Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:28 (1183394): wrapper (7.7.26015): starting
00:04:28 (1183394): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:28] Arguments: --nthreads 9
[2025-11-26 00:04:28] Threads: 9
[2025-11-26 00:04:28] Checking for CVMFS
[2025-11-26 00:04:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:29] 2.13.2.0 6926 30884 180384 153309 0 439 33181700 40960001 25478 16776704 0 155807502 99.669 132908883 39084 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:29] CVMFS is ok
[2025-11-26 00:04:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:29] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:29] Checking for apptainer binary...
[2025-11-26 00:04:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:29] Running /usr/bin/apptainer --version
[2025-11-26 00:04:29] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:29] c-212-11.aglt2.org
[2025-11-26 00:04:29] apptainer works
[2025-11-26 00:04:29] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:29] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:29] Starting ATLAS job with PandaID=6896045905
[2025-11-26 00:04:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:18:34]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:18:34] 2025-11-27 04:17:51,577 | INFO     | job 6896045905 has state=finished
[2025-11-26 23:18:34] 2025-11-27 04:17:51,578 | INFO     | preparing for final server update for job 6896045905 in state='finished'
[2025-11-26 23:18:34] 2025-11-27 04:17:51,578 | INFO     | this job has now completed (state=finished)
[2025-11-26 23:18:34] 2025-11-27 04:17:51,578 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 23:18:34] 2025-11-27 04:17:51,578 | INFO     | log transfer has been attempted: DONE
[2025-11-26 23:18:34] 2025-11-27 04:17:51,579 | INFO     | job 6896045905 has finished - writing final server update
[2025-11-26 23:18:34] 2025-11-27 04:17:51,579 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 23:18:34] 2025-11-27 04:17:51,580 | INFO     | executing command: lscpu
[2025-11-26 23:18:34] 2025-11-27 04:17:51,652 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 23:18:34] 2025-11-27 04:17:52,983 | INFO     | time since job start (83574s) is within the limit (172800.0s)
[2025-11-26 23:18:34] 2025-11-27 04:17:53,471 | INFO     | monitor loop #4784: job 0:6896045905 is in state 'finished'
[2025-11-26 23:18:34] 2025-11-27 04:17:53,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:18:34] 2025-11-27 04:17:54,991 | INFO     | time since job start (83576s) is within the limit (172800.0s)
[2025-11-26 23:18:34] 2025-11-27 04:17:55,974 | INFO     | monitor loop #4785: job 0:6896045905 is in state 'finished'
[2025-11-26 23:18:34] 2025-11-27 04:17:55,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:18:34] 2025-11-27 04:17:56,998 | INFO     | time since job start (83578s) is within the limit (172800.0s)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,590 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:18:34] 2025-11-27 04:17:57,597 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3104.6435312499993
[2025-11-26 23:18:34] 2025-11-27 04:17:57,612 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896045905/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,613 | INFO     | extracted standard info from prmon json
[2025-11-26 23:18:34] 2025-11-27 04:17:57,613 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:18:34] 2025-11-27 04:17:57,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:18:34] 2025-11-27 04:17:57,631 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:18:34] 2025-11-27 04:17:57,633 | INFO     | sum of square deviations: 797323655680.0437
[2025-11-26 23:18:34] 2025-11-27 04:17:57,670 | INFO     | sum of deviations: 30602421609135.043
[2025-11-26 23:18:34] 2025-11-27 04:17:57,670 | INFO     | mean x: 1764175300.518248
[2025-11-26 23:18:34] 2025-11-27 04:17:57,670 | INFO     | mean y: 4266378.656204379
[2025-11-26 23:18:34] 2025-11-27 04:17:57,670 | INFO     | intersect: -67707303388.87454
[2025-11-26 23:18:34] 2025-11-27 04:17:57,671 | INFO     | chi2: 24.04144823906741
[2025-11-26 23:18:34] 2025-11-27 04:17:57,673 | INFO     | sum of square deviations: 788626809536.8278
[2025-11-26 23:18:34] 2025-11-27 04:17:57,709 | INFO     | sum of deviations: 31316733959384.88
[2025-11-26 23:18:34] 2025-11-27 04:17:57,709 | INFO     | mean x: 1764175148.029304
[2025-11-26 23:18:34] 2025-11-27 04:17:57,709 | INFO     | mean y: 4278899.9545787545
[2025-11-26 23:18:34] 2025-11-27 04:17:57,709 | INFO     | intersect: -70051929056.04967
[2025-11-26 23:18:34] 2025-11-27 04:17:57,711 | INFO     | chi2: 19.671998301457037
[2025-11-26 23:18:34] 2025-11-27 04:17:57,711 | INFO     | current chi2=19.671998301457037 (change=18.17465359890427 %)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,711 | INFO     | right removable region: 1364
[2025-11-26 23:18:34] 2025-11-27 04:17:57,712 | INFO     | sum of square deviations: 788624287186.8282
[2025-11-26 23:18:34] 2025-11-27 04:17:57,751 | INFO     | sum of deviations: 29844571127837.984
[2025-11-26 23:18:34] 2025-11-27 04:17:57,752 | INFO     | mean x: 1764175453.029304
[2025-11-26 23:18:34] 2025-11-27 04:17:57,752 | INFO     | mean y: 4279661.851282051
[2025-11-26 23:18:34] 2025-11-27 04:17:57,752 | INFO     | intersect: -66758893430.034004
[2025-11-26 23:18:34] 2025-11-27 04:17:57,753 | INFO     | chi2: 21.25005524524769
[2025-11-26 23:18:34] 2025-11-27 04:17:57,753 | INFO     | current chi2=21.25005524524769 (change=11.61075225611284 %)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,753 | INFO     | left removable region: 10
[2025-11-26 23:18:34] 2025-11-27 04:17:57,755 | INFO     | sum of square deviations: 769712852725.7524
[2025-11-26 23:18:34] 2025-11-27 04:17:57,792 | INFO     | sum of deviations: 30251692383268.79
[2025-11-26 23:18:34] 2025-11-27 04:17:57,792 | INFO     | mean x: 1764175422.5450518
[2025-11-26 23:18:34] 2025-11-27 04:17:57,792 | INFO     | mean y: 4301186.093796159
[2025-11-26 23:18:34] 2025-11-27 04:17:57,792 | INFO     | intersect: -69332324808.8622
[2025-11-26 23:18:34] 2025-11-27 04:17:57,794 | INFO     | chi2: 16.284424561733612
[2025-11-26 23:18:34] 2025-11-27 04:17:57,794 | INFO     | current memory leak: 39.30 B/s (using 1354 data points, chi2=16.28)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,795 | INFO     | could have reported an average CPU frequency of 3070 MHz (49 samples)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,795 | INFO     | ..............................
[2025-11-26 23:18:34] 2025-11-27 04:17:57,795 | INFO     | . Timing measurements:
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . get job = 0 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . initial setup = 4 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . payload setup = 11 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . stage-in = 0 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . payload execution = 83528 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . stage-out = 3 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | . log creation = 0 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,796 | INFO     | ..............................
[2025-11-26 23:18:34] 2025-11-27 04:17:57,886 | INFO     | 
[2025-11-26 23:18:34] 2025-11-27 04:17:57,886 | INFO     | job summary report
[2025-11-26 23:18:34] 2025-11-27 04:17:57,886 | INFO     | --------------------------------------------------
[2025-11-26 23:18:34] 2025-11-27 04:17:57,886 | INFO     | PanDA job id: 6896045905
[2025-11-26 23:18:34] 2025-11-27 04:17:57,886 | INFO     | task id: 47556173
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | errors: (none)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | pilot state: finished 
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | transexitcode: 0
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | exeerrorcode: 0
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | exeerrordiag: 
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | exitcode: 0
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | exitmsg: OK
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | cpuconsumptiontime: 213724 s
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | nevents: 1000
[2025-11-26 23:18:34] 2025-11-27 04:17:57,887 | INFO     | neventsw: 0
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | pid: 1211082
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | pgrp: 1211082
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | corecount: 9
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | event service: False
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | sizes: {0: 2284136, 1: 2284335, 2: 2284335, 8: 2284625, 12: 2284653, 83543: 2348125, 83546: 2357119, 83547: 2357175, 83553: 2357421}
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | --------------------------------------------------
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | 
[2025-11-26 23:18:34] 2025-11-27 04:17:57,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 23:18:34] 2025-11-27 04:17:57,916 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,917 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,918 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:18:34] 2025-11-27 04:17:57,918 | INFO     | job 6896045905 has completed (purged errors)
[2025-11-26 23:18:34] 2025-11-27 04:17:57,918 | INFO     | overall cleanup function is called
[2025-11-26 23:18:34] 2025-11-27 04:17:58,934 | INFO     | --- collectZombieJob: --- 10, [1211082]
[2025-11-26 23:18:34] 2025-11-27 04:17:58,934 | INFO     | zombie collector waiting for pid 1211082
[2025-11-26 23:18:34] 2025-11-27 04:17:58,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:18:34] 2025-11-27 04:17:58,934 | INFO     | collected zombie processes
[2025-11-26 23:18:34] 2025-11-27 04:17:58,934 | INFO     | will attempt to kill all subprocesses of pid=1211082
[2025-11-26 23:18:34] 2025-11-27 04:17:59,391 | INFO     | process IDs to be killed: [1211082] (in reverse order)
[2025-11-26 23:18:34] 2025-11-27 04:17:59,544 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:18:34] 2025-11-27 04:17:59,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:18:34] 2025-11-27 04:17:59,561 | INFO     | did not find any defunct processes belonging to 1211082
[2025-11-26 23:18:34] 2025-11-27 04:17:59,578 | INFO     | did not find any defunct processes belonging to 1211082
[2025-11-26 23:18:34] 2025-11-27 04:17:59,579 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:18:34] 2025-11-27 04:17:59,580 | INFO     | ready for new job
[2025-11-26 23:18:34] 2025-11-27 04:17:59,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:18:34] 2025-11-27 04:17:59,585 | INFO     | ***************************************
[2025-11-26 23:18:34] 2025-11-27 04:17:59,586 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:18:34] 2025-11-27 04:17:59,586 | INFO     | ***************************************
[2025-11-26 23:18:34] 2025-11-27 04:17:59,586 | INFO     | 
[2025-11-26 23:18:34] 2025-11-27 04:17:59,591 | INFO     | architecture information:
[2025-11-26 23:18:34] 2025-11-27 04:17:59,592 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:18:34] 2025-11-27 04:17:59,614 | INFO     | cat /etc/os-release:
[2025-11-26 23:18:34] NAME="CentOS Linux"
[2025-11-26 23:18:34] VERSION="7 (Core)"
[2025-11-26 23:18:34] ID="centos"
[2025-11-26 23:18:34] ID_LIKE="rhel fedora"
[2025-11-26 23:18:34] VERSION_ID="7"
[2025-11-26 23:18:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:18:34] ANSI_COLOR="0;31"
[2025-11-26 23:18:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:18:34] HOME_URL="https://www.centos.org/"
[2025-11-26 23:18:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:18:34] 
[2025-11-26 23:18:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:18:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:18:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:18:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:18:34] 
[2025-11-26 23:18:34] 2025-11-27 04:17:59,615 | INFO     | ***************************************
[2025-11-26 23:18:34] 2025-11-27 04:18:00,117 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 23:18:34] 2025-11-27 04:18:00,146 | INFO     | sufficient remaining disk space (120254889984 B)
[2025-11-26 23:18:34] 2025-11-27 04:18:00,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:18:34] 2025-11-27 04:18:00,146 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:18:34] 2025-11-27 04:18:00,146 | INFO     | update_server=False
[2025-11-26 23:18:34] 2025-11-27 04:18:00,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:18:34] 2025-11-27 04:18:00,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:18:34] 2025-11-27 04:18:00,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:18:34] 2025-11-27 04:18:00,147 | INFO     | aborting loop
[2025-11-26 23:18:34] 2025-11-27 04:18:00,204 | INFO     | all payload control threads have been joined
[2025-11-26 23:18:34] 2025-11-27 04:18:00,916 | INFO     | all job control threads have been joined
[2025-11-26 23:18:34] 2025-11-27 04:18:01,152 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,154 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,155 | INFO     | all data control threads have been joined
[2025-11-26 23:18:34] 2025-11-27 04:18:01,209 | INFO     | [payload] control thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,351 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,565 | INFO     | [job] validate thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,651 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,755 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,921 | INFO     | [job] control thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:01,947 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:02,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:18:34] 2025-11-27 04:18:02,154 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:02,163 | INFO     | [data] control thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:02,388 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:02,410 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:02,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:18:34] 2025-11-27 04:18:03,906 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:06,095 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:10,897 | INFO     | job.realtimelogging is not enabled
[2025-11-26 23:18:34] 2025-11-27 04:18:11,902 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:18:34] 2025-11-27 04:18:28,967 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:18:34] 2025-11-27 04:18:29,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200579319616)>', '<ExcThread(monitor, started 140199904388864)>']
[2025-11-26 23:18:34] 2025-11-27 04:18:30,571 | INFO     | PID=1189230 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:18:34] 2025-11-27 04:18:30,571 | INFO     | .. there are 25 such processes running
[2025-11-26 23:18:34] 2025-11-27 04:18:30,571 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:18:34] 2025-11-27 04:18:30,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:18:34] 2025-11-27 04:18:30,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:18:34] 2025-11-27 04:18:30,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:18:34] 2025-11-27 04:18:30,572 | INFO     | [monitor] control thread has ended
[2025-11-26 23:18:34] 2025-11-27 04:18:34,074 | INFO     | all workflow threads have been joined
[2025-11-26 23:18:34] 2025-11-27 04:18:34,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:18:34] 2025-11-27 04:18:34,075 | INFO     | traces error code: 0
[2025-11-26 23:18:34] 2025-11-27 04:18:34,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:18:34] 2025-11-27 04:18:34,293 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:18:34] 2025-11-27 04:18:34,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:18:34] 2025-11-27 04:18:34,300 [wrapper] pilotpid: 1189230
[2025-11-26 23:18:34] 2025-11-27 04:18:34,303 [wrapper] Pilot exit status: 0
[2025-11-26 23:18:34] 2025-11-27 04:18:34,323 [wrapper] pandaids: 6896045905
[2025-11-26 23:18:34] 2025-11-27 04:18:34,431 [wrapper] cleanup supervisor_pilot 1435226 1189231
[2025-11-26 23:18:34] 2025-11-27 04:18:34,436 [wrapper] Test setup, not cleaning
[2025-11-26 23:18:34] 2025-11-27 04:18:34,452 [wrapper] apfmon messages muted
[2025-11-26 23:18:34] 2025-11-27 04:18:34,455 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:18:34] 2025-11-27 04:18:34,457 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:18:34]  *** Error codes and diagnostics ***
[2025-11-26 23:18:34]     "exeErrorCode": 0,
[2025-11-26 23:18:34]     "exeErrorDiag": "",
[2025-11-26 23:18:34]     "pilotErrorCode": 0,
[2025-11-26 23:18:34]     "pilotErrorDiag": "",
[2025-11-26 23:18:34]  *** Listing of results directory ***
[2025-11-26 23:18:34] total 1324044
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-26 23:18:34] -rwx------. 1 boincer umatlas     36292 Nov 24 13:56 runpilot2-wrapper.sh
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:56 queuedata.json
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:18:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-26 23:18:34] -rw-r--r--. 2 boincer umatlas 409789404 Nov 26 00:04 EVNT.47483658._003040.pool.root.1
[2025-11-26 23:18:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 23:18:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-26 23:18:34] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 00:04 input.tar.gz
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 00:04 pandaJob.out
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 23:18:34] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:03 boinc_task_state.xml
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 23:10 init_data.xml
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas 916632983 Nov 26 23:17 HITS.47556173._000221.pool.root.1
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas      1075 Nov 26 23:17 memory_monitor_summary.json
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas        95 Nov 26 23:17 pilot_heartbeat.json
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas   2510289 Nov 26 23:17 log.47556173._000221.job.log.tgz.1
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas      8641 Nov 26 23:17 heartbeat.json
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:18 wrapper_checkpoint.txt
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:18 boinc_mmap_file
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas      4897 Nov 26 23:18 pilotlog.txt
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas  10224492 Nov 26 23:18 log.47556173._000221.job.log.1
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas       353 Nov 26 23:18 output.list
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:18 runtime_log
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas  12759040 Nov 26 23:18 result.tar.gz
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 23:18 runtime_log.err
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas       666 Nov 26 23:18 4uDNDmmuqh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhrLKDmfDo7Tn.diag
[2025-11-26 23:18:34] -rw-r--r--. 1 boincer umatlas     21709 Nov 26 23:18 stderr.txt
[2025-11-26 23:18:34] HITS file was successfully produced:
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas 916632983 Nov 26 23:17 shared/HITS.pool.root.1
[2025-11-26 23:18:34]  *** Contents of shared directory: ***
[2025-11-26 23:18:34] total 1308404
[2025-11-26 23:18:34] -rw-r--r--. 2 boincer umatlas 409789404 Nov 26 00:04 ATLAS.root_0
[2025-11-26 23:18:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 23:18:34] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 00:04 input.tar.gz
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas 916632983 Nov 26 23:17 HITS.pool.root.1
[2025-11-26 23:18:34] -rw-------. 1 boincer umatlas  12759040 Nov 26 23:18 result.tar.gz
23:18:36 (1183394): run_atlas exited; CPU time 214635.960613
23:18:36 (1183394): called boinc_finish(0)

</stderr_txt>
]]>

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