Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:34:19 (2390052): wrapper (7.7.26015): starting
23:34:19 (2390052): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:34:19] Arguments: --nthreads 8
[2025-11-26 23:34:19] Threads: 8
[2025-11-26 23:34:19] Checking for CVMFS
[2025-11-26 23:34:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:34:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:34:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:34:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:34:20] 2.13.3.0 12359 31018 362064 153347 0 173 23507212 32935936 40949 16776704 0 191877774 99.615 188695875 32521 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:34:20] CVMFS is ok
[2025-11-26 23:34:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:34:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:34:20] Further information can be found at the LHC@home message board.
[2025-11-26 23:34:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:34:20] Checking for apptainer binary...
[2025-11-26 23:34:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:34:20] Running /usr/bin/apptainer --version
[2025-11-26 23:34:20] apptainer version 1.4.4-1.el9
[2025-11-26 23:34:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:34:20] c6-12-29-3.aglt2.org
[2025-11-26 23:34:20] apptainer works
[2025-11-26 23:34:21] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:34:21] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:34:21] Starting ATLAS job with PandaID=6896714099
[2025-11-26 23:34:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:38:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:38:24] 2025-11-28 00:37:36,249 | INFO     | time since job start (72159s) is within the limit (172800.0s)
[2025-11-27 19:38:24] 2025-11-28 00:37:37,210 | INFO     | monitor loop #3876: job 0:6896714099 is in state 'finished'
[2025-11-27 19:38:24] 2025-11-28 00:37:37,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:38:24] 2025-11-28 00:37:38,266 | INFO     | time since job start (72161s) is within the limit (172800.0s)
[2025-11-27 19:38:24] 2025-11-28 00:37:39,715 | INFO     | monitor loop #3877: job 0:6896714099 is in state 'finished'
[2025-11-27 19:38:24] 2025-11-28 00:37:39,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:38:24] 2025-11-28 00:37:40,293 | INFO     | time since job start (72163s) is within the limit (172800.0s)
[2025-11-27 19:38:24] 2025-11-28 00:37:42,305 | INFO     | monitor loop #3878: job 0:6896714099 is in state 'finished'
[2025-11-27 19:38:24] 2025-11-28 00:37:42,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:38:24] 2025-11-28 00:37:44,767 | INFO     | PID=2393873 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:38:24] 2025-11-28 00:37:44,767 | INFO     | .. there are 57 such processes running
[2025-11-27 19:38:24] 2025-11-28 00:37:44,816 | INFO     | monitor loop #3879: job 0:6896714099 is in state 'finished'
[2025-11-27 19:38:24] 2025-11-28 00:37:44,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:38:24] 2025-11-28 00:37:45,768 | INFO     | time since job start (72168s) is within the limit (172800.0s)
[2025-11-27 19:38:24] 2025-11-28 00:37:47,321 | INFO     | monitor loop #3880: job 0:6896714099 is in state 'finished'
[2025-11-27 19:38:24] 2025-11-28 00:37:47,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:38:24] 2025-11-28 00:37:47,456 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:38:24] 2025-11-28 00:37:47,492 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2611.5241874999997
[2025-11-27 19:38:24] 2025-11-28 00:37:47,602 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896714099/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:38:24] 2025-11-28 00:37:47,628 | INFO     | extracted standard info from prmon json
[2025-11-27 19:38:24] 2025-11-28 00:37:47,628 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:38:24] 2025-11-28 00:37:47,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:38:24] 2025-11-28 00:37:47,765 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:38:24] 2025-11-28 00:37:47,767 | INFO     | sum of square deviations: 512049034100.5851
[2025-11-27 19:38:24] 2025-11-28 00:37:47,795 | INFO     | time since job start (72170s) is within the limit (172800.0s)
[2025-11-27 19:38:24] 2025-11-28 00:37:47,921 | INFO     | sum of deviations: 1622232538475.9465
[2025-11-27 19:38:24] 2025-11-28 00:37:47,921 | INFO     | mean x: 1764254197.2656515
[2025-11-27 19:38:24] 2025-11-28 00:37:47,921 | INFO     | mean y: 2933757.2868020306
[2025-11-27 19:38:24] 2025-11-28 00:37:47,921 | INFO     | intersect: -5586434397.609265
[2025-11-27 19:38:24] 2025-11-28 00:37:47,929 | INFO     | chi2: 18.49674621423138
[2025-11-27 19:38:24] 2025-11-28 00:37:47,931 | INFO     | sum of square deviations: 505580119333.7449
[2025-11-27 19:38:24] 2025-11-28 00:37:48,033 | INFO     | sum of deviations: 2052322975831.4165
[2025-11-27 19:38:24] 2025-11-28 00:37:48,033 | INFO     | mean x: 1764254044.7892947
[2025-11-27 19:38:24] 2025-11-28 00:37:48,033 | INFO     | mean y: 2943891.255734919
[2025-11-27 19:38:24] 2025-11-28 00:37:48,033 | INFO     | intersect: -7158767918.330659
[2025-11-27 19:38:24] 2025-11-28 00:37:48,035 | INFO     | chi2: 14.679767343655687
[2025-11-27 19:38:24] 2025-11-28 00:37:48,035 | INFO     | current chi2=14.679767343655687 (change=20.63594767624001 %)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,035 | INFO     | right removable region: 1176
[2025-11-27 19:38:24] 2025-11-28 00:37:48,043 | INFO     | sum of square deviations: 505576034031.1654
[2025-11-27 19:38:24] 2025-11-28 00:37:48,145 | INFO     | sum of deviations: 1253116696521.4214
[2025-11-27 19:38:24] 2025-11-28 00:37:48,146 | INFO     | mean x: 1764254349.7901444
[2025-11-27 19:38:24] 2025-11-28 00:37:48,146 | INFO     | mean y: 2942449.4672897197
[2025-11-27 19:38:24] 2025-11-28 00:37:48,146 | INFO     | intersect: -4369924209.192982
[2025-11-27 19:38:24] 2025-11-28 00:37:48,147 | INFO     | chi2: 16.090537174792765
[2025-11-27 19:38:24] 2025-11-28 00:37:48,148 | INFO     | current chi2=16.090537174792765 (change=13.008823344222995 %)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,148 | INFO     | left removable region: 10
[2025-11-27 19:38:24] 2025-11-28 00:37:48,153 | INFO     | sum of square deviations: 491532869881.8304
[2025-11-27 19:38:24] 2025-11-28 00:37:48,207 | INFO     | sum of deviations: 1681674494669.1545
[2025-11-27 19:38:24] 2025-11-28 00:37:48,214 | INFO     | mean x: 1764254319.3404803
[2025-11-27 19:38:24] 2025-11-28 00:37:48,214 | INFO     | mean y: 2956251.901372213
[2025-11-27 19:38:24] 2025-11-28 00:37:48,214 | INFO     | intersect: -6033062237.885587
[2025-11-27 19:38:24] 2025-11-28 00:37:48,216 | INFO     | chi2: 11.644704243979344
[2025-11-27 19:38:24] 2025-11-28 00:37:48,216 | INFO     | current memory leak: 3.42 B/s (using 1166 data points, chi2=11.64)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | could have reported an average CPU frequency of 2602 MHz (43 samples)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | ..............................
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . Timing measurements:
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . get job = 0 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . initial setup = 4 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . payload setup = 19 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . stage-in = 0 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . payload execution = 72058 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . stage-out = 12 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | . log creation = 4 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,218 | INFO     | ..............................
[2025-11-27 19:38:24] 2025-11-28 00:37:48,464 | INFO     | 
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | job summary report
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | --------------------------------------------------
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | PanDA job id: 6896714099
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | task id: 47556161
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | errors: (none)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | pilot state: finished 
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | transexitcode: 0
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | exeerrorcode: 0
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | exeerrordiag: 
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | exitcode: 0
[2025-11-27 19:38:24] 2025-11-28 00:37:48,465 | INFO     | exitmsg: OK
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | cpuconsumptiontime: 265231 s
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | nevents: 1000
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | neventsw: 0
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | pid: 2408523
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | pgrp: 2408523
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | corecount: 8
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | event service: False
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | sizes: {0: 2284042, 1: 2284241, 12: 2284503, 23: 2284531, 72082: 2340031, 72096: 2349025, 72099: 2349209, 72134: 2349455}
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | --------------------------------------------------
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | 
[2025-11-27 19:38:24] 2025-11-28 00:37:48,466 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 19:38:24] 2025-11-28 00:37:48,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | job 6896714099 has completed (purged errors)
[2025-11-27 19:38:24] 2025-11-28 00:37:48,590 | INFO     | overall cleanup function is called
[2025-11-27 19:38:24] 2025-11-28 00:37:49,622 | INFO     | --- collectZombieJob: --- 10, [2408523]
[2025-11-27 19:38:24] 2025-11-28 00:37:49,622 | INFO     | zombie collector waiting for pid 2408523
[2025-11-27 19:38:24] 2025-11-28 00:37:49,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:38:24] 2025-11-28 00:37:49,622 | INFO     | collected zombie processes
[2025-11-27 19:38:24] 2025-11-28 00:37:49,622 | INFO     | will attempt to kill all subprocesses of pid=2408523
[2025-11-27 19:38:24] 2025-11-28 00:37:51,907 | INFO     | process IDs to be killed: [2408523] (in reverse order)
[2025-11-27 19:38:24] 2025-11-28 00:37:52,315 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:38:24] 2025-11-28 00:37:52,315 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:38:24] 2025-11-28 00:37:52,458 | INFO     | did not find any defunct processes belonging to 2408523
[2025-11-27 19:38:24] 2025-11-28 00:37:52,644 | INFO     | did not find any defunct processes belonging to 2408523
[2025-11-27 19:38:24] 2025-11-28 00:37:52,723 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:38:24] 2025-11-28 00:37:52,723 | INFO     | ready for new job
[2025-11-27 19:38:24] 2025-11-28 00:37:52,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:38:24] 2025-11-28 00:37:52,771 | INFO     | ***************************************
[2025-11-27 19:38:24] 2025-11-28 00:37:52,771 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:38:24] 2025-11-28 00:37:52,771 | INFO     | ***************************************
[2025-11-27 19:38:24] 2025-11-28 00:37:52,771 | INFO     | 
[2025-11-27 19:38:24] 2025-11-28 00:37:52,782 | INFO     | architecture information:
[2025-11-27 19:38:24] 2025-11-28 00:37:52,800 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:38:24] 2025-11-28 00:37:52,890 | INFO     | cat /etc/os-release:
[2025-11-27 19:38:24] NAME="CentOS Linux"
[2025-11-27 19:38:24] VERSION="7 (Core)"
[2025-11-27 19:38:24] ID="centos"
[2025-11-27 19:38:24] ID_LIKE="rhel fedora"
[2025-11-27 19:38:24] VERSION_ID="7"
[2025-11-27 19:38:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:38:24] ANSI_COLOR="0;31"
[2025-11-27 19:38:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:38:24] HOME_URL="https://www.centos.org/"
[2025-11-27 19:38:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:38:24] 
[2025-11-27 19:38:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:38:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:38:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:38:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:38:24] 
[2025-11-27 19:38:24] 2025-11-28 00:37:52,890 | INFO     | ***************************************
[2025-11-27 19:38:24] 2025-11-28 00:37:53,394 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 19:38:24] 2025-11-28 00:37:53,456 | INFO     | sufficient remaining disk space (90686095360 B)
[2025-11-27 19:38:24] 2025-11-28 00:37:53,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:38:24] 2025-11-28 00:37:53,457 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:38:24] 2025-11-28 00:37:53,457 | INFO     | update_server=False
[2025-11-27 19:38:24] 2025-11-28 00:37:53,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:38:24] 2025-11-28 00:37:53,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:38:24] 2025-11-28 00:37:53,458 | INFO     | aborting loop
[2025-11-27 19:38:24] 2025-11-28 00:37:53,480 | INFO     | all job control threads have been joined
[2025-11-27 19:38:24] 2025-11-28 00:37:53,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:38:24] 2025-11-28 00:37:54,233 | INFO     | all data control threads have been joined
[2025-11-27 19:38:24] 2025-11-28 00:37:54,428 | INFO     | all payload control threads have been joined
[2025-11-27 19:38:24] 2025-11-28 00:37:54,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:38:24] 2025-11-28 00:37:54,463 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:54,464 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:54,488 | INFO     | [job] control thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:54,592 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:54,730 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:54,836 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:54,836 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,195 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,238 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,239 | INFO     | [data] control thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,434 | INFO     | [payload] control thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,876 | INFO     | [job] validate thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:55,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:56,450 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:37:56,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:38:24] 2025-11-28 00:38:00,547 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:38:24] 2025-11-28 00:38:07,814 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:38:24] 2025-11-28 00:38:09,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649951065920)>', '<ExcThread(monitor, started 139649678808832)>']
[2025-11-27 19:38:24] 2025-11-28 00:38:14,653 | INFO     | all workflow threads have been joined
[2025-11-27 19:38:24] 2025-11-28 00:38:14,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:38:24] 2025-11-28 00:38:14,653 | INFO     | traces error code: 0
[2025-11-27 19:38:24] 2025-11-28 00:38:14,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:38:24] 2025-11-28 00:38:22,530 | INFO     | PID=2393873 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:38:24] 2025-11-28 00:38:22,530 | INFO     | .. there are 57 such processes running
[2025-11-27 19:38:24] 2025-11-28 00:38:22,530 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:38:24] 2025-11-28 00:38:22,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:38:24] 2025-11-28 00:38:22,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:38:24] 2025-11-28 00:38:22,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:38:24] 2025-11-28 00:38:22,531 | INFO     | [monitor] control thread has ended
[2025-11-27 19:38:24] 2025-11-28 00:38:23,405 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:38:24] 2025-11-28 00:38:23,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:38:24] 2025-11-28 00:38:23,456 [wrapper] pilotpid: 2393873
[2025-11-27 19:38:24] 2025-11-28 00:38:23,472 [wrapper] Pilot exit status: 0
[2025-11-27 19:38:24] 2025-11-28 00:38:23,619 [wrapper] pandaids: 6896714099
[2025-11-27 19:38:24] 2025-11-28 00:38:23,900 [wrapper] cleanup supervisor_pilot 3798482 2393874
[2025-11-27 19:38:24] 2025-11-28 00:38:23,916 [wrapper] Test setup, not cleaning
[2025-11-27 19:38:24] 2025-11-28 00:38:23,934 [wrapper] apfmon messages muted
[2025-11-27 19:38:24] 2025-11-28 00:38:23,976 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:38:24] 2025-11-28 00:38:23,998 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:38:24]  *** Error codes and diagnostics ***
[2025-11-27 19:38:24]     "exeErrorCode": 0,
[2025-11-27 19:38:24]     "exeErrorDiag": "",
[2025-11-27 19:38:24]     "pilotErrorCode": 0,
[2025-11-27 19:38:24]     "pilotErrorDiag": "",
[2025-11-27 19:38:24]  *** Listing of results directory ***
[2025-11-27 19:38:24] total 1329488
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 19:38:24] -rwx------. 1 boincer umatlas     36292 Nov 25 01:27 runpilot2-wrapper.sh
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:27 queuedata.json
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 23:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:38:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 23:34 run_atlas
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 23:34 job.xml
[2025-11-27 19:38:24] -rw-r--r--. 2 boincer umatlas 411830424 Nov 26 23:34 EVNT.47483658._002119.pool.root.1
[2025-11-27 19:38:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:34 start_atlas.sh
[2025-11-27 19:38:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 23:34 shared
[2025-11-27 19:38:24] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 23:34 input.tar.gz
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 23:34 boinc_lockfile
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 23:34 pandaJob.out
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas        57 Nov 26 23:34 setup.sh.local
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas    991570 Nov 26 23:34 agis_schedconf.cvmfs.json
[2025-11-27 19:38:24] drwx------. 5 boincer umatlas      4096 Nov 26 23:34 pilot3
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:03 boinc_task_state.xml
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 19:28 init_data.xml
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas 924201818 Nov 27 19:35 HITS.47556161._001029.pool.root.1
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas      1059 Nov 27 19:36 memory_monitor_summary.json
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:37 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas   2230888 Nov 27 19:37 log.47556161._001029.job.log.tgz.1
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas        95 Nov 27 19:37 pilot_heartbeat.json
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas      7969 Nov 27 19:37 heartbeat.json
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas       823 Nov 27 19:38 pilotlog.txt
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:38 boinc_mmap_file
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas   8492523 Nov 27 19:38 log.47556161._001029.job.log.1
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:38 wrapper_checkpoint.txt
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas       353 Nov 27 19:38 output.list
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:38 runtime_log
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas  10741760 Nov 27 19:38 result.tar.gz
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 19:38 runtime_log.err
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas       662 Nov 27 19:38 oK0NDmTh1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhCMKDm6JfkMn.diag
[2025-11-27 19:38:24] -rw-r--r--. 1 boincer umatlas     21862 Nov 27 19:38 stderr.txt
[2025-11-27 19:38:24] HITS file was successfully produced:
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas 924201818 Nov 27 19:35 shared/HITS.pool.root.1
[2025-11-27 19:38:24]  *** Contents of shared directory: ***
[2025-11-27 19:38:24] total 1315820
[2025-11-27 19:38:24] -rw-r--r--. 2 boincer umatlas 411830424 Nov 26 23:34 ATLAS.root_0
[2025-11-27 19:38:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:34 start_atlas.sh
[2025-11-27 19:38:24] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 23:34 input.tar.gz
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas 924201818 Nov 27 19:35 HITS.pool.root.1
[2025-11-27 19:38:24] -rw-------. 1 boincer umatlas  10741760 Nov 27 19:38 result.tar.gz
19:38:26 (2390052): run_atlas exited; CPU time 268482.400829
19:38:26 (2390052): called boinc_finish(0)

</stderr_txt>
]]>

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