Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:28 (3324296): wrapper (7.7.26015): starting
00:04:28 (3324296): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:28] Arguments: --nthreads 9
[2025-11-26 00:04:28] Threads: 9
[2025-11-26 00:04:28] Checking for CVMFS
[2025-11-26 00:04:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:30] 2.13.3.0 12468 29609 354544 153309 2 390 27007085 32947200 31201 16776704 0 115436961 99.430 166219539 34183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:30] CVMFS is ok
[2025-11-26 00:04:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:30] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:30] Checking for apptainer binary...
[2025-11-26 00:04:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:30] Running /usr/bin/apptainer --version
[2025-11-26 00:04:30] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:30] c6-6-8-1.aglt2.org
[2025-11-26 00:04:30] apptainer works
[2025-11-26 00:04:30] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:30] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:31] Starting ATLAS job with PandaID=6891564785
[2025-11-26 00:04:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:36:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:36:44] 2025-11-27 05:35:51,525 | INFO     | time since job start (88199s) is within the limit (172800.0s)
[2025-11-27 00:36:44] 2025-11-27 05:35:52,677 | INFO     | monitor loop #4835: job 0:6891564785 is in state 'finished'
[2025-11-27 00:36:44] 2025-11-27 05:35:52,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:36:44] 2025-11-27 05:35:53,554 | INFO     | time since job start (88201s) is within the limit (172800.0s)
[2025-11-27 00:36:44] 2025-11-27 05:35:53,630 [wrapper] supervise_pilot (15 min periods counter: 99)
[2025-11-27 00:36:44] 2025-11-27 05:35:55,185 | INFO     | monitor loop #4836: job 0:6891564785 is in state 'finished'
[2025-11-27 00:36:44] 2025-11-27 05:35:55,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:36:44] 2025-11-27 05:35:55,564 | INFO     | time since job start (88203s) is within the limit (172800.0s)
[2025-11-27 00:36:44] 2025-11-27 05:35:57,571 | INFO     | time since job start (88205s) is within the limit (172800.0s)
[2025-11-27 00:36:44] 2025-11-27 05:35:57,691 | INFO     | monitor loop #4837: job 0:6891564785 is in state 'finished'
[2025-11-27 00:36:44] 2025-11-27 05:35:57,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:36:44] 2025-11-27 05:35:59,598 | INFO     | time since job start (88207s) is within the limit (172800.0s)
[2025-11-27 00:36:44] 2025-11-27 05:36:00,201 | INFO     | monitor loop #4838: job 0:6891564785 is in state 'finished'
[2025-11-27 00:36:44] 2025-11-27 05:36:00,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:36:44] 2025-11-27 05:36:01,601 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:36:44] 2025-11-27 05:36:01,605 | INFO     | time since job start (88209s) is within the limit (172800.0s)
[2025-11-27 00:36:44] 2025-11-27 05:36:01,629 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2594.391895833333
[2025-11-27 00:36:44] 2025-11-27 05:36:01,667 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6891564785/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:36:44] 2025-11-27 05:36:01,668 | INFO     | extracted standard info from prmon json
[2025-11-27 00:36:44] 2025-11-27 05:36:01,668 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:36:44] 2025-11-27 05:36:01,668 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:36:44] 2025-11-27 05:36:01,723 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:36:44] 2025-11-27 05:36:01,729 | INFO     | sum of square deviations: 931676047369.7642
[2025-11-27 00:36:44] 2025-11-27 05:36:01,998 | INFO     | sum of deviations: 4398756729737.806
[2025-11-27 00:36:44] 2025-11-27 05:36:01,998 | INFO     | mean x: 1764177685.1517673
[2025-11-27 00:36:44] 2025-11-27 05:36:01,998 | INFO     | mean y: 2996692.503118503
[2025-11-27 00:36:44] 2025-11-27 05:36:01,998 | INFO     | intersect: -8326280943.13275
[2025-11-27 00:36:44] 2025-11-27 05:36:02,000 | INFO     | chi2: 18.562273782461855
[2025-11-27 00:36:44] 2025-11-27 05:36:02,020 | INFO     | sum of square deviations: 922025895357.4222
[2025-11-27 00:36:44] 2025-11-27 05:36:02,309 | INFO     | sum of deviations: 4898079801552.336
[2025-11-27 00:36:44] 2025-11-27 05:36:02,310 | INFO     | mean x: 1764177532.662726
[2025-11-27 00:36:44] 2025-11-27 05:36:02,310 | INFO     | mean y: 3004581.4728789986
[2025-11-27 00:36:44] 2025-11-27 05:36:02,310 | INFO     | intersect: -9368838858.713829
[2025-11-27 00:36:44] 2025-11-27 05:36:02,334 | INFO     | chi2: 15.352928385719748
[2025-11-27 00:36:44] 2025-11-27 05:36:02,334 | INFO     | current chi2=15.352928385719748 (change=17.289613515852697 %)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,335 | INFO     | right removable region: 1437
[2025-11-27 00:36:44] 2025-11-27 05:36:02,337 | INFO     | sum of square deviations: 922023121077.4226
[2025-11-27 00:36:44] 2025-11-27 05:36:02,399 | INFO     | sum of deviations: 3811877785294.2407
[2025-11-27 00:36:44] 2025-11-27 05:36:02,400 | INFO     | mean x: 1764177837.662726
[2025-11-27 00:36:44] 2025-11-27 05:36:02,400 | INFO     | mean y: 3005963.6293463144
[2025-11-27 00:36:44] 2025-11-27 05:36:02,400 | INFO     | intersect: -7290553335.4441185
[2025-11-27 00:36:44] 2025-11-27 05:36:02,402 | INFO     | chi2: 14.677770806776293
[2025-11-27 00:36:44] 2025-11-27 05:36:02,402 | INFO     | current chi2=14.677770806776293 (change=20.926870388883863 %)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,402 | INFO     | left removable region: 10
[2025-11-27 00:36:44] 2025-11-27 05:36:02,404 | INFO     | sum of square deviations: 901025120033.0422
[2025-11-27 00:36:44] 2025-11-27 05:36:02,444 | INFO     | sum of deviations: 3974689304946.9307
[2025-11-27 00:36:44] 2025-11-27 05:36:02,444 | INFO     | mean x: 1764177807.187106
[2025-11-27 00:36:44] 2025-11-27 05:36:02,444 | INFO     | mean y: 3022349.4085494042
[2025-11-27 00:36:44] 2025-11-27 05:36:02,444 | INFO     | intersect: -7779289715.3141
[2025-11-27 00:36:44] 2025-11-27 05:36:02,446 | INFO     | chi2: 8.882067983935157
[2025-11-27 00:36:44] 2025-11-27 05:36:02,446 | INFO     | current memory leak: 4.41 B/s (using 1427 data points, chi2=8.88)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | could have reported an average CPU frequency of 2625 MHz (51 samples)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | ..............................
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | . Timing measurements:
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | . get job = 0 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | . initial setup = 6 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | . payload setup = 48 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,448 | INFO     | . stage-in = 0 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,449 | INFO     | . payload execution = 88041 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,449 | INFO     | . stage-out = 9 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,449 | INFO     | . log creation = 2 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,449 | INFO     | ..............................
[2025-11-27 00:36:44] 2025-11-27 05:36:02,559 | INFO     | 
[2025-11-27 00:36:44] 2025-11-27 05:36:02,559 | INFO     | job summary report
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | --------------------------------------------------
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | PanDA job id: 6891564785
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | task id: 47493068
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | errors: (none)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | pilot state: finished 
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | transexitcode: 0
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | exeerrorcode: 0
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | exeerrordiag: 
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | exitcode: 0
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | exitmsg: OK
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | cpuconsumptiontime: 277150 s
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | nevents: 1000
[2025-11-27 00:36:44] 2025-11-27 05:36:02,560 | INFO     | neventsw: 0
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | pid: 3385917
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | pgrp: 3385917
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | corecount: 9
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | event service: False
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | sizes: {0: 2284133, 2: 2284161, 3: 2284332, 14: 2284360, 26: 2284388, 36: 2284678, 37: 2284834, 88094: 2349182, 88095: 2349181, 88105: 2358231, 88109: 2358287, 881
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | --------------------------------------------------
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | 
[2025-11-27 00:36:44] 2025-11-27 05:36:02,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:36:44] 2025-11-27 05:36:02,703 | INFO     | job 6891564785 has completed (purged errors)
[2025-11-27 00:36:44] 2025-11-27 05:36:02,703 | INFO     | overall cleanup function is called
[2025-11-27 00:36:44] 2025-11-27 05:36:03,888 | INFO     | --- collectZombieJob: --- 10, [3385917]
[2025-11-27 00:36:44] 2025-11-27 05:36:03,888 | INFO     | zombie collector waiting for pid 3385917
[2025-11-27 00:36:44] 2025-11-27 05:36:03,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:36:44] 2025-11-27 05:36:03,889 | INFO     | collected zombie processes
[2025-11-27 00:36:44] 2025-11-27 05:36:03,889 | INFO     | will attempt to kill all subprocesses of pid=3385917
[2025-11-27 00:36:44] 2025-11-27 05:36:05,000 | INFO     | PID=3341680 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:36:44] 2025-11-27 05:36:05,001 | INFO     | .. there are 40 such processes running
[2025-11-27 00:36:44] 2025-11-27 05:36:05,034 | INFO     | process IDs to be killed: [3385917] (in reverse order)
[2025-11-27 00:36:44] 2025-11-27 05:36:05,297 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:36:44] 2025-11-27 05:36:05,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:36:44] 2025-11-27 05:36:05,392 | INFO     | did not find any defunct processes belonging to 3385917
[2025-11-27 00:36:44] 2025-11-27 05:36:05,455 | INFO     | did not find any defunct processes belonging to 3385917
[2025-11-27 00:36:44] 2025-11-27 05:36:05,472 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:36:44] 2025-11-27 05:36:05,472 | INFO     | ready for new job
[2025-11-27 00:36:44] 2025-11-27 05:36:05,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:36:44] 2025-11-27 05:36:05,501 | INFO     | ***************************************
[2025-11-27 00:36:44] 2025-11-27 05:36:05,501 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:36:44] 2025-11-27 05:36:05,501 | INFO     | ***************************************
[2025-11-27 00:36:44] 2025-11-27 05:36:05,501 | INFO     | 
[2025-11-27 00:36:44] 2025-11-27 05:36:05,527 | INFO     | architecture information:
[2025-11-27 00:36:44] 2025-11-27 05:36:05,528 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:36:44] 2025-11-27 05:36:05,565 | INFO     | cat /etc/os-release:
[2025-11-27 00:36:44] NAME="CentOS Linux"
[2025-11-27 00:36:44] VERSION="7 (Core)"
[2025-11-27 00:36:44] ID="centos"
[2025-11-27 00:36:44] ID_LIKE="rhel fedora"
[2025-11-27 00:36:44] VERSION_ID="7"
[2025-11-27 00:36:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:36:44] ANSI_COLOR="0;31"
[2025-11-27 00:36:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:36:44] HOME_URL="https://www.centos.org/"
[2025-11-27 00:36:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:36:44] 
[2025-11-27 00:36:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:36:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:36:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:36:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:36:44] 
[2025-11-27 00:36:44] 2025-11-27 05:36:05,566 | INFO     | ***************************************
[2025-11-27 00:36:44] 2025-11-27 05:36:06,073 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 00:36:44] 2025-11-27 05:36:06,249 | INFO     | sufficient remaining disk space (64317554688 B)
[2025-11-27 00:36:44] 2025-11-27 05:36:06,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:36:44] 2025-11-27 05:36:06,250 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:36:44] 2025-11-27 05:36:06,250 | INFO     | update_server=False
[2025-11-27 00:36:44] 2025-11-27 05:36:06,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:36:44] 2025-11-27 05:36:06,260 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:36:44] 2025-11-27 05:36:06,273 | INFO     | all data control threads have been joined
[2025-11-27 00:36:44] 2025-11-27 05:36:06,294 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:36:44] 2025-11-27 05:36:06,294 | INFO     | aborting loop
[2025-11-27 00:36:44] 2025-11-27 05:36:06,764 | INFO     | all payload control threads have been joined
[2025-11-27 00:36:44] 2025-11-27 05:36:06,867 | INFO     | all job control threads have been joined
[2025-11-27 00:36:44] 2025-11-27 05:36:07,266 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:07,279 | INFO     | [data] control thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:07,300 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:07,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:36:44] 2025-11-27 05:36:07,770 | INFO     | [payload] control thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:07,880 | INFO     | [job] control thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:07,927 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,267 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,268 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,377 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,378 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,443 | INFO     | [job] validate thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,446 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,491 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,506 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:08,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:36:44] 2025-11-27 05:36:08,608 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:12,521 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:36:44] 2025-11-27 05:36:34,125 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:36:44] 2025-11-27 05:36:35,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139770963134272)>', '<ExcThread(monitor, started 139770600593152)>']
[2025-11-27 00:36:44] 2025-11-27 05:36:38,577 | INFO     | PID=3341680 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:36:44] 2025-11-27 05:36:38,578 | INFO     | .. there are 40 such processes running
[2025-11-27 00:36:44] 2025-11-27 05:36:38,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:36:44] 2025-11-27 05:36:38,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:36:44] 2025-11-27 05:36:38,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:36:44] 2025-11-27 05:36:38,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:36:44] 2025-11-27 05:36:38,580 | INFO     | [monitor] control thread has ended
[2025-11-27 00:36:44] 2025-11-27 05:36:40,102 | INFO     | all workflow threads have been joined
[2025-11-27 00:36:44] 2025-11-27 05:36:40,102 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:36:44] 2025-11-27 05:36:40,103 | INFO     | traces error code: 0
[2025-11-27 00:36:44] 2025-11-27 05:36:40,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:36:44] 2025-11-27 05:36:43,562 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:36:44] 2025-11-27 05:36:43,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:36:44] 2025-11-27 05:36:43,588 [wrapper] pilotpid: 3341680
[2025-11-27 00:36:44] 2025-11-27 05:36:43,618 [wrapper] Pilot exit status: 0
[2025-11-27 00:36:44] 2025-11-27 05:36:43,784 [wrapper] pandaids: 6891564785
[2025-11-27 00:36:44] 2025-11-27 05:36:43,914 [wrapper] cleanup supervisor_pilot  584737 3341681
[2025-11-27 00:36:44] 2025-11-27 05:36:43,927 [wrapper] Test setup, not cleaning
[2025-11-27 00:36:44] 2025-11-27 05:36:43,942 [wrapper] apfmon messages muted
[2025-11-27 00:36:44] 2025-11-27 05:36:43,984 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:36:44] 2025-11-27 05:36:43,998 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:36:44]  *** Error codes and diagnostics ***
[2025-11-27 00:36:44]     "exeErrorCode": 0,
[2025-11-27 00:36:44]     "exeErrorDiag": "",
[2025-11-27 00:36:44]     "pilotErrorCode": 0,
[2025-11-27 00:36:44]     "pilotErrorDiag": "",
[2025-11-27 00:36:44]  *** Listing of results directory ***
[2025-11-27 00:36:44] total 1348800
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 10:29 queuedata.json
[2025-11-27 00:36:44] -rwx------ 1 boincer umatlas     36292 Nov 18 10:30 runpilot2-wrapper.sh
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:36:44] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 00:36:44] -rw-r--r-- 2 boincer umatlas 412623311 Nov 26 00:04 EVNT.47493065._000123.pool.root.1
[2025-11-27 00:36:44] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 00:36:44] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 00:36:44] -rw-r--r-- 2 boincer umatlas    590097 Nov 26 00:04 input.tar.gz
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 00:04 pandaJob.out
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 00:36:44] drwx------ 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas       533 Nov 27 00:09 boinc_task_state.xml
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas      6878 Nov 27 00:31 init_data.xml
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas 938392277 Nov 27 00:33 HITS.47493068._001230.pool.root.1
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas      1066 Nov 27 00:35 memory_monitor_summary.json
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas   1516240 Nov 27 00:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas   2546233 Nov 27 00:35 log.47493068._001230.job.log.tgz.1
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas      8634 Nov 27 00:36 heartbeat.json
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas        95 Nov 27 00:36 pilot_heartbeat.json
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas      4824 Nov 27 00:36 pilotlog.txt
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas  10571022 Nov 27 00:36 log.47493068._001230.job.log.1
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 00:36 boinc_mmap_file
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas       353 Nov 27 00:36 output.list
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas       620 Nov 27 00:36 runtime_log
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas        29 Nov 27 00:36 wrapper_checkpoint.txt
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas  13137920 Nov 27 00:36 result.tar.gz
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas      8704 Nov 27 00:36 runtime_log.err
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas       661 Nov 27 00:36 8dpMDmSqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2RFKDm4QaEYn.diag
[2025-11-27 00:36:44] -rw-r--r-- 1 boincer umatlas     21858 Nov 27 00:36 stderr.txt
[2025-11-27 00:36:44] HITS file was successfully produced:
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas 938392277 Nov 27 00:33 shared/HITS.pool.root.1
[2025-11-27 00:36:44]  *** Contents of shared directory: ***
[2025-11-27 00:36:44] total 1332792
[2025-11-27 00:36:44] -rw-r--r-- 2 boincer umatlas 412623311 Nov 26 00:04 ATLAS.root_0
[2025-11-27 00:36:44] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 00:36:44] -rw-r--r-- 2 boincer umatlas    590097 Nov 26 00:04 input.tar.gz
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas 938392277 Nov 27 00:33 HITS.pool.root.1
[2025-11-27 00:36:44] -rw------- 1 boincer umatlas  13137920 Nov 27 00:36 result.tar.gz
00:37:05 (3324296): run_atlas exited; CPU time 280983.381402
00:37:05 (3324296): called boinc_finish(0)

</stderr_txt>
]]>

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