Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:43 (3315751): wrapper (7.7.26015): starting
00:03:43 (3315751): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:43] Arguments: --nthreads 9
[2025-11-26 00:03:43] Threads: 9
[2025-11-26 00:03:43] Checking for CVMFS
[2025-11-26 00:03:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:44] 2.13.3.0 12468 29608 354544 153309 2 390 27007085 32947200 31067 16776704 0 115413309 99.430 166219539 34183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:44] CVMFS is ok
[2025-11-26 00:03:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:44] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:44] Checking for apptainer binary...
[2025-11-26 00:03:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:44] Running /usr/bin/apptainer --version
[2025-11-26 00:03:44] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:45] c6-6-8-1.aglt2.org
[2025-11-26 00:03:45] apptainer works
[2025-11-26 00:03:45] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:45] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:45] Starting ATLAS job with PandaID=6891106304
[2025-11-26 00:03:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:00:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:00:24] 2025-11-27 04:59:13,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:00:24] 2025-11-27 04:59:14,276 | INFO     | time since job start (86051s) is within the limit (172800.0s)
[2025-11-27 00:00:24] 2025-11-27 04:59:15,978 | INFO     | monitor loop #4719: job 0:6891106304 is in state 'finished'
[2025-11-27 00:00:24] 2025-11-27 04:59:15,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:00:24] 2025-11-27 04:59:16,301 | INFO     | time since job start (86053s) is within the limit (172800.0s)
[2025-11-27 00:00:24] 2025-11-27 04:59:18,308 | INFO     | time since job start (86055s) is within the limit (172800.0s)
[2025-11-27 00:00:24] 2025-11-27 04:59:18,484 | INFO     | monitor loop #4720: job 0:6891106304 is in state 'finished'
[2025-11-27 00:00:24] 2025-11-27 04:59:18,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:00:24] 2025-11-27 04:59:20,995 | INFO     | monitor loop #4721: job 0:6891106304 is in state 'finished'
[2025-11-27 00:00:24] 2025-11-27 04:59:20,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:00:24] 2025-11-27 04:59:21,006 | INFO     | PID=3329252 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:00:24] 2025-11-27 04:59:21,007 | INFO     | .. there are 41 such processes running
[2025-11-27 00:00:24] 2025-11-27 04:59:22,007 | INFO     | time since job start (86059s) is within the limit (172800.0s)
[2025-11-27 00:00:24] 2025-11-27 04:59:22,011 | INFO     | 86064s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 00:00:24] 2025-11-27 04:59:23,271 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:00:24] 2025-11-27 04:59:23,284 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2612.323927083333
[2025-11-27 00:00:24] 2025-11-27 04:59:23,303 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891106304/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:00:24] 2025-11-27 04:59:23,303 | INFO     | extracted standard info from prmon json
[2025-11-27 00:00:24] 2025-11-27 04:59:23,304 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:00:24] 2025-11-27 04:59:23,304 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:00:24] 2025-11-27 04:59:23,329 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:00:24] 2025-11-27 04:59:23,331 | INFO     | sum of square deviations: 865457556326.077
[2025-11-27 00:00:24] 2025-11-27 04:59:23,380 | INFO     | sum of deviations: 4723837270295.268
[2025-11-27 00:00:24] 2025-11-27 04:59:23,380 | INFO     | mean x: 1764176581.0994318
[2025-11-27 00:00:24] 2025-11-27 04:59:23,380 | INFO     | mean y: 3025330.840909091
[2025-11-27 00:00:24] 2025-11-27 04:59:23,380 | INFO     | intersect: -9626196835.242657
[2025-11-27 00:00:24] 2025-11-27 04:59:23,404 | INFO     | chi2: 22.3681048510984
[2025-11-27 00:00:24] 2025-11-27 04:59:23,406 | INFO     | sum of square deviations: 856271732698.752
[2025-11-27 00:00:24] 2025-11-27 04:59:23,514 | INFO     | monitor loop #4722: job 0:6891106304 is in state 'finished'
[2025-11-27 00:00:24] 2025-11-27 04:59:23,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:00:24] 2025-11-27 04:59:23,691 | INFO     | sum of deviations: 5209245834936.626
[2025-11-27 00:00:24] 2025-11-27 04:59:23,692 | INFO     | mean x: 1764176428.619387
[2025-11-27 00:00:24] 2025-11-27 04:59:23,692 | INFO     | mean y: 3033387.079828938
[2025-11-27 00:00:24] 2025-11-27 04:59:23,702 | INFO     | intersect: -10729574454.491991
[2025-11-27 00:00:24] 2025-11-27 04:59:23,704 | INFO     | chi2: 19.12195591429373
[2025-11-27 00:00:24] 2025-11-27 04:59:23,705 | INFO     | current chi2=19.12195591429373 (change=14.512400395178174 %)
[2025-11-27 00:00:24] 2025-11-27 04:59:23,705 | INFO     | right removable region: 1402
[2025-11-27 00:00:24] 2025-11-27 04:59:23,719 | INFO     | sum of square deviations: 856267009356.9911
[2025-11-27 00:00:24] 2025-11-27 04:59:23,805 | INFO     | sum of deviations: 4137485680442.507
[2025-11-27 00:00:24] 2025-11-27 04:59:23,805 | INFO     | mean x: 1764176733.6186743
[2025-11-27 00:00:24] 2025-11-27 04:59:23,805 | INFO     | mean y: 3035060.4383464004
[2025-11-27 00:00:24] 2025-11-27 04:59:23,806 | INFO     | intersect: -8521474109.427295
[2025-11-27 00:00:24] 2025-11-27 04:59:23,808 | INFO     | chi2: 18.427167491727353
[2025-11-27 00:00:24] 2025-11-27 04:59:23,808 | INFO     | current chi2=18.427167491727353 (change=17.618557251968202 %)
[2025-11-27 00:00:24] 2025-11-27 04:59:23,808 | INFO     | left removable region: 10
[2025-11-27 00:00:24] 2025-11-27 04:59:23,810 | INFO     | sum of square deviations: 836282850745.3088
[2025-11-27 00:00:24] 2025-11-27 04:59:23,885 | INFO     | sum of deviations: 4281075898254.808
[2025-11-27 00:00:24] 2025-11-27 04:59:23,885 | INFO     | mean x: 1764176703.1623564
[2025-11-27 00:00:24] 2025-11-27 04:59:23,902 | INFO     | mean y: 3052030.2442528736
[2025-11-27 00:00:24] 2025-11-27 04:59:23,903 | INFO     | intersect: -9028072256.759857
[2025-11-27 00:00:24] 2025-11-27 04:59:23,904 | INFO     | chi2: 12.551793302370266
[2025-11-27 00:00:24] 2025-11-27 04:59:23,905 | INFO     | current memory leak: 5.12 B/s (using 1392 data points, chi2=12.55)
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | could have reported an average CPU frequency of 2623 MHz (50 samples)
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | ..............................
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . Timing measurements:
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . get job = 0 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . initial setup = 5 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . payload setup = 57 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . stage-in = 0 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . payload execution = 85888 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . stage-out = 8 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,932 | INFO     | . log creation = 1 s
[2025-11-27 00:00:24] 2025-11-27 04:59:23,933 | INFO     | ..............................
[2025-11-27 00:00:24] 2025-11-27 04:59:24,044 | INFO     | time since job start (86061s) is within the limit (172800.0s)
[2025-11-27 00:00:24] 2025-11-27 04:59:24,263 | INFO     | 
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | job summary report
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | --------------------------------------------------
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | PanDA job id: 6891106304
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | task id: 47483661
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | errors: (none)
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | pilot state: finished 
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | transexitcode: 0
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | exeerrorcode: 0
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | exeerrordiag: 
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | exitcode: 0
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | exitmsg: OK
[2025-11-27 00:00:24] 2025-11-27 04:59:24,264 | INFO     | cpuconsumptiontime: 265570 s
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | nevents: 1000
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | neventsw: 0
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | pid: 3370511
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | pgrp: 3370511
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | corecount: 9
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | event service: False
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | sizes: {0: 2284133, 1: 2284133, 2: 2284360, 13: 2284360, 25: 2284416, 33: 2284706, 36: 2284890, 85950: 2348373, 85959: 2357367, 85960: 2357423, 85990: 2357669}
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | --------------------------------------------------
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | 
[2025-11-27 00:00:24] 2025-11-27 04:59:24,265 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 00:00:24] 2025-11-27 04:59:24,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | job 6891106304 has completed (purged errors)
[2025-11-27 00:00:24] 2025-11-27 04:59:24,423 | INFO     | overall cleanup function is called
[2025-11-27 00:00:24] 2025-11-27 04:59:25,441 | INFO     | --- collectZombieJob: --- 10, [3370511]
[2025-11-27 00:00:24] 2025-11-27 04:59:25,441 | INFO     | zombie collector waiting for pid 3370511
[2025-11-27 00:00:24] 2025-11-27 04:59:25,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:00:24] 2025-11-27 04:59:25,442 | INFO     | collected zombie processes
[2025-11-27 00:00:24] 2025-11-27 04:59:25,442 | INFO     | will attempt to kill all subprocesses of pid=3370511
[2025-11-27 00:00:24] 2025-11-27 04:59:26,589 | INFO     | process IDs to be killed: [3370511] (in reverse order)
[2025-11-27 00:00:24] 2025-11-27 04:59:26,949 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:00:24] 2025-11-27 04:59:26,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:00:24] 2025-11-27 04:59:26,995 | INFO     | did not find any defunct processes belonging to 3370511
[2025-11-27 00:00:24] 2025-11-27 04:59:27,040 | INFO     | did not find any defunct processes belonging to 3370511
[2025-11-27 00:00:24] 2025-11-27 04:59:27,042 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:00:24] 2025-11-27 04:59:27,042 | INFO     | ready for new job
[2025-11-27 00:00:24] 2025-11-27 04:59:27,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:00:24] 2025-11-27 04:59:27,052 | INFO     | ***************************************
[2025-11-27 00:00:24] 2025-11-27 04:59:27,053 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:00:24] 2025-11-27 04:59:27,053 | INFO     | ***************************************
[2025-11-27 00:00:24] 2025-11-27 04:59:27,053 | INFO     | 
[2025-11-27 00:00:24] 2025-11-27 04:59:27,067 | INFO     | architecture information:
[2025-11-27 00:00:24] 2025-11-27 04:59:27,080 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:00:24] 2025-11-27 04:59:27,179 | INFO     | cat /etc/os-release:
[2025-11-27 00:00:24] NAME="CentOS Linux"
[2025-11-27 00:00:24] VERSION="7 (Core)"
[2025-11-27 00:00:24] ID="centos"
[2025-11-27 00:00:24] ID_LIKE="rhel fedora"
[2025-11-27 00:00:24] VERSION_ID="7"
[2025-11-27 00:00:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:00:24] ANSI_COLOR="0;31"
[2025-11-27 00:00:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:00:24] HOME_URL="https://www.centos.org/"
[2025-11-27 00:00:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:00:24] 
[2025-11-27 00:00:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:00:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:00:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:00:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:00:24] 
[2025-11-27 00:00:24] 2025-11-27 04:59:27,180 | INFO     | ***************************************
[2025-11-27 00:00:24] 2025-11-27 04:59:27,683 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 00:00:24] 2025-11-27 04:59:27,772 | INFO     | sufficient remaining disk space (63417876480 B)
[2025-11-27 00:00:24] 2025-11-27 04:59:27,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:00:24] 2025-11-27 04:59:27,772 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:00:24] 2025-11-27 04:59:27,772 | INFO     | update_server=False
[2025-11-27 00:00:24] 2025-11-27 04:59:27,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:00:24] 2025-11-27 04:59:27,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:00:24] 2025-11-27 04:59:27,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:00:24] 2025-11-27 04:59:27,779 | INFO     | aborting loop
[2025-11-27 00:00:24] 2025-11-27 04:59:27,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:00:24] 2025-11-27 04:59:28,009 | INFO     | all payload control threads have been joined
[2025-11-27 00:00:24] 2025-11-27 04:59:28,051 | INFO     | all data control threads have been joined
[2025-11-27 00:00:24] 2025-11-27 04:59:28,782 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:28,786 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,015 | INFO     | [payload] control thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,057 | INFO     | [data] control thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,063 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,182 | INFO     | [job] validate thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,198 | INFO     | all job control threads have been joined
[2025-11-27 00:00:24] 2025-11-27 04:59:29,210 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,220 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,221 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:00:24] 2025-11-27 04:59:29,730 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,788 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:29,939 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:30,156 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:30,204 | INFO     | [job] control thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:30,305 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:31,790 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:00:24] 2025-11-27 04:59:41,566 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:00:24] 2025-11-27 04:59:43,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366331889472)>', '<ExcThread(monitor, started 140366051247872)>']
[2025-11-27 00:00:24] 2025-11-27 04:59:48,518 | INFO     | all workflow threads have been joined
[2025-11-27 00:00:24] 2025-11-27 04:59:48,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:00:24] 2025-11-27 04:59:48,519 | INFO     | traces error code: 0
[2025-11-27 00:00:24] 2025-11-27 04:59:48,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:00:24] 2025-11-27 04:59:59,095 | INFO     | PID=3329252 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:00:24] 2025-11-27 04:59:59,096 | INFO     | .. there are 41 such processes running
[2025-11-27 00:00:24] 2025-11-27 04:59:59,096 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:00:24] 2025-11-27 04:59:59,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:00:24] 2025-11-27 04:59:59,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:00:24] 2025-11-27 04:59:59,096 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:00:24] 2025-11-27 04:59:59,096 | INFO     | [monitor] control thread has ended
[2025-11-27 00:00:24] 2025-11-27 04:59:59,337 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:00:24] 2025-11-27 04:59:59,362 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:00:24] 2025-11-27 04:59:59,365 [wrapper] pilotpid: 3329252
[2025-11-27 00:00:24] 2025-11-27 04:59:59,368 [wrapper] Pilot exit status: 0
[2025-11-27 00:00:24] 2025-11-27 04:59:59,382 [wrapper] pandaids: 6891106304
[2025-11-27 00:00:24] 2025-11-27 04:59:59,482 [wrapper] cleanup supervisor_pilot  357799 3329253
[2025-11-27 00:00:24] 2025-11-27 04:59:59,492 [wrapper] Test setup, not cleaning
[2025-11-27 00:00:24] 2025-11-27 04:59:59,544 [wrapper] apfmon messages muted
[2025-11-27 00:00:24] 2025-11-27 04:59:59,564 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:00:24] 2025-11-27 04:59:59,576 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:00:24]  *** Error codes and diagnostics ***
[2025-11-27 00:00:24]     "exeErrorCode": 0,
[2025-11-27 00:00:24]     "exeErrorDiag": "",
[2025-11-27 00:00:24]     "pilotErrorCode": 0,
[2025-11-27 00:00:24]     "pilotErrorDiag": "",
[2025-11-27 00:00:24]  *** Listing of results directory ***
[2025-11-27 00:00:24] total 1322676
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 00:00:24] -rwx------ 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:00:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 00:00:24] -rw-r--r-- 2 boincer umatlas 409211244 Nov 26 00:03 EVNT.47483658._000256.pool.root.1
[2025-11-27 00:00:24] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-27 00:00:24] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 00:00:24] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 00:03 input.tar.gz
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 00:03 pandaJob.out
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 00:00:24] drwx------ 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas       533 Nov 26 23:24 boinc_task_state.xml
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas      6877 Nov 26 23:54 init_data.xml
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas 915664965 Nov 26 23:57 HITS.47483661._002258.pool.root.1
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas      1059 Nov 26 23:58 memory_monitor_summary.json
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas   1516240 Nov 26 23:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas   2518157 Nov 26 23:58 log.47483661._002258.job.log.tgz.1
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas        95 Nov 26 23:58 pilot_heartbeat.json
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas      8621 Nov 26 23:59 heartbeat.json
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas       823 Nov 26 23:59 pilotlog.txt
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas  10293326 Nov 26 23:59 log.47483661._002258.job.log.1
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas       353 Nov 27 00:00 output.list
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas       620 Nov 27 00:00 runtime_log
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas  12830720 Nov 27 00:00 result.tar.gz
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas       660 Nov 27 00:00 XmiNDmPsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3PKODmN8yk8n.diag
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas      8704 Nov 27 00:00 runtime_log.err
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas        29 Nov 27 00:00 wrapper_checkpoint.txt
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 00:00 boinc_mmap_file
[2025-11-27 00:00:24] -rw-r--r-- 1 boincer umatlas     21907 Nov 27 00:00 stderr.txt
[2025-11-27 00:00:24] HITS file was successfully produced:
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas 915664965 Nov 26 23:57 shared/HITS.pool.root.1
[2025-11-27 00:00:24]  *** Contents of shared directory: ***
[2025-11-27 00:00:24] total 1306968
[2025-11-27 00:00:24] -rw-r--r-- 2 boincer umatlas 409211244 Nov 26 00:03 ATLAS.root_0
[2025-11-27 00:00:24] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-27 00:00:24] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 00:03 input.tar.gz
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas 915664965 Nov 26 23:57 HITS.pool.root.1
[2025-11-27 00:00:24] -rw------- 1 boincer umatlas  12830720 Nov 27 00:00 result.tar.gz
00:00:25 (3315751): run_atlas exited; CPU time 269279.539904
00:00:25 (3315751): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN