Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:35 (3314623): wrapper (7.7.26015): starting
00:03:35 (3314623): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:35] Arguments: --nthreads 9
[2025-11-26 00:03:35] Threads: 9
[2025-11-26 00:03:35] Checking for CVMFS
[2025-11-26 00:03:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:36] 2.13.3.0 12468 29608 354544 153309 3 390 27003545 32947200 31032 16776704 0 115410770 99.430 166219539 34183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:36] CVMFS is ok
[2025-11-26 00:03:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:36] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:36] Checking for apptainer binary...
[2025-11-26 00:03:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:36] Running /usr/bin/apptainer --version
[2025-11-26 00:03:37] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:37] c6-6-8-1.aglt2.org
[2025-11-26 00:03:37] apptainer works
[2025-11-26 00:03:37] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:37] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:37] Starting ATLAS job with PandaID=6891104442
[2025-11-26 00:03:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:37:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:37:36] 2025-11-27 05:17:14,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:36] 2025-11-27 05:17:16,438 | INFO     | PID=3327148 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:37:36] 2025-11-27 05:17:16,439 | INFO     | .. there are 43 such processes running
[2025-11-27 00:37:36] 2025-11-27 05:17:16,990 | INFO     | monitor loop #4266: job 0:6891104442 is in state 'finished'
[2025-11-27 00:37:36] 2025-11-27 05:17:16,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:36] 2025-11-27 05:17:17,451 | INFO     | time since job start (87149s) is within the limit (172800.0s)
[2025-11-27 00:37:36] 2025-11-27 05:17:19,458 | INFO     | time since job start (87151s) is within the limit (172800.0s)
[2025-11-27 00:37:36] 2025-11-27 05:17:19,503 | INFO     | monitor loop #4267: job 0:6891104442 is in state 'finished'
[2025-11-27 00:37:36] 2025-11-27 05:17:19,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:36] 2025-11-27 05:17:20,007 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:37:36] 2025-11-27 05:17:20,061 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2647.1590312499993
[2025-11-27 00:37:36] 2025-11-27 05:17:20,118 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891104442/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:37:36] 2025-11-27 05:17:20,119 | INFO     | extracted standard info from prmon json
[2025-11-27 00:37:36] 2025-11-27 05:17:20,120 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:37:36] 2025-11-27 05:17:20,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:37:36] 2025-11-27 05:17:20,273 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:37:36] 2025-11-27 05:17:20,300 | INFO     | sum of square deviations: 899081143670.9978
[2025-11-27 00:37:36] 2025-11-27 05:17:20,583 | INFO     | sum of deviations: 6165898677499.789
[2025-11-27 00:37:36] 2025-11-27 05:17:20,584 | INFO     | mean x: 1764177122.309958
[2025-11-27 00:37:36] 2025-11-27 05:17:20,584 | INFO     | mean y: 3032469.923562412
[2025-11-27 00:37:36] 2025-11-27 05:17:20,606 | INFO     | intersect: -12095694615.945408
[2025-11-27 00:37:36] 2025-11-27 05:17:20,608 | INFO     | chi2: 14.05620905091759
[2025-11-27 00:37:36] 2025-11-27 05:17:20,635 | INFO     | sum of square deviations: 889658591384.1268
[2025-11-27 00:37:36] 2025-11-27 05:17:20,890 | INFO     | sum of deviations: 6684928289121.409
[2025-11-27 00:37:36] 2025-11-27 05:17:20,908 | INFO     | mean x: 1764176969.8304012
[2025-11-27 00:37:36] 2025-11-27 05:17:20,908 | INFO     | mean y: 3040867.9394792398
[2025-11-27 00:37:36] 2025-11-27 05:17:20,908 | INFO     | intersect: -13253051577.91396
[2025-11-27 00:37:36] 2025-11-27 05:17:20,910 | INFO     | chi2: 10.69196123722455
[2025-11-27 00:37:36] 2025-11-27 05:17:20,910 | INFO     | current chi2=10.69196123722455 (change=23.934247146626074 %)
[2025-11-27 00:37:36] 2025-11-27 05:17:20,910 | INFO     | right removable region: 1420
[2025-11-27 00:37:36] 2025-11-27 05:17:20,932 | INFO     | sum of square deviations: 889653711281.4452
[2025-11-27 00:37:36] 2025-11-27 05:17:21,198 | INFO     | sum of deviations: 5566103168673.459
[2025-11-27 00:37:36] 2025-11-27 05:17:21,198 | INFO     | mean x: 1764177274.8289936
[2025-11-27 00:37:36] 2025-11-27 05:17:21,198 | INFO     | mean y: 3042172.5080928924
[2025-11-27 00:37:36] 2025-11-27 05:17:21,199 | INFO     | intersect: -11034502655.33662
[2025-11-27 00:37:36] 2025-11-27 05:17:21,221 | INFO     | chi2: 9.96415845274715
[2025-11-27 00:37:36] 2025-11-27 05:17:21,221 | INFO     | current chi2=9.96415845274715 (change=29.112049937129463 %)
[2025-11-27 00:37:36] 2025-11-27 05:17:21,223 | INFO     | sum of square deviations: 880292286585.658
[2025-11-27 00:37:36] 2025-11-27 05:17:21,517 | INFO     | time since job start (87153s) is within the limit (172800.0s)
[2025-11-27 00:37:36] 2025-11-27 05:17:21,598 | INFO     | sum of deviations: 5120125786626.814
[2025-11-27 00:37:36] 2025-11-27 05:17:21,598 | INFO     | mean x: 1764177427.34887
[2025-11-27 00:37:36] 2025-11-27 05:17:21,599 | INFO     | mean y: 3049436.599576271
[2025-11-27 00:37:36] 2025-11-27 05:17:21,599 | INFO     | intersect: -10258099588.105587
[2025-11-27 00:37:36] 2025-11-27 05:17:21,623 | INFO     | chi2: 7.865353058246533
[2025-11-27 00:37:36] 2025-11-27 05:17:21,623 | INFO     | current chi2=7.865353058246533 (change=21.063548963555164 %)
[2025-11-27 00:37:36] 2025-11-27 05:17:21,623 | INFO     | left removable region: 20
[2025-11-27 00:37:36] 2025-11-27 05:17:21,625 | INFO     | sum of square deviations: 850786993676.5542
[2025-11-27 00:37:36] 2025-11-27 05:17:21,943 | INFO     | sum of deviations: 5423518338428.639
[2025-11-27 00:37:36] 2025-11-27 05:17:21,944 | INFO     | mean x: 1764177549.3821428
[2025-11-27 00:37:36] 2025-11-27 05:17:21,944 | INFO     | mean y: 3065549.8492857143
[2025-11-27 00:37:36] 2025-11-27 05:17:21,944 | INFO     | intersect: -11243050531.417063
[2025-11-27 00:37:36] 2025-11-27 05:17:21,946 | INFO     | chi2: 3.1394776920180085
[2025-11-27 00:37:36] 2025-11-27 05:17:21,969 | INFO     | current memory leak: 6.37 B/s (using 1400 data points, chi2=3.14)
[2025-11-27 00:37:36] 2025-11-27 05:17:21,971 | INFO     | could have reported an average CPU frequency of 2633 MHz (51 samples)
[2025-11-27 00:37:36] 2025-11-27 05:17:21,971 | INFO     | ..............................
[2025-11-27 00:37:36] 2025-11-27 05:17:21,971 | INFO     | . Timing measurements:
[2025-11-27 00:37:36] 2025-11-27 05:17:21,971 | INFO     | . get job = 1 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,972 | INFO     | . initial setup = 5 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,972 | INFO     | . payload setup = 52 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,972 | INFO     | . stage-in = 0 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,972 | INFO     | . payload execution = 86967 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,972 | INFO     | . stage-out = 17 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,995 | INFO     | . log creation = 3 s
[2025-11-27 00:37:36] 2025-11-27 05:17:21,995 | INFO     | ..............................
[2025-11-27 00:37:36] 2025-11-27 05:17:22,654 | INFO     | 
[2025-11-27 00:37:36] 2025-11-27 05:17:22,654 | INFO     | job summary report
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | --------------------------------------------------
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | PanDA job id: 6891104442
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | task id: 47483661
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | errors: (none)
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | pilot state: finished 
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | transexitcode: 0
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | exeerrorcode: 0
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | exeerrordiag: 
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | exitcode: 0
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | exitmsg: OK
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | cpuconsumptiontime: 274105 s
[2025-11-27 00:37:36] 2025-11-27 05:17:22,655 | INFO     | nevents: 1000
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | neventsw: 0
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | pid: 3366309
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | pgrp: 3366309
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | corecount: 9
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | event service: False
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284161, 3: 2284388, 4: 2284388, 15: 2284416, 25: 2284572, 37: 2284600, 43: 2284890, 48: 2284918, 87023: 2348258, 87024: 2348537
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | --------------------------------------------------
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | 
[2025-11-27 00:37:36] 2025-11-27 05:17:22,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 00:37:36] 2025-11-27 05:17:22,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,776 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,777 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,777 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:37:36] 2025-11-27 05:17:22,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:37:36] 2025-11-27 05:17:22,806 | INFO     | job 6891104442 has completed (purged errors)
[2025-11-27 00:37:36] 2025-11-27 05:17:22,806 | INFO     | overall cleanup function is called
[2025-11-27 00:37:36] 2025-11-27 05:17:23,839 | INFO     | --- collectZombieJob: --- 10, [3366309]
[2025-11-27 00:37:36] 2025-11-27 05:17:23,839 | INFO     | zombie collector waiting for pid 3366309
[2025-11-27 00:37:36] 2025-11-27 05:17:23,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:37:36] 2025-11-27 05:17:23,840 | INFO     | collected zombie processes
[2025-11-27 00:37:36] 2025-11-27 05:17:23,840 | INFO     | will attempt to kill all subprocesses of pid=3366309
[2025-11-27 00:37:36] 2025-11-27 05:17:28,193 | INFO     | process IDs to be killed: [3366309] (in reverse order)
[2025-11-27 00:37:36] 2025-11-27 05:17:28,543 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:37:36] 2025-11-27 05:17:28,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:37:36] 2025-11-27 05:17:28,683 | INFO     | did not find any defunct processes belonging to 3366309
[2025-11-27 00:37:36] 2025-11-27 05:17:28,819 | INFO     | did not find any defunct processes belonging to 3366309
[2025-11-27 00:37:36] 2025-11-27 05:17:28,849 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:37:36] 2025-11-27 05:17:28,855 | INFO     | ready for new job
[2025-11-27 00:37:36] 2025-11-27 05:17:28,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:37:36] 2025-11-27 05:17:28,899 | INFO     | ***************************************
[2025-11-27 00:37:36] 2025-11-27 05:17:28,899 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:37:36] 2025-11-27 05:17:28,900 | INFO     | ***************************************
[2025-11-27 00:37:36] 2025-11-27 05:17:28,900 | INFO     | 
[2025-11-27 00:37:36] 2025-11-27 05:17:28,943 | INFO     | architecture information:
[2025-11-27 00:37:36] 2025-11-27 05:17:28,962 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:37:36] 2025-11-27 05:17:29,077 | INFO     | cat /etc/os-release:
[2025-11-27 00:37:36] NAME="CentOS Linux"
[2025-11-27 00:37:36] VERSION="7 (Core)"
[2025-11-27 00:37:36] ID="centos"
[2025-11-27 00:37:36] ID_LIKE="rhel fedora"
[2025-11-27 00:37:36] VERSION_ID="7"
[2025-11-27 00:37:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:37:36] ANSI_COLOR="0;31"
[2025-11-27 00:37:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:37:36] HOME_URL="https://www.centos.org/"
[2025-11-27 00:37:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:37:36] 
[2025-11-27 00:37:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:37:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:37:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:37:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:37:36] 
[2025-11-27 00:37:36] 2025-11-27 05:17:29,078 | INFO     | ***************************************
[2025-11-27 00:37:36] 2025-11-27 05:17:29,613 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 00:37:36] 2025-11-27 05:17:29,756 | INFO     | sufficient remaining disk space (61011394560 B)
[2025-11-27 00:37:36] 2025-11-27 05:17:29,756 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:37:36] 2025-11-27 05:17:29,756 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:37:36] 2025-11-27 05:17:29,756 | INFO     | update_server=False
[2025-11-27 00:37:36] 2025-11-27 05:17:29,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:37:36] 2025-11-27 05:17:29,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:37:36] 2025-11-27 05:17:30,210 | INFO     | all job control threads have been joined
[2025-11-27 00:37:36] 2025-11-27 05:17:30,399 | INFO     | all data control threads have been joined
[2025-11-27 00:37:36] 2025-11-27 05:17:30,513 | INFO     | all payload control threads have been joined
[2025-11-27 00:37:36] 2025-11-27 05:17:30,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:37:36] 2025-11-27 05:17:30,757 | INFO     | aborting loop
[2025-11-27 00:37:36] 2025-11-27 05:17:30,761 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:30,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:37:36] 2025-11-27 05:17:31,216 | INFO     | [job] control thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,405 | INFO     | [data] control thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,406 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,520 | INFO     | [payload] control thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,632 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,668 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:37:36] 2025-11-27 05:17:31,752 | INFO     | [job] validate thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,753 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,758 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,759 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,762 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,766 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:31,774 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:37:36] 2025-11-27 05:17:32,747 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:32,788 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:33,766 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:37:36] 2025-11-27 05:17:35,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140115725547328)>', '<ExcThread(monitor, started 140115221395200)>']
[2025-11-27 00:37:36] 2025-11-27 05:17:40,194 | INFO     | all workflow threads have been joined
[2025-11-27 00:37:36] 2025-11-27 05:17:40,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:37:36] 2025-11-27 05:17:40,195 | INFO     | traces error code: 0
[2025-11-27 00:37:36] 2025-11-27 05:17:40,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:37:36] 2025-11-27 05:18:04,420 | INFO     | PID=3327148 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:37:36] 2025-11-27 05:18:04,421 | INFO     | .. there are 43 such processes running
[2025-11-27 00:37:36] 2025-11-27 05:18:04,430 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:37:36] 2025-11-27 05:18:04,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:37:36] 2025-11-27 05:18:04,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:37:36] 2025-11-27 05:18:04,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:37:36] 2025-11-27 05:18:04,430 | INFO     | [monitor] control thread has ended
[2025-11-27 00:37:36] 2025-11-27 05:18:06,219 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:37:36] 2025-11-27 05:18:06,230 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:37:36] 2025-11-27 05:18:06,247 [wrapper] pilotpid: 3327148
[2025-11-27 00:37:36] 2025-11-27 05:18:06,267 [wrapper] Pilot exit status: 0
[2025-11-27 00:37:36] 2025-11-27 05:18:06,451 [wrapper] pandaids: 6891104442
[2025-11-27 00:37:36] 2025-11-27 05:18:06,982 [wrapper] cleanup supervisor_pilot  423012 3327149
[2025-11-27 00:37:36] 2025-11-27 05:18:07,020 [wrapper] Test setup, not cleaning
[2025-11-27 00:37:36] 2025-11-27 05:18:07,171 [wrapper] apfmon messages muted
[2025-11-27 00:37:36] 2025-11-27 05:18:07,199 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:37:36] 2025-11-27 05:18:07,310 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:37:36]  *** Error codes and diagnostics ***
[2025-11-27 00:37:36]     "exeErrorCode": 0,
[2025-11-27 00:37:36]     "exeErrorDiag": "",
[2025-11-27 00:37:36]     "pilotErrorCode": 0,
[2025-11-27 00:37:36]     "pilotErrorDiag": "",
[2025-11-27 00:37:36]  *** Listing of results directory ***
[2025-11-27 00:37:36] total 1339180
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-27 00:37:36] -rwx------ 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:37:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 00:37:36] -rw-r--r-- 2 boincer umatlas 410991740 Nov 26 00:03 EVNT.47483658._000225.pool.root.1
[2025-11-27 00:37:36] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-27 00:37:36] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 00:37:36] -rw-r--r-- 2 boincer umatlas    590101 Nov 26 00:03 input.tar.gz
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 00:03 pandaJob.out
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 00:37:36] drwx------ 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas       533 Nov 26 23:57 boinc_task_state.xml
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas 932023772 Nov 27 00:15 HITS.47483661._001944.pool.root.1
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas      1062 Nov 27 00:16 memory_monitor_summary.json
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas   1516240 Nov 27 00:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas   2473399 Nov 27 00:16 log.47483661._001944.job.log.tgz.1
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas      8623 Nov 27 00:17 heartbeat.json
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas        95 Nov 27 00:18 pilot_heartbeat.json
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas       823 Nov 27 00:18 pilotlog.txt
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas   9722120 Nov 27 00:18 log.47483661._001944.job.log.1
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas       353 Nov 27 00:18 output.list
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas       620 Nov 27 00:18 runtime_log
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas  12216320 Nov 27 00:18 result.tar.gz
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas      8704 Nov 27 00:18 runtime_log.err
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas       660 Nov 27 00:18 nfxNDmRqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmt6qMDmQUsGBn.diag
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas      6878 Nov 27 00:31 init_data.xml
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas        29 Nov 27 00:37 wrapper_checkpoint.txt
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 00:37 boinc_mmap_file
[2025-11-27 00:37:36] -rw-r--r-- 1 boincer umatlas     21431 Nov 27 00:37 stderr.txt
[2025-11-27 00:37:36] HITS file was successfully produced:
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas 932023772 Nov 27 00:15 shared/HITS.pool.root.1
[2025-11-27 00:37:36]  *** Contents of shared directory: ***
[2025-11-27 00:37:36] total 1324076
[2025-11-27 00:37:36] -rw-r--r-- 2 boincer umatlas 410991740 Nov 26 00:03 ATLAS.root_0
[2025-11-27 00:37:36] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-27 00:37:36] -rw-r--r-- 2 boincer umatlas    590101 Nov 26 00:03 input.tar.gz
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas 932023772 Nov 27 00:15 HITS.pool.root.1
[2025-11-27 00:37:36] -rw------- 1 boincer umatlas  12216320 Nov 27 00:18 result.tar.gz
00:37:38 (3314623): run_atlas exited; CPU time 277472.525207
00:37:38 (3314623): called boinc_finish(0)

</stderr_txt>
]]>

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