Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:09 (1353281): wrapper (7.7.26015): starting
00:05:09 (1353281): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:05:09] Arguments: --nthreads 9
[2025-11-26 00:05:09] Threads: 9
[2025-11-26 00:05:09] Checking for CVMFS
[2025-11-26 00:05:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:12] 2.13.3.0 13693 29605 349844 153309 1 541 29113465 40960001 23440 16776704 0 82415364 99.604 87850206 37189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:05:12] CVMFS is ok
[2025-11-26 00:05:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:12] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:12] Checking for apptainer binary...
[2025-11-26 00:05:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:12] Running /usr/bin/apptainer --version
[2025-11-26 00:05:12] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:12] c6-5-37-3.aglt2.org
[2025-11-26 00:05:12] apptainer works
[2025-11-26 00:05:13] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:05:13] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:05:13] Starting ATLAS job with PandaID=6891106003
[2025-11-26 00:05:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:40:05 (1353281): BOINC client no longer exists - exiting
00:40:05 (1353281): timer handler: client dead, exiting
00:49:58 (2182363): wrapper (7.7.26015): starting
00:49:58 (2182363): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:49:58] Arguments: --nthreads 8
[2025-11-27 00:49:58] Threads: 8
[2025-11-27 00:49:58] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:49:58] Checking for CVMFS
[2025-11-27 00:49:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:49:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:49:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:49:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:49:59] 2.13.3.0 13693 31089 340196 153349 3 190 27770948 40960001 23512 16776704 0 89077767 99.606 92821430 36916 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:49:59] CVMFS is ok
[2025-11-27 00:49:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:49:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:49:59] Further information can be found at the LHC@home message board.
[2025-11-27 00:49:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:49:59] Checking for apptainer binary...
[2025-11-27 00:49:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:49:59] Running /usr/bin/apptainer --version
[2025-11-27 00:49:59] apptainer version 1.4.4-1.el9
[2025-11-27 00:49:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:49:59] c6-5-37-3.aglt2.org
[2025-11-27 00:49:59] apptainer works
[2025-11-27 00:49:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:49:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:49:59] Starting ATLAS job with PandaID=6891106003
[2025-11-27 00:49:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:24:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:24:29] 2025-11-28 00:23:55,546 | INFO     | monitor loop #4078: job 0:6891106003 is in state 'finished'
[2025-11-27 19:24:29] 2025-11-28 00:23:55,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:24:29] 2025-11-28 00:23:55,830 | INFO     | time since job start (66822s) is within the limit (172800.0s)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,177 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:24:29] 2025-11-28 00:23:57,184 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3052.5447678571436
[2025-11-27 19:24:29] 2025-11-28 00:23:57,192 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891106003/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,193 | INFO     | extracted standard info from prmon json
[2025-11-27 19:24:29] 2025-11-28 00:23:57,193 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:24:29] 2025-11-28 00:23:57,193 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:24:29] 2025-11-28 00:23:57,208 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:24:29] 2025-11-28 00:23:57,209 | INFO     | sum of square deviations: 407124047004.70874
[2025-11-27 19:24:29] 2025-11-28 00:23:57,228 | INFO     | sum of deviations: 2868752060778.186
[2025-11-27 19:24:29] 2025-11-28 00:23:57,228 | INFO     | mean x: 1764256017.6091325
[2025-11-27 19:24:29] 2025-11-28 00:23:57,228 | INFO     | mean y: 2974729.5214611874
[2025-11-27 19:24:29] 2025-11-28 00:23:57,228 | INFO     | intersect: -12428649301.269276
[2025-11-27 19:24:29] 2025-11-28 00:23:57,229 | INFO     | chi2: 5.307684499637081
[2025-11-27 19:24:29] 2025-11-28 00:23:57,230 | INFO     | sum of square deviations: 401574049585.5008
[2025-11-27 19:24:29] 2025-11-28 00:23:57,247 | INFO     | sum of deviations: 3196716051140.165
[2025-11-27 19:24:29] 2025-11-28 00:23:57,248 | INFO     | mean x: 1764255865.1302752
[2025-11-27 19:24:29] 2025-11-28 00:23:57,248 | INFO     | mean y: 2983737.688990826
[2025-11-27 19:24:29] 2025-11-28 00:23:57,248 | INFO     | intersect: -14041312820.321863
[2025-11-27 19:24:29] 2025-11-28 00:23:57,248 | INFO     | chi2: 2.8335573671434062
[2025-11-27 19:24:29] 2025-11-28 00:23:57,248 | INFO     | current chi2=2.8335573671434062 (change=46.61405802592159 %)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,249 | INFO     | sum of square deviations: 396074021157.5336
[2025-11-27 19:24:29] 2025-11-28 00:23:57,261 | INFO     | sum of deviations: 3285824956916.5464
[2025-11-27 19:24:29] 2025-11-28 00:23:57,261 | INFO     | mean x: 1764255712.6414747
[2025-11-27 19:24:29] 2025-11-28 00:23:57,261 | INFO     | mean y: 2986205.8857142855
[2025-11-27 19:24:29] 2025-11-28 00:23:57,261 | INFO     | intersect: -14633256368.262424
[2025-11-27 19:24:29] 2025-11-28 00:23:57,261 | INFO     | chi2: 2.50422613399138
[2025-11-27 19:24:29] 2025-11-28 00:23:57,262 | INFO     | current chi2=2.50422613399138 (change=11.62253628498212 %)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,262 | INFO     | right removable region: 1084
[2025-11-27 19:24:29] 2025-11-28 00:23:57,262 | INFO     | sum of square deviations: 401571237268.52814
[2025-11-27 19:24:29] 2025-11-28 00:23:57,279 | INFO     | sum of deviations: 2586787081464.872
[2025-11-27 19:24:29] 2025-11-28 00:23:57,280 | INFO     | mean x: 1764256170.1266055
[2025-11-27 19:24:29] 2025-11-28 00:23:57,280 | INFO     | mean y: 2982463.6458715596
[2025-11-27 19:24:29] 2025-11-28 00:23:57,280 | INFO     | intersect: -11361763428.815645
[2025-11-27 19:24:29] 2025-11-28 00:23:57,281 | INFO     | chi2: 3.37210728768751
[2025-11-27 19:24:29] 2025-11-28 00:23:57,281 | INFO     | current chi2=3.37210728768751 (change=36.46745039351752 %)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,282 | INFO     | sum of square deviations: 396070123418.79645
[2025-11-27 19:24:29] 2025-11-28 00:23:57,300 | INFO     | sum of deviations: 2484318806531.828
[2025-11-27 19:24:29] 2025-11-28 00:23:57,300 | INFO     | mean x: 1764256322.6304147
[2025-11-27 19:24:29] 2025-11-28 00:23:57,300 | INFO     | mean y: 2985304.0294930874
[2025-11-27 19:24:29] 2025-11-28 00:23:57,300 | INFO     | intersect: -11063174203.33369
[2025-11-27 19:24:29] 2025-11-28 00:23:57,301 | INFO     | chi2: 3.2734005267935844
[2025-11-27 19:24:29] 2025-11-28 00:23:57,302 | INFO     | current chi2=3.2734005267935844 (change=2.9271536304414485 %)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,302 | INFO     | left removable region: 20
[2025-11-27 19:24:29] 2025-11-28 00:23:57,303 | INFO     | sum of square deviations: 373518505504.42065
[2025-11-27 19:24:29] 2025-11-28 00:23:57,320 | INFO     | sum of deviations: 2751803351893.9023
[2025-11-27 19:24:29] 2025-11-28 00:23:57,320 | INFO     | mean x: 1764256292.1456766
[2025-11-27 19:24:29] 2025-11-28 00:23:57,320 | INFO     | mean y: 3001690.9360902254
[2025-11-27 19:24:29] 2025-11-28 00:23:57,320 | INFO     | intersect: -12994711425.767635
[2025-11-27 19:24:29] 2025-11-28 00:23:57,321 | INFO     | chi2: 0.3672561209192231
[2025-11-27 19:24:29] 2025-11-28 00:23:57,322 | INFO     | current memory leak: 7.37 B/s (using 1064 data points, chi2=0.37)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,323 | INFO     | could have reported an average CPU frequency of 2942 MHz (40 samples)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,323 | INFO     | ..............................
[2025-11-27 19:24:29] 2025-11-28 00:23:57,323 | INFO     | . Timing measurements:
[2025-11-27 19:24:29] 2025-11-28 00:23:57,323 | INFO     | . get job = 0 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,323 | INFO     | . initial setup = 2 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,323 | INFO     | . payload setup = 7 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,324 | INFO     | . stage-in = 0 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,324 | INFO     | . payload execution = 66786 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,324 | INFO     | . stage-out = 3 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,324 | INFO     | . log creation = 0 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,324 | INFO     | ..............................
[2025-11-27 19:24:29] 2025-11-28 00:23:57,407 | INFO     | 
[2025-11-27 19:24:29] 2025-11-28 00:23:57,407 | INFO     | job summary report
[2025-11-27 19:24:29] 2025-11-28 00:23:57,407 | INFO     | --------------------------------------------------
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | PanDA job id: 6891106003
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | task id: 47483661
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | errors: (none)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | pilot state: finished 
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | transexitcode: 0
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | exeerrorcode: 0
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | exeerrordiag: 
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | exitcode: 0
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | exitmsg: OK
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | cpuconsumptiontime: 235978 s
[2025-11-27 19:24:29] 2025-11-28 00:23:57,408 | INFO     | nevents: 1000
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | neventsw: 0
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | pid: 2214216
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | pgrp: 2214216
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | corecount: 8
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | event service: False
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | sizes: {0: 2284304, 5: 2284566, 11: 2284622, 66797: 2340613, 66800: 2349607, 66801: 2349663, 66807: 2350037}
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | --------------------------------------------------
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | 
[2025-11-27 19:24:29] 2025-11-28 00:23:57,409 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 19:24:29] 2025-11-28 00:23:57,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,429 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,431 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,431 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,431 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:24:29] 2025-11-28 00:23:57,431 | INFO     | job 6891106003 has completed (purged errors)
[2025-11-27 19:24:29] 2025-11-28 00:23:57,431 | INFO     | overall cleanup function is called
[2025-11-27 19:24:29] 2025-11-28 00:23:58,446 | INFO     | --- collectZombieJob: --- 10, [2214216]
[2025-11-27 19:24:29] 2025-11-28 00:23:58,446 | INFO     | zombie collector waiting for pid 2214216
[2025-11-27 19:24:29] 2025-11-28 00:23:58,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:24:29] 2025-11-28 00:23:58,447 | INFO     | collected zombie processes
[2025-11-27 19:24:29] 2025-11-28 00:23:58,447 | INFO     | will attempt to kill all subprocesses of pid=2214216
[2025-11-27 19:24:29] 2025-11-28 00:23:58,792 | INFO     | process IDs to be killed: [2214216] (in reverse order)
[2025-11-27 19:24:29] 2025-11-28 00:23:58,870 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:24:29] 2025-11-28 00:23:58,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:24:29] 2025-11-28 00:23:58,883 | INFO     | did not find any defunct processes belonging to 2214216
[2025-11-27 19:24:29] 2025-11-28 00:23:58,897 | INFO     | did not find any defunct processes belonging to 2214216
[2025-11-27 19:24:29] 2025-11-28 00:23:58,898 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:24:29] 2025-11-28 00:23:58,898 | INFO     | ready for new job
[2025-11-27 19:24:29] 2025-11-28 00:23:58,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:24:29] 2025-11-28 00:23:58,903 | INFO     | ***************************************
[2025-11-27 19:24:29] 2025-11-28 00:23:58,903 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:24:29] 2025-11-28 00:23:58,904 | INFO     | ***************************************
[2025-11-27 19:24:29] 2025-11-28 00:23:58,904 | INFO     | 
[2025-11-27 19:24:29] 2025-11-28 00:23:58,907 | INFO     | architecture information:
[2025-11-27 19:24:29] 2025-11-28 00:23:58,907 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:24:29] 2025-11-28 00:23:58,920 | INFO     | cat /etc/os-release:
[2025-11-27 19:24:29] NAME="CentOS Linux"
[2025-11-27 19:24:29] VERSION="7 (Core)"
[2025-11-27 19:24:29] ID="centos"
[2025-11-27 19:24:29] ID_LIKE="rhel fedora"
[2025-11-27 19:24:29] VERSION_ID="7"
[2025-11-27 19:24:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:24:29] ANSI_COLOR="0;31"
[2025-11-27 19:24:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:24:29] HOME_URL="https://www.centos.org/"
[2025-11-27 19:24:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:24:29] 
[2025-11-27 19:24:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:24:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:24:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:24:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:24:29] 
[2025-11-27 19:24:29] 2025-11-28 00:23:58,920 | INFO     | ***************************************
[2025-11-27 19:24:29] 2025-11-28 00:23:59,422 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 19:24:29] 2025-11-28 00:23:59,437 | INFO     | sufficient remaining disk space (72031928320 B)
[2025-11-27 19:24:29] 2025-11-28 00:23:59,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:24:29] 2025-11-28 00:23:59,438 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:24:29] 2025-11-28 00:23:59,438 | INFO     | update_server=False
[2025-11-27 19:24:29] 2025-11-28 00:23:59,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:24:29] 2025-11-28 00:23:59,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:24:29] 2025-11-28 00:23:59,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:24:29] 2025-11-28 00:23:59,439 | INFO     | aborting loop
[2025-11-27 19:24:29] 2025-11-28 00:23:59,963 | INFO     | all payload control threads have been joined
[2025-11-27 19:24:29] 2025-11-28 00:24:00,017 | INFO     | all job control threads have been joined
[2025-11-27 19:24:29] 2025-11-28 00:24:00,436 | INFO     | all data control threads have been joined
[2025-11-27 19:24:29] 2025-11-28 00:24:00,443 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:00,445 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:00,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:00,698 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:00,715 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:00,968 | INFO     | [payload] control thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:00,972 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,023 | INFO     | [job] control thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,096 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,163 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,231 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,441 | INFO     | [data] control thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,444 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:01,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:24:29] 2025-11-28 00:24:01,678 | INFO     | [job] validate thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:02,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:24:29] 2025-11-28 00:24:03,422 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:05,467 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:24:29] 2025-11-28 00:24:12,835 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:24:29] 2025-11-28 00:24:14,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425364019008)>', '<ExcThread(monitor, started 140424870086400)>']
[2025-11-27 19:24:29] 2025-11-28 00:24:19,030 | INFO     | all workflow threads have been joined
[2025-11-27 19:24:29] 2025-11-28 00:24:19,030 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:24:29] 2025-11-28 00:24:19,030 | INFO     | traces error code: 0
[2025-11-27 19:24:29] 2025-11-28 00:24:19,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:24:29] 2025-11-28 00:24:29,330 | INFO     | PID=2194966 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:24:29] 2025-11-28 00:24:29,331 | INFO     | .. there are 29 such processes running
[2025-11-27 19:24:29] 2025-11-28 00:24:29,331 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:24:29] 2025-11-28 00:24:29,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:24:29] 2025-11-28 00:24:29,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:24:29] 2025-11-28 00:24:29,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:24:29] 2025-11-28 00:24:29,331 | INFO     | [monitor] control thread has ended
[2025-11-27 19:24:29] 2025-11-28 00:24:29,505 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:24:29] 2025-11-28 00:24:29,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:24:29] 2025-11-28 00:24:29,511 [wrapper] pilotpid: 2194966
[2025-11-27 19:24:29] 2025-11-28 00:24:29,514 [wrapper] Pilot exit status: 0
[2025-11-27 19:24:29] 2025-11-28 00:24:29,524 [wrapper] pandaids: 6891106003 6891106003
[2025-11-27 19:24:29] 2025-11-28 00:24:29,607 [wrapper] cleanup supervisor_pilot 1200786 2194968
[2025-11-27 19:24:29] 2025-11-28 00:24:29,610 [wrapper] Test setup, not cleaning
[2025-11-27 19:24:29] 2025-11-28 00:24:29,613 [wrapper] apfmon messages muted
[2025-11-27 19:24:29] 2025-11-28 00:24:29,616 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:24:29] 2025-11-28 00:24:29,620 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:24:29]  *** Error codes and diagnostics ***
[2025-11-27 19:24:29]     "exeErrorCode": 0,
[2025-11-27 19:24:29]     "exeErrorDiag": "",
[2025-11-27 19:24:29]     "pilotErrorCode": 0,
[2025-11-27 19:24:29]     "pilotErrorDiag": "",
[2025-11-27 19:24:29]  *** Listing of results directory ***
[2025-11-27 19:24:29] total 1748864
[2025-11-27 19:24:29] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-27 19:24:29] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:24:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:05 run_atlas
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:05 job.xml
[2025-11-27 19:24:29] -rw-r--r--. 3 boincer umatlas 411766144 Nov 26 00:05 EVNT.47483658._000246.pool.root.1
[2025-11-27 19:24:29] -rw-r--r--. 3 boincer umatlas 411766144 Nov 26 00:05 ATLAS.root_0
[2025-11-27 19:24:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-27 19:24:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-27 19:24:29] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:05 input.tar.gz
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 00:49 pandaJob.out
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas    991578 Nov 27 00:50 agis_schedconf.cvmfs.json
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas       534 Nov 27 19:10 boinc_task_state.xml
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas      6847 Nov 27 19:19 init_data.xml
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas 941922575 Nov 27 19:23 HITS.47483661._002154.pool.root.1
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas        96 Nov 27 19:23 pilot_heartbeat.json
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas      1058 Nov 27 19:23 memory_monitor_summary.json
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas   2209479 Nov 27 19:23 log.47483661._002154.job.log.tgz.1
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas      8616 Nov 27 19:23 heartbeat.json
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:24 boinc_mmap_file
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas        30 Nov 27 19:24 wrapper_checkpoint.txt
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas       823 Nov 27 19:24 pilotlog.txt
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas   8523655 Nov 27 19:24 log.47483661._002154.job.log.1
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas       353 Nov 27 19:24 output.list
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:24 runtime_log
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas  10752000 Nov 27 19:24 result.tar.gz
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas      8794 Nov 27 19:24 runtime_log.err
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas       786 Nov 27 19:24 e91MDmfrUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKPKODmgStl1n.diag
[2025-11-27 19:24:29] -rw-r--r--. 1 boincer umatlas     23616 Nov 27 19:24 stderr.txt
[2025-11-27 19:24:29] HITS file was successfully produced:
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas 941922575 Nov 27 19:23 shared/HITS.pool.root.1
[2025-11-27 19:24:29]  *** Contents of shared directory: ***
[2025-11-27 19:24:29] total 1333068
[2025-11-27 19:24:29] -rw-r--r--. 3 boincer umatlas 411766144 Nov 26 00:05 ATLAS.root_0
[2025-11-27 19:24:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:05 start_atlas.sh
[2025-11-27 19:24:29] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:05 input.tar.gz
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas 941922575 Nov 27 19:23 HITS.pool.root.1
[2025-11-27 19:24:29] -rw-------. 1 boincer umatlas  10752000 Nov 27 19:24 result.tar.gz
19:24:31 (2182363): run_atlas exited; CPU time 237418.236702
19:24:31 (2182363): called boinc_finish(0)

</stderr_txt>
]]>

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