27 00:00:13] Checking for CVMFS
[2025-11-27 00:00:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:16] 2.13.2.0 9825 37719 408104 153347 2 360 24350254 40959965 26135 16776704 0 88828679 99.612 87962670 34183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:00:16] CVMFS is ok
[2025-11-27 00:00:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:16] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:16] Checking for apptainer binary...
[2025-11-27 00:00:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:16] Running /usr/bin/apptainer --version
[2025-11-27 00:00:16] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:17] c-211-35-1.aglt2.org
[2025-11-27 00:00:17] apptainer works
[2025-11-27 00:00:17] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:00:17] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:00:17] Starting ATLAS job with PandaID=6891104444
[2025-11-27 00:00:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:25:30]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:25:31] 2025-11-28 06:24:14,962 | INFO     | time since job start (91364s) is within the limit (172800.0s)
[2025-11-28 01:25:31] 2025-11-28 06:24:16,284 | INFO     | monitor loop #5031: job 0:6891104444 is in state 'finished'
[2025-11-28 01:25:31] 2025-11-28 06:24:16,285 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:25:31] 2025-11-28 06:24:16,976 | INFO     | time since job start (91366s) is within the limit (172800.0s)
[2025-11-28 01:25:31] 2025-11-28 06:24:18,793 | INFO     | monitor loop #5032: job 0:6891104444 is in state 'finished'
[2025-11-28 01:25:31] 2025-11-28 06:24:18,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:25:31] 2025-11-28 06:24:18,992 | INFO     | time since job start (91368s) is within the limit (172800.0s)
[2025-11-28 01:25:31] 2025-11-28 06:24:21,012 | INFO     | time since job start (91371s) is within the limit (172800.0s)
[2025-11-28 01:25:31] 2025-11-28 06:24:21,310 | INFO     | monitor loop #5033: job 0:6891104444 is in state 'finished'
[2025-11-28 01:25:31] 2025-11-28 06:24:21,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:25:31] 2025-11-28 06:24:23,052 | INFO     | time since job start (91373s) is within the limit (172800.0s)
[2025-11-28 01:25:31] 2025-11-28 06:24:23,607 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 01:25:31] 2025-11-28 06:24:23,690 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2376.3175104166667
[2025-11-28 01:25:31] 2025-11-28 06:24:23,733 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891104444/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:25:31] 2025-11-28 06:24:23,734 | INFO     | extracted standard info from prmon json
[2025-11-28 01:25:31] 2025-11-28 06:24:23,734 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:25:31] 2025-11-28 06:24:23,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:25:31] 2025-11-28 06:24:23,790 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:25:31] 2025-11-28 06:24:23,797 | INFO     | sum of square deviations: 1034179136443.33
[2025-11-28 01:25:31] 2025-11-28 06:24:23,821 | INFO     | monitor loop #5034: job 0:6891104444 is in state 'finished'
[2025-11-28 01:25:31] 2025-11-28 06:24:23,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:25:31] 2025-11-28 06:24:23,896 | INFO     | sum of deviations: 4672581359542.718
[2025-11-28 01:25:31] 2025-11-28 06:24:23,896 | INFO     | mean x: 1764265415.8975904
[2025-11-28 01:25:31] 2025-11-28 06:24:23,896 | INFO     | mean y: 3420918.141900937
[2025-11-28 01:25:31] 2025-11-28 06:24:23,896 | INFO     | intersect: -7967803220.028179
[2025-11-28 01:25:31] 2025-11-28 06:24:23,902 | INFO     | chi2: 27.490196714350972
[2025-11-28 01:25:31] 2025-11-28 06:24:23,905 | INFO     | sum of square deviations: 1023835366213.1342
[2025-11-28 01:25:31] 2025-11-28 06:24:24,007 | INFO     | sum of deviations: 5333450596661.096
[2025-11-28 01:25:31] 2025-11-28 06:24:24,007 | INFO     | mean x: 1764265263.4217596
[2025-11-28 01:25:31] 2025-11-28 06:24:24,008 | INFO     | mean y: 3430658.5587642714
[2025-11-28 01:25:31] 2025-11-28 06:24:24,008 | INFO     | intersect: -9187130570.702785
[2025-11-28 01:25:31] 2025-11-28 06:24:24,014 | INFO     | chi2: 23.42355752924557
[2025-11-28 01:25:31] 2025-11-28 06:24:24,014 | INFO     | current chi2=23.42355752924557 (change=14.793052328295836 %)
[2025-11-28 01:25:31] 2025-11-28 06:24:24,014 | INFO     | right removable region: 1488
[2025-11-28 01:25:31] 2025-11-28 06:24:24,016 | INFO     | sum of square deviations: 1023810933836.0079
[2025-11-28 01:25:31] 2025-11-28 06:24:24,232 | INFO     | sum of deviations: 3963811258354.914
[2025-11-28 01:25:31] 2025-11-28 06:24:24,233 | INFO     | mean x: 1764265568.5533915
[2025-11-28 01:25:31] 2025-11-28 06:24:24,233 | INFO     | mean y: 3431352.6299529886
[2025-11-28 01:25:31] 2025-11-28 06:24:24,233 | INFO     | intersect: -6827142039.624936
[2025-11-28 01:25:31] 2025-11-28 06:24:24,240 | INFO     | chi2: 23.506464962202212
[2025-11-28 01:25:31] 2025-11-28 06:24:24,240 | INFO     | current chi2=23.506464962202212 (change=14.491463242491436 %)
[2025-11-28 01:25:31] 2025-11-28 06:24:24,240 | INFO     | left removable region: 10
[2025-11-28 01:25:31] 2025-11-28 06:24:24,246 | INFO     | sum of square deviations: 1001274006673.2136
[2025-11-28 01:25:31] 2025-11-28 06:24:24,588 | INFO     | sum of deviations: 4203083480603.5063
[2025-11-28 01:25:31] 2025-11-28 06:24:24,588 | INFO     | mean x: 1764265538.239513
[2025-11-28 01:25:31] 2025-11-28 06:24:24,588 | INFO     | mean y: 3451128.2584573748
[2025-11-28 01:25:31] 2025-11-28 06:24:24,589 | INFO     | intersect: -7402469019.224913
[2025-11-28 01:25:31] 2025-11-28 06:24:24,595 | INFO     | chi2: 16.465564645139327
[2025-11-28 01:25:31] 2025-11-28 06:24:24,599 | INFO     | current memory leak: 4.20 B/s (using 1478 data points, chi2=16.47)
[2025-11-28 01:25:31] 2025-11-28 06:24:24,601 | INFO     | could have reported an average CPU frequency of 2427 MHz (53 samples)
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | ..............................
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . Timing measurements:
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . get job = 0 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . initial setup = 3 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . payload setup = 45 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . stage-in = 0 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . payload execution = 91198 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . stage-out = 16 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | . log creation = 2 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,602 | INFO     | ..............................
[2025-11-28 01:25:31] 2025-11-28 06:24:24,973 | INFO     | 
[2025-11-28 01:25:31] 2025-11-28 06:24:24,973 | INFO     | job summary report
[2025-11-28 01:25:31] 2025-11-28 06:24:24,973 | INFO     | --------------------------------------------------
[2025-11-28 01:25:31] 2025-11-28 06:24:24,973 | INFO     | PanDA job id: 6891104444
[2025-11-28 01:25:31] 2025-11-28 06:24:24,973 | INFO     | task id: 47483661
[2025-11-28 01:25:31] 2025-11-28 06:24:24,973 | INFO     | errors: (none)
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | pilot state: finished 
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | transexitcode: 0
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | exeerrorcode: 0
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | exeerrordiag: 
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | exitcode: 0
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | exitmsg: OK
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | cpuconsumptiontime: 293883 s
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | nevents: 1000
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | neventsw: 0
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | pid: 4163128
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | pgrp: 4163128
[2025-11-28 01:25:31] 2025-11-28 06:24:24,974 | INFO     | corecount: 12
[2025-11-28 01:25:31] 2025-11-28 06:24:24,975 | INFO     | event service: False
[2025-11-28 01:25:31] 2025-11-28 06:24:24,975 | INFO     | sizes: {0: 2284077, 1: 2284161, 2: 2284360, 3: 2284360, 13: 2284388, 24: 2284444, 34: 2284862, 36: 2284890, 91249: 2350129, 91266: 2359123, 91268: 2359179, 91306: 
[2025-11-28 01:25:31] 2025-11-28 06:24:24,975 | INFO     | --------------------------------------------------
[2025-11-28 01:25:31] 2025-11-28 06:24:24,975 | INFO     | 
[2025-11-28 01:25:31] 2025-11-28 06:24:24,975 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 01:25:31] 2025-11-28 06:24:25,207 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,207 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,207 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:25:31] 2025-11-28 06:24:25,209 | INFO     | job 6891104444 has completed (purged errors)
[2025-11-28 01:25:31] 2025-11-28 06:24:25,213 | INFO     | overall cleanup function is called
[2025-11-28 01:25:31] 2025-11-28 06:24:26,191 | INFO     | PID=4141002 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 01:25:31] 2025-11-28 06:24:26,191 | INFO     | .. there are 26 such processes running
[2025-11-28 01:25:31] 2025-11-28 06:24:26,292 | INFO     | --- collectZombieJob: --- 10, [4163128]
[2025-11-28 01:25:31] 2025-11-28 06:24:26,293 | INFO     | zombie collector waiting for pid 4163128
[2025-11-28 01:25:31] 2025-11-28 06:24:26,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:25:31] 2025-11-28 06:24:26,293 | INFO     | collected zombie processes
[2025-11-28 01:25:31] 2025-11-28 06:24:26,293 | INFO     | will attempt to kill all subprocesses of pid=4163128
[2025-11-28 01:25:31] 2025-11-28 06:24:30,174 | INFO     | process IDs to be killed: [4163128] (in reverse order)
[2025-11-28 01:25:31] 2025-11-28 06:24:30,482 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:25:31] 2025-11-28 06:24:30,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:25:31] 2025-11-28 06:24:30,521 | INFO     | did not find any defunct processes belonging to 4163128
[2025-11-28 01:25:31] 2025-11-28 06:24:30,554 | INFO     | did not find any defunct processes belonging to 4163128
[2025-11-28 01:25:31] 2025-11-28 06:24:30,564 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:25:31] 2025-11-28 06:24:30,564 | INFO     | ready for new job
[2025-11-28 01:25:31] 2025-11-28 06:24:30,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:25:31] 2025-11-28 06:24:30,581 | INFO     | ***************************************
[2025-11-28 01:25:31] 2025-11-28 06:24:30,581 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:25:31] 2025-11-28 06:24:30,581 | INFO     | ***************************************
[2025-11-28 01:25:31] 2025-11-28 06:24:30,581 | INFO     | 
[2025-11-28 01:25:31] 2025-11-28 06:24:30,596 | INFO     | architecture information:
[2025-11-28 01:25:31] 2025-11-28 06:24:30,597 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:25:31] 2025-11-28 06:24:30,786 | INFO     | cat /etc/os-release:
[2025-11-28 01:25:31] NAME="CentOS Linux"
[2025-11-28 01:25:31] VERSION="7 (Core)"
[2025-11-28 01:25:31] ID="centos"
[2025-11-28 01:25:31] ID_LIKE="rhel fedora"
[2025-11-28 01:25:31] VERSION_ID="7"
[2025-11-28 01:25:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:25:31] ANSI_COLOR="0;31"
[2025-11-28 01:25:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:25:31] HOME_URL="https://www.centos.org/"
[2025-11-28 01:25:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:25:31] 
[2025-11-28 01:25:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:25:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:25:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:25:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:25:31] 
[2025-11-28 01:25:31] 2025-11-28 06:24:30,787 | INFO     | ***************************************
[2025-11-28 01:25:31] 2025-11-28 06:24:31,291 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 01:25:31] 2025-11-28 06:24:31,391 | INFO     | sufficient remaining disk space (118037151744 B)
[2025-11-28 01:25:31] 2025-11-28 06:24:31,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:25:31] 2025-11-28 06:24:31,392 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:25:31] 2025-11-28 06:24:31,392 | INFO     | update_server=False
[2025-11-28 01:25:31] 2025-11-28 06:24:31,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:25:31] 2025-11-28 06:24:31,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:25:31] 2025-11-28 06:24:31,456 | INFO     | all payload control threads have been joined
[2025-11-28 01:25:31] 2025-11-28 06:24:31,512 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 01:25:31] 2025-11-28 06:24:31,513 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 01:25:31] 2025-11-28 06:24:31,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:25:31] 2025-11-28 06:24:31,513 | INFO     | will abort loop
[2025-11-28 01:25:31] 2025-11-28 06:24:32,380 | INFO     | all data control threads have been joined
[2025-11-28 01:25:31] 2025-11-28 06:24:32,419 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:32,464 | INFO     | [payload] control thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:32,519 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:32,730 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:32,834 | INFO     | all job control threads have been joined
[2025-11-28 01:25:31] 2025-11-28 06:24:32,835 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,037 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,039 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,387 | INFO     | [data] control thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,425 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,631 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,632 | INFO     | [job] validate thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,840 | INFO     | [job] control thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:33,991 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:34,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:25:31] 2025-11-28 06:24:34,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:25:31] 2025-11-28 06:24:35,042 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:38,472 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:25:31] 2025-11-28 06:24:59,337 | INFO     | PID=4141002 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 01:25:31] 2025-11-28 06:24:59,338 | INFO     | .. there are 26 such processes running
[2025-11-28 01:25:31] 2025-11-28 06:24:59,338 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:25:31] 2025-11-28 06:24:59,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:25:31] 2025-11-28 06:24:59,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:25:31] 2025-11-28 06:25:20,000 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:25:31] 2025-11-28 06:25:20,059 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223077951296)>', '<ExcThread(monitor, started 140222343927552)>']
[2025-11-28 01:25:31] 2025-11-28 06:25:20,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:25:31] 2025-11-28 06:25:20,494 | INFO     | [monitor] control thread has ended
[2025-11-28 01:25:31] 2025-11-28 06:25:25,089 | INFO     | all workflow threads have been joined
[2025-11-28 01:25:31] 2025-11-28 06:25:25,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:25:31] 2025-11-28 06:25:25,090 | INFO     | traces error code: 0
[2025-11-28 01:25:31] 2025-11-28 06:25:25,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:25:31] 2025-11-28 06:25:29,364 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:25:31] 2025-11-28 06:25:29,412 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:25:31] 2025-11-28 06:25:29,437 [wrapper] pilotpid: 4141002
[2025-11-28 01:25:31] 2025-11-28 06:25:29,463 [wrapper] Pilot exit status: 0
[2025-11-28 01:25:31] 2025-11-28 06:25:29,568 [wrapper] pandaids: 6891104444
[2025-11-28 01:25:31] 2025-11-28 06:25:30,150 [wrapper] cleanup supervisor_pilot 1678357 4141003
[2025-11-28 01:25:31] 2025-11-28 06:25:30,161 [wrapper] Test setup, not cleaning
[2025-11-28 01:25:31] 2025-11-28 06:25:30,178 [wrapper] apfmon messages muted
[2025-11-28 01:25:31] 2025-11-28 06:25:30,202 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:25:31] 2025-11-28 06:25:30,243 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:25:31]  *** Error codes and diagnostics ***
[2025-11-28 01:25:31]     "exeErrorCode": 0,
[2025-11-28 01:25:31]     "exeErrorDiag": "",
[2025-11-28 01:25:31]     "pilotErrorCode": 0,
[2025-11-28 01:25:31]     "pilotErrorDiag": "",
[2025-11-28 01:25:31]  *** Listing of results directory ***
[2025-11-28 01:25:31] total 1322204
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-28 01:25:31] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:25:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-28 01:25:31] -rw-r--r--. 2 boincer umatlas 410991740 Nov 27 00:00 EVNT.47483658._000225.pool.root.1
[2025-11-28 01:25:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-28 01:25:31] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:00 input.tar.gz
[2025-11-28 01:25:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:00 start_atlas.sh
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 00:00 pandaJob.out
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-28 01:25:31] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas       533 Nov 28 00:35 boinc_task_state.xml
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas      6881 Nov 28 01:20 init_data.xml
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas 911319094 Nov 28 01:20 HITS.47483661._001946.pool.root.1
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas      1061 Nov 28 01:23 memory_monitor_summary.json
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas   1516240 Nov 28 01:23 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas   2911509 Nov 28 01:23 log.47483661._001946.job.log.tgz.1
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas        95 Nov 28 01:24 pilot_heartbeat.json
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas      8632 Nov 28 01:24 heartbeat.json
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas      5011 Nov 28 01:25 pilotlog.txt
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas        29 Nov 28 01:25 wrapper_checkpoint.txt
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas  10940064 Nov 28 01:25 log.47483661._001946.job.log.1
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 01:25 boinc_mmap_file
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas       353 Nov 28 01:25 output.list
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas       620 Nov 28 01:25 runtime_log
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas  13875200 Nov 28 01:25 result.tar.gz
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas      8716 Nov 28 01:25 runtime_log.err
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas       663 Nov 28 01:25 Oo0NDmRqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmv6qMDm88AUpm.diag
[2025-11-28 01:25:31] -rw-r--r--. 1 boincer umatlas     21879 Nov 28 01:25 stderr.txt
[2025-11-28 01:25:31] HITS file was successfully produced:
[2025-11-28 01:25:31] -rw-------. 1 boincer umatlas 911319094 Nov 28 01:20 shared/HITS.pool.root.1
[2025-11-28 01:25:51]  *** Contents of shared directory: ***
[2025-11-28 01:25:51] total 1305480
[2025-11-28 01:25:51] -rw-r--r--. 2 boincer umatlas 410991740 Nov 27 00:00 ATLAS.root_0
[2025-11-28 01:25:51] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:00 input.tar.gz
[2025-11-28 01:25:51] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:00 start_atlas.sh
[2025-11-28 01:25:51] -rw-------. 1 boincer umatlas 911319094 Nov 28 01:20 HITS.pool.root.1
[2025-11-28 01:25:51] -rw-------. 1 boincer umatlas  13875200 Nov 28 01:25 result.tar.gz
01:25:53 (4129792): run_atlas exited; CPU time 295933.386402
01:25:53 (4129792): called boinc_finish(0)

</stderr_txt>
]]>

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