Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:50 (3800421): wrapper (7.7.26015): starting
00:09:50 (3800421): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:09:50] Arguments: --nthreads 9
[2025-11-26 00:09:50] Threads: 9
[2025-11-26 00:09:50] Checking for CVMFS
[2025-11-26 00:09:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:09:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:09:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:09:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:09:51] 2.13.3.0 12161 29611 323236 153310 3 230 33522231 40960001 16947 16776704 0 77010202 99.543 91492799 38111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:09:51] CVMFS is ok
[2025-11-26 00:09:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:09:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:09:51] Further information can be found at the LHC@home message board.
[2025-11-26 00:09:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:09:51] Checking for apptainer binary...
[2025-11-26 00:09:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:09:51] Running /usr/bin/apptainer --version
[2025-11-26 00:09:52] apptainer version 1.4.4-1.el9
[2025-11-26 00:09:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:09:52] c6-5-7-1.aglt2.org
[2025-11-26 00:09:52] apptainer works
[2025-11-26 00:09:52] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:09:52] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:09:52] Starting ATLAS job with PandaID=6891104441
[2025-11-26 00:09:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:37:59]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:37:59] 2025-11-27 03:36:59,322 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:37:59] 2025-11-27 03:36:59,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:37:59] 2025-11-27 03:36:59,345 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:37:59] 2025-11-27 03:36:59,347 | INFO     | sum of square deviations: 718075739031.5751
[2025-11-26 22:37:59] 2025-11-27 03:36:59,404 | INFO     | sum of deviations: 4739538027458.852
[2025-11-26 22:37:59] 2025-11-27 03:36:59,405 | INFO     | mean x: 1764174246.3416479
[2025-11-26 22:37:59] 2025-11-27 03:36:59,405 | INFO     | mean y: 3039393.8919123206
[2025-11-26 22:37:59] 2025-11-27 03:36:59,405 | INFO     | intersect: -11641095720.429413
[2025-11-26 22:37:59] 2025-11-27 03:36:59,407 | INFO     | chi2: 9.470538303807977
[2025-11-26 22:37:59] 2025-11-27 03:36:59,408 | INFO     | sum of square deviations: 709966600428.0311
[2025-11-26 22:37:59] 2025-11-27 03:36:59,439 | INFO     | sum of deviations: 5206671925446.152
[2025-11-26 22:37:59] 2025-11-27 03:36:59,439 | INFO     | mean x: 1764174093.8543248
[2025-11-26 22:37:59] 2025-11-27 03:36:59,439 | INFO     | mean y: 3048176.8861911986
[2025-11-26 22:37:59] 2025-11-27 03:36:59,439 | INFO     | intersect: -12934850198.238632
[2025-11-26 22:37:59] 2025-11-27 03:36:59,441 | INFO     | chi2: 6.303829051205788
[2025-11-26 22:37:59] 2025-11-27 03:36:59,441 | INFO     | current chi2=6.303829051205788 (change=33.43747895860257 %)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,443 | INFO     | sum of square deviations: 701918685150.7922
[2025-11-26 22:37:59] 2025-11-27 03:36:59,473 | INFO     | sum of deviations: 5564252738818.817
[2025-11-26 22:37:59] 2025-11-27 03:36:59,474 | INFO     | mean x: 1764173941.3663366
[2025-11-26 22:37:59] 2025-11-27 03:36:59,474 | INFO     | mean y: 3054947.204112719
[2025-11-26 22:37:59] 2025-11-27 03:36:59,474 | INFO     | intersect: -13981912104.772287
[2025-11-26 22:37:59] 2025-11-27 03:36:59,476 | INFO     | chi2: 4.154512308402958
[2025-11-26 22:37:59] 2025-11-27 03:36:59,476 | INFO     | current chi2=4.154512308402958 (change=34.09541606131772 %)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,477 | INFO     | sum of square deviations: 693930800337.3823
[2025-11-26 22:37:59] 2025-11-27 03:36:59,508 | INFO     | sum of deviations: 5635944152652.221
[2025-11-26 22:37:59] 2025-11-27 03:36:59,508 | INFO     | mean x: 1764173788.8685014
[2025-11-26 22:37:59] 2025-11-27 03:36:59,508 | INFO     | mean y: 3056312.658256881
[2025-11-26 22:37:59] 2025-11-27 03:36:59,509 | INFO     | intersect: -14325151838.358618
[2025-11-26 22:37:59] 2025-11-27 03:36:59,510 | INFO     | chi2: 3.8760797098156363
[2025-11-26 22:37:59] 2025-11-27 03:36:59,510 | INFO     | current chi2=3.8760797098156363 (change=6.701932210530727 %)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,510 | INFO     | right removable region: 1307
[2025-11-26 22:37:59] 2025-11-27 03:36:59,512 | INFO     | sum of square deviations: 709963903618.0302
[2025-11-26 22:37:59] 2025-11-27 03:36:59,542 | INFO     | sum of deviations: 4241840312372.007
[2025-11-26 22:37:59] 2025-11-27 03:36:59,542 | INFO     | mean x: 1764174398.8543248
[2025-11-26 22:37:59] 2025-11-27 03:36:59,542 | INFO     | mean y: 3048747.8072837633
[2025-11-26 22:37:59] 2025-11-27 03:36:59,542 | INFO     | intersect: -10537411189.633514
[2025-11-26 22:37:59] 2025-11-27 03:36:59,544 | INFO     | chi2: 6.21916915055102
[2025-11-26 22:37:59] 2025-11-27 03:36:59,544 | INFO     | current chi2=6.21916915055102 (change=34.33140808848876 %)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,545 | INFO     | sum of square deviations: 701914336241.7606
[2025-11-26 22:37:59] 2025-11-27 03:36:59,598 | INFO     | sum of deviations: 4066225232689.057
[2025-11-26 22:37:59] 2025-11-27 03:36:59,599 | INFO     | mean x: 1764174551.3579588
[2025-11-26 22:37:59] 2025-11-27 03:36:59,599 | INFO     | mean y: 3052072.6785986293
[2025-11-26 22:37:59] 2025-11-27 03:36:59,599 | INFO     | intersect: -10216900285.053053
[2025-11-26 22:37:59] 2025-11-27 03:36:59,601 | INFO     | chi2: 5.901347817036932
[2025-11-26 22:37:59] 2025-11-27 03:36:59,601 | INFO     | current chi2=5.901347817036932 (change=5.110350367073209 %)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,601 | INFO     | left removable region: 20
[2025-11-26 22:37:59] 2025-11-27 03:36:59,603 | INFO     | sum of square deviations: 661039891735.4836
[2025-11-26 22:37:59] 2025-11-27 03:36:59,634 | INFO     | sum of deviations: 4736739251508.377
[2025-11-26 22:37:59] 2025-11-27 03:36:59,635 | INFO     | mean x: 1764174368.3947165
[2025-11-26 22:37:59] 2025-11-27 03:36:59,635 | INFO     | mean y: 3073394.497280497
[2025-11-26 22:37:59] 2025-11-27 03:36:59,635 | INFO     | intersect: -12638272584.398796
[2025-11-26 22:37:59] 2025-11-27 03:36:59,637 | INFO     | chi2: 0.17135334309022268
[2025-11-26 22:37:59] 2025-11-27 03:36:59,637 | INFO     | current memory leak: 7.17 B/s (using 1287 data points, chi2=0.17)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,638 | INFO     | could have reported an average CPU frequency of 2964 MHz (47 samples)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | ..............................
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . Timing measurements:
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . get job = 0 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . initial setup = 3 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . payload setup = 30 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . stage-in = 0 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . payload execution = 80696 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . stage-out = 5 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | . log creation = 0 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,639 | INFO     | ..............................
[2025-11-26 22:37:59] 2025-11-27 03:36:59,787 | INFO     | 
[2025-11-26 22:37:59] 2025-11-27 03:36:59,787 | INFO     | job summary report
[2025-11-26 22:37:59] 2025-11-27 03:36:59,787 | INFO     | --------------------------------------------------
[2025-11-26 22:37:59] 2025-11-27 03:36:59,787 | INFO     | PanDA job id: 6891104441
[2025-11-26 22:37:59] 2025-11-27 03:36:59,787 | INFO     | task id: 47483661
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | errors: (none)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | pilot state: finished 
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | transexitcode: 0
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | exeerrorcode: 0
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | exeerrordiag: 
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | exitcode: 0
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | exitmsg: OK
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | cpuconsumptiontime: 240764 s
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | nevents: 1000
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | neventsw: 0
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | pid: 3829854
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | pgrp: 3829854
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | corecount: 9
[2025-11-26 22:37:59] 2025-11-27 03:36:59,788 | INFO     | event service: False
[2025-11-26 22:37:59] 2025-11-27 03:36:59,789 | INFO     | sizes: {0: 2284133, 1: 2284332, 12: 2284332, 18: 2284622, 23: 2284650, 80731: 2347320, 80736: 2356314, 80740: 2356370, 80752: 2356616}
[2025-11-26 22:37:59] 2025-11-27 03:36:59,789 | INFO     | --------------------------------------------------
[2025-11-26 22:37:59] 2025-11-27 03:36:59,789 | INFO     | 
[2025-11-26 22:37:59] 2025-11-27 03:36:59,789 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 22:37:59] 2025-11-27 03:36:59,895 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,895 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,895 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,895 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | job 6891104441 has completed (purged errors)
[2025-11-26 22:37:59] 2025-11-27 03:36:59,897 | INFO     | overall cleanup function is called
[2025-11-26 22:37:59] 2025-11-27 03:37:00,936 | INFO     | --- collectZombieJob: --- 10, [3829854]
[2025-11-26 22:37:59] 2025-11-27 03:37:00,936 | INFO     | zombie collector waiting for pid 3829854
[2025-11-26 22:37:59] 2025-11-27 03:37:00,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:37:59] 2025-11-27 03:37:00,936 | INFO     | collected zombie processes
[2025-11-26 22:37:59] 2025-11-27 03:37:00,937 | INFO     | will attempt to kill all subprocesses of pid=3829854
[2025-11-26 22:37:59] 2025-11-27 03:37:01,328 | INFO     | process IDs to be killed: [3829854] (in reverse order)
[2025-11-26 22:37:59] 2025-11-27 03:37:01,453 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:37:59] 2025-11-27 03:37:01,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:37:59] 2025-11-27 03:37:01,471 | INFO     | did not find any defunct processes belonging to 3829854
[2025-11-26 22:37:59] 2025-11-27 03:37:01,491 | INFO     | did not find any defunct processes belonging to 3829854
[2025-11-26 22:37:59] 2025-11-27 03:37:01,513 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:37:59] 2025-11-27 03:37:01,513 | INFO     | ready for new job
[2025-11-26 22:37:59] 2025-11-27 03:37:01,513 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:37:59] 2025-11-27 03:37:01,519 | INFO     | ***************************************
[2025-11-26 22:37:59] 2025-11-27 03:37:01,519 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:37:59] 2025-11-27 03:37:01,519 | INFO     | ***************************************
[2025-11-26 22:37:59] 2025-11-27 03:37:01,519 | INFO     | 
[2025-11-26 22:37:59] 2025-11-27 03:37:01,522 | INFO     | architecture information:
[2025-11-26 22:37:59] 2025-11-27 03:37:01,523 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:37:59] 2025-11-27 03:37:01,564 | INFO     | cat /etc/os-release:
[2025-11-26 22:37:59] NAME="CentOS Linux"
[2025-11-26 22:37:59] VERSION="7 (Core)"
[2025-11-26 22:37:59] ID="centos"
[2025-11-26 22:37:59] ID_LIKE="rhel fedora"
[2025-11-26 22:37:59] VERSION_ID="7"
[2025-11-26 22:37:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:37:59] ANSI_COLOR="0;31"
[2025-11-26 22:37:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:37:59] HOME_URL="https://www.centos.org/"
[2025-11-26 22:37:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:37:59] 
[2025-11-26 22:37:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:37:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:37:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:37:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:37:59] 
[2025-11-26 22:37:59] 2025-11-27 03:37:01,565 | INFO     | ***************************************
[2025-11-26 22:37:59] 2025-11-27 03:37:02,068 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 22:37:59] 2025-11-27 03:37:02,218 | INFO     | sufficient remaining disk space (71872544768 B)
[2025-11-26 22:37:59] 2025-11-27 03:37:02,219 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:37:59] 2025-11-27 03:37:02,219 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:37:59] 2025-11-27 03:37:02,219 | INFO     | update_server=False
[2025-11-26 22:37:59] 2025-11-27 03:37:02,219 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:37:59] 2025-11-27 03:37:02,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:37:59] 2025-11-27 03:37:02,219 | INFO     | aborting loop
[2025-11-26 22:37:59] 2025-11-27 03:37:02,453 | INFO     | all job control threads have been joined
[2025-11-26 22:37:59] 2025-11-27 03:37:02,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:37:59] 2025-11-27 03:37:03,147 | INFO     | all data control threads have been joined
[2025-11-26 22:37:59] 2025-11-27 03:37:03,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:37:59] 2025-11-27 03:37:03,232 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:03,239 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:03,250 | INFO     | [job] validate thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:03,459 | INFO     | [job] control thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:03,551 | INFO     | all payload control threads have been joined
[2025-11-26 22:37:59] 2025-11-27 03:37:03,698 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:03,813 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:03,967 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,046 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,072 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,155 | INFO     | [data] control thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,328 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,557 | INFO     | [payload] control thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,696 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:04,809 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:37:59] 2025-11-27 03:37:05,814 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:07,179 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:37:59] 2025-11-27 03:37:31,856 | INFO     | PID=3808876 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:37:59] 2025-11-27 03:37:31,857 | INFO     | .. there are 23 such processes running
[2025-11-26 22:37:59] 2025-11-27 03:37:31,857 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:37:59] 2025-11-27 03:37:31,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:37:59] 2025-11-27 03:37:31,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:37:59] 2025-11-27 03:37:53,450 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:37:59] 2025-11-27 03:37:54,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491584771904)>', '<ExcThread(monitor, started 140491223967488)>']
[2025-11-26 22:37:59] 2025-11-27 03:37:54,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:37:59] 2025-11-27 03:37:54,997 | INFO     | [monitor] control thread has ended
[2025-11-26 22:37:59] 2025-11-27 03:37:59,061 | INFO     | all workflow threads have been joined
[2025-11-26 22:37:59] 2025-11-27 03:37:59,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:37:59] 2025-11-27 03:37:59,062 | INFO     | traces error code: 0
[2025-11-26 22:37:59] 2025-11-27 03:37:59,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:37:59] 2025-11-27 03:37:59,238 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:37:59] 2025-11-27 03:37:59,241 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:37:59] 2025-11-27 03:37:59,245 [wrapper] pilotpid: 3808876
[2025-11-26 22:37:59] 2025-11-27 03:37:59,248 [wrapper] Pilot exit status: 0
[2025-11-26 22:37:59] 2025-11-27 03:37:59,284 [wrapper] pandaids: 6891104441
[2025-11-26 22:37:59] 2025-11-27 03:37:59,412 [wrapper] cleanup supervisor_pilot 3679328 3808877
[2025-11-26 22:37:59] 2025-11-27 03:37:59,417 [wrapper] Test setup, not cleaning
[2025-11-26 22:37:59] 2025-11-27 03:37:59,420 [wrapper] apfmon messages muted
[2025-11-26 22:37:59] 2025-11-27 03:37:59,423 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:37:59] 2025-11-27 03:37:59,426 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:37:59]  *** Error codes and diagnostics ***
[2025-11-26 22:37:59]     "exeErrorCode": 0,
[2025-11-26 22:37:59]     "exeErrorDiag": "",
[2025-11-26 22:37:59]     "pilotErrorCode": 0,
[2025-11-26 22:37:59]     "pilotErrorDiag": "",
[2025-11-26 22:37:59]  *** Listing of results directory ***
[2025-11-26 22:37:59] total 1329208
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-26 22:37:59] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:37:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:09 run_atlas
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:09 job.xml
[2025-11-26 22:37:59] -rw-r--r--. 2 boincer umatlas 410991740 Nov 26 00:09 EVNT.47483658._000225.pool.root.1
[2025-11-26 22:37:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:09 start_atlas.sh
[2025-11-26 22:37:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:09 shared
[2025-11-26 22:37:59] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:09 input.tar.gz
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:09 boinc_lockfile
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:09 pandaJob.out
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas    991877 Nov 26 00:10 agis_schedconf.cvmfs.json
[2025-11-26 22:37:59] drwx------. 5 boincer umatlas      4096 Nov 26 00:10 pilot3
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:21 boinc_task_state.xml
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas      6841 Nov 26 22:27 init_data.xml
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas 920840057 Nov 26 22:35 HITS.47483661._001943.pool.root.1
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas      1058 Nov 26 22:36 memory_monitor_summary.json
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:36 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas   2481358 Nov 26 22:36 log.47483661._001943.job.log.tgz.1
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas        95 Nov 26 22:36 pilot_heartbeat.json
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas      8631 Nov 26 22:36 heartbeat.json
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:37 wrapper_checkpoint.txt
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:37 boinc_mmap_file
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas      4824 Nov 26 22:37 pilotlog.txt
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas  10201006 Nov 26 22:37 log.47483661._001943.job.log.1
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas       353 Nov 26 22:37 output.list
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:37 runtime_log
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas  12697600 Nov 26 22:37 result.tar.gz
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas      8704 Nov 26 22:37 runtime_log.err
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas       660 Nov 26 22:37 pZuNDmRqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDms6qMDm0hE0Fm.diag
[2025-11-26 22:37:59] -rw-r--r--. 1 boincer umatlas     21142 Nov 26 22:37 stderr.txt
[2025-11-26 22:37:59] HITS file was successfully produced:
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas 920840057 Nov 26 22:35 shared/HITS.pool.root.1
[2025-11-26 22:37:59]  *** Contents of shared directory: ***
[2025-11-26 22:37:59] total 1313624
[2025-11-26 22:37:59] -rw-r--r--. 2 boincer umatlas 410991740 Nov 26 00:09 ATLAS.root_0
[2025-11-26 22:37:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:09 start_atlas.sh
[2025-11-26 22:37:59] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:09 input.tar.gz
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas 920840057 Nov 26 22:35 HITS.pool.root.1
[2025-11-26 22:37:59] -rw-------. 1 boincer umatlas  12697600 Nov 26 22:37 result.tar.gz
22:38:01 (3800421): run_atlas exited; CPU time 241927.153258
22:38:01 (3800421): called boinc_finish(0)

</stderr_txt>
]]>

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