Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:31 (1793020): wrapper (7.7.26015): starting
00:04:31 (1793020): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:31] Arguments: --nthreads 9
[2025-11-26 00:04:31] Threads: 9
[2025-11-26 00:04:31] Checking for CVMFS
[2025-11-26 00:04:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:32] 2.13.2.0 5195 36121 136716 153309 0 305 25241962 40960000 17860 16776704 0 70160019 99.771 37252399 37469 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:32] CVMFS is ok
[2025-11-26 00:04:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:32] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:32] Checking for apptainer binary...
[2025-11-26 00:04:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:32] Running /usr/bin/apptainer --version
[2025-11-26 00:04:32] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:33] c-212-19.aglt2.org
[2025-11-26 00:04:33] apptainer works
[2025-11-26 00:04:33] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:33] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:33] Starting ATLAS job with PandaID=6891104440
[2025-11-26 00:04:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:28:52 (89955): wrapper (7.7.26015): starting
13:28:52 (89955): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 13:28:52] Arguments: --nthreads 9
[2025-11-26 13:28:52] Threads: 9
[2025-11-26 13:28:52] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:28:52] Checking for CVMFS
[2025-11-26 13:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:28:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:28:53] 2.13.2.0 5195 36925 148484 153331 1 64 40041233 40960000 17102 16776704 0 72638678 99.774 37924542 37411 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:28:53] CVMFS is ok
[2025-11-26 13:28:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:28:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:28:53] Further information can be found at the LHC@home message board.
[2025-11-26 13:28:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:28:53] Checking for apptainer binary...
[2025-11-26 13:28:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:28:53] Running /usr/bin/apptainer --version
[2025-11-26 13:28:53] apptainer version 1.4.4-1.el9
[2025-11-26 13:28:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:28:53] c-212-19.aglt2.org
[2025-11-26 13:28:53] apptainer works
[2025-11-26 13:28:53] Set ATHENA_PROC_NUMBER=9
[2025-11-26 13:28:53] Set ATHENA_CORE_NUMBER=9
[2025-11-26 13:28:53] Starting ATLAS job with PandaID=6891104440
[2025-11-26 13:28:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:20:05 (89955): BOINC client no longer exists - exiting
18:20:05 (89955): timer handler: client dead, exiting
18:29:11 (912865): wrapper (7.7.26015): starting
18:29:11 (912865): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:29:11] Arguments: --nthreads 8
[2025-11-26 18:29:11] Threads: 8
[2025-11-26 18:29:11] This job has been restarted, cleaning up previous attempt
[2025-11-26 18:29:11] Checking for CVMFS
[2025-11-26 18:29:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:29:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:29:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:29:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:29:11] 2.13.2.0 5195 37225 172564 153340 2 594 24796857 40960001 14479 16776704 0 73742800 99.769 39286884 37331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:29:11] CVMFS is ok
[2025-11-26 18:29:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:29:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:29:11] Further information can be found at the LHC@home message board.
[2025-11-26 18:29:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:29:11] Checking for apptainer binary...
[2025-11-26 18:29:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:29:11] Running /usr/bin/apptainer --version
[2025-11-26 18:29:12] apptainer version 1.4.4-1.el9
[2025-11-26 18:29:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:29:12] c-212-19.aglt2.org
[2025-11-26 18:29:12] apptainer works
[2025-11-26 18:29:12] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:29:12] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:29:12] Starting ATLAS job with PandaID=6891104440
[2025-11-26 18:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:11:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:11:53] 2025-11-27 18:11:17,438 | INFO     | PID=934942 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:11:53] 2025-11-27 18:11:17,438 | INFO     | .. there are 19 such processes running
[2025-11-27 13:11:53] 2025-11-27 18:11:18,440 | INFO     | time since job start (67312s) is within the limit (172800.0s)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,543 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 13:11:53] 2025-11-27 18:11:18,606 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3070.435010416666
[2025-11-27 13:11:53] 2025-11-27 18:11:18,622 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891104440/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,623 | INFO     | extracted standard info from prmon json
[2025-11-27 13:11:53] 2025-11-27 18:11:18,623 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:11:53] 2025-11-27 18:11:18,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:11:53] 2025-11-27 18:11:18,637 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:11:53] 2025-11-27 18:11:18,638 | INFO     | sum of square deviations: 416096289899.6511
[2025-11-27 13:11:53] 2025-11-27 18:11:18,661 | INFO     | sum of deviations: 1963494318720.516
[2025-11-27 13:11:53] 2025-11-27 18:11:18,661 | INFO     | mean x: 1764233413.4904804
[2025-11-27 13:11:53] 2025-11-27 18:11:18,661 | INFO     | mean y: 2886634.6681776973
[2025-11-27 13:11:53] 2025-11-27 18:11:18,661 | INFO     | intersect: -8322259175.021402
[2025-11-27 13:11:53] 2025-11-27 18:11:18,662 | INFO     | chi2: 10.014844051502715
[2025-11-27 13:11:53] 2025-11-27 18:11:18,663 | INFO     | sum of square deviations: 410463989525.99493
[2025-11-27 13:11:53] 2025-11-27 18:11:18,686 | INFO     | sum of deviations: 2347965095278.732
[2025-11-27 13:11:53] 2025-11-27 18:11:18,687 | INFO     | mean x: 1764233261.0018215
[2025-11-27 13:11:53] 2025-11-27 18:11:18,687 | INFO     | mean y: 2897044.134790528
[2025-11-27 13:11:53] 2025-11-27 18:11:18,687 | INFO     | intersect: -10088994625.937551
[2025-11-27 13:11:53] 2025-11-27 18:11:18,688 | INFO     | chi2: 6.5737957786247545
[2025-11-27 13:11:53] 2025-11-27 18:11:18,688 | INFO     | current chi2=6.5737957786247545 (change=34.359479340685645 %)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,689 | INFO     | sum of square deviations: 404882559321.1291
[2025-11-27 13:11:53] 2025-11-27 18:11:18,712 | INFO     | sum of deviations: 2625701139371.1978
[2025-11-27 13:11:53] 2025-11-27 18:11:18,712 | INFO     | mean x: 1764233108.5105214
[2025-11-27 13:11:53] 2025-11-27 18:11:18,712 | INFO     | mean y: 2904626.2433668803
[2025-11-27 13:11:53] 2025-11-27 18:11:18,713 | INFO     | intersect: -11438311539.99401
[2025-11-27 13:11:53] 2025-11-27 18:11:18,714 | INFO     | chi2: 4.511758632796864
[2025-11-27 13:11:53] 2025-11-27 18:11:18,714 | INFO     | current chi2=4.511758632796864 (change=31.367526696414515 %)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,715 | INFO     | sum of square deviations: 399351767147.7018
[2025-11-27 13:11:53] 2025-11-27 18:11:18,737 | INFO     | sum of deviations: 2800265110637.1704
[2025-11-27 13:11:53] 2025-11-27 18:11:18,737 | INFO     | mean x: 1764232956.016544
[2025-11-27 13:11:53] 2025-11-27 18:11:18,737 | INFO     | mean y: 2909437.768382353
[2025-11-27 13:11:53] 2025-11-27 18:11:18,737 | INFO     | intersect: -12367938521.80059
[2025-11-27 13:11:53] 2025-11-27 18:11:18,738 | INFO     | chi2: 3.6590086145971017
[2025-11-27 13:11:53] 2025-11-27 18:11:18,738 | INFO     | current chi2=3.6590086145971017 (change=18.900612546091324 %)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,738 | INFO     | right removable region: 1087
[2025-11-27 13:11:53] 2025-11-27 18:11:18,739 | INFO     | sum of square deviations: 410462313855.99493
[2025-11-27 13:11:53] 2025-11-27 18:11:18,762 | INFO     | sum of deviations: 1655775366718.5823
[2025-11-27 13:11:53] 2025-11-27 18:11:18,763 | INFO     | mean x: 1764233566.0018215
[2025-11-27 13:11:53] 2025-11-27 18:11:18,763 | INFO     | mean y: 2894955.70856102
[2025-11-27 13:11:53] 2025-11-27 18:11:18,763 | INFO     | intersect: -7113895992.23886
[2025-11-27 13:11:53] 2025-11-27 18:11:18,764 | INFO     | chi2: 7.779262837981468
[2025-11-27 13:11:53] 2025-11-27 18:11:18,764 | INFO     | current chi2=7.779262837981468 (change=22.32267623963451 %)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,764 | INFO     | left removable region: 10
[2025-11-27 13:11:53] 2025-11-27 18:11:18,765 | INFO     | sum of square deviations: 387360549678.6461
[2025-11-27 13:11:53] 2025-11-27 18:11:18,788 | INFO     | sum of deviations: 2410361815762.8477
[2025-11-27 13:11:53] 2025-11-27 18:11:18,788 | INFO     | mean x: 1764233230.5236769
[2025-11-27 13:11:53] 2025-11-27 18:11:18,788 | INFO     | mean y: 2921784.6137418756
[2025-11-27 13:11:53] 2025-11-27 18:11:18,788 | INFO     | intersect: -10975068659.901125
[2025-11-27 13:11:53] 2025-11-27 18:11:18,789 | INFO     | chi2: 1.152905829136562
[2025-11-27 13:11:53] 2025-11-27 18:11:18,790 | INFO     | current memory leak: 6.22 B/s (using 1077 data points, chi2=1.15)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,791 | INFO     | could have reported an average CPU frequency of 3104 MHz (40 samples)
[2025-11-27 13:11:53] 2025-11-27 18:11:18,791 | INFO     | ..............................
[2025-11-27 13:11:53] 2025-11-27 18:11:18,791 | INFO     | . Timing measurements:
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . get job = 0 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . initial setup = 2 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . payload setup = 8 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . stage-in = 0 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . payload execution = 67264 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . stage-out = 5 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | . log creation = 1 s
[2025-11-27 13:11:53] 2025-11-27 18:11:18,792 | INFO     | ..............................
[2025-11-27 13:11:53] 2025-11-27 18:11:19,020 | INFO     | 
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | job summary report
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | --------------------------------------------------
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | PanDA job id: 6891104440
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | task id: 47483661
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | errors: (none)
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | pilot state: finished 
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | transexitcode: 0
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | exeerrorcode: 0
[2025-11-27 13:11:53] 2025-11-27 18:11:19,021 | INFO     | exeerrordiag: 
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | exitcode: 0
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | exitmsg: OK
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | cpuconsumptiontime: 202437 s
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | nevents: 1000
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | neventsw: 0
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | pid: 975792
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | pgrp: 975792
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | corecount: 8
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | event service: False
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | sizes: {0: 2284077, 1: 2284332, 7: 2284594, 12: 2284622, 67276: 2340826, 67282: 2350004, 67296: 2350194}
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | --------------------------------------------------
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | 
[2025-11-27 13:11:53] 2025-11-27 18:11:19,022 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 13:11:53] 2025-11-27 18:11:19,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,154 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:11:53] 2025-11-27 18:11:19,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,160 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:11:53] 2025-11-27 18:11:19,160 | INFO     | job 6891104440 has completed (purged errors)
[2025-11-27 13:11:53] 2025-11-27 18:11:19,160 | INFO     | overall cleanup function is called
[2025-11-27 13:11:53] 2025-11-27 18:11:20,227 | INFO     | --- collectZombieJob: --- 10, [975792]
[2025-11-27 13:11:53] 2025-11-27 18:11:20,227 | INFO     | zombie collector waiting for pid 975792
[2025-11-27 13:11:53] 2025-11-27 18:11:20,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:11:53] 2025-11-27 18:11:20,227 | INFO     | collected zombie processes
[2025-11-27 13:11:53] 2025-11-27 18:11:20,227 | INFO     | will attempt to kill all subprocesses of pid=975792
[2025-11-27 13:11:53] 2025-11-27 18:11:21,054 | INFO     | process IDs to be killed: [975792] (in reverse order)
[2025-11-27 13:11:53] 2025-11-27 18:11:21,277 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:11:53] 2025-11-27 18:11:21,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:11:53] 2025-11-27 18:11:21,293 | INFO     | did not find any defunct processes belonging to 975792
[2025-11-27 13:11:53] 2025-11-27 18:11:21,308 | INFO     | did not find any defunct processes belonging to 975792
[2025-11-27 13:11:53] 2025-11-27 18:11:21,309 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:11:53] 2025-11-27 18:11:21,309 | INFO     | ready for new job
[2025-11-27 13:11:53] 2025-11-27 18:11:21,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:11:53] 2025-11-27 18:11:21,334 | INFO     | ***************************************
[2025-11-27 13:11:53] 2025-11-27 18:11:21,334 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:11:53] 2025-11-27 18:11:21,334 | INFO     | ***************************************
[2025-11-27 13:11:53] 2025-11-27 18:11:21,334 | INFO     | 
[2025-11-27 13:11:53] 2025-11-27 18:11:21,359 | INFO     | architecture information:
[2025-11-27 13:11:53] 2025-11-27 18:11:21,377 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:11:53] 2025-11-27 18:11:21,756 | INFO     | cat /etc/os-release:
[2025-11-27 13:11:53] NAME="CentOS Linux"
[2025-11-27 13:11:53] VERSION="7 (Core)"
[2025-11-27 13:11:53] ID="centos"
[2025-11-27 13:11:53] ID_LIKE="rhel fedora"
[2025-11-27 13:11:53] VERSION_ID="7"
[2025-11-27 13:11:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:11:53] ANSI_COLOR="0;31"
[2025-11-27 13:11:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:11:53] HOME_URL="https://www.centos.org/"
[2025-11-27 13:11:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:11:53] 
[2025-11-27 13:11:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:11:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:11:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:11:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:11:53] 
[2025-11-27 13:11:53] 2025-11-27 18:11:21,756 | INFO     | ***************************************
[2025-11-27 13:11:53] 2025-11-27 18:11:22,260 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 13:11:53] 2025-11-27 18:11:22,406 | INFO     | sufficient remaining disk space (120591482880 B)
[2025-11-27 13:11:53] 2025-11-27 18:11:22,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:11:53] 2025-11-27 18:11:22,407 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:11:53] 2025-11-27 18:11:22,407 | INFO     | update_server=False
[2025-11-27 13:11:53] 2025-11-27 18:11:22,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:11:53] 2025-11-27 18:11:22,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:11:53] 2025-11-27 18:11:22,535 | INFO     | aborting loop
[2025-11-27 13:11:53] 2025-11-27 18:11:22,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:11:53] 2025-11-27 18:11:23,413 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:23,449 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:23,507 | INFO     | all data control threads have been joined
[2025-11-27 13:11:53] 2025-11-27 18:11:23,541 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:23,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:23,882 | INFO     | all payload control threads have been joined
[2025-11-27 13:11:53] 2025-11-27 18:11:24,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:11:53] 2025-11-27 18:11:24,069 | INFO     | all job control threads have been joined
[2025-11-27 13:11:53] 2025-11-27 18:11:24,073 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,526 | INFO     | [data] control thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:11:53] 2025-11-27 18:11:24,546 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,587 | INFO     | [job] validate thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,588 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,771 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,825 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,873 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:24,889 | INFO     | [payload] control thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:25,043 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:25,075 | INFO     | [job] control thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:25,702 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:11:53] 2025-11-27 18:11:28,548 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:11:53] 2025-11-27 18:11:30,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657099581248)>', '<ExcThread(monitor, started 140656613779200)>']
[2025-11-27 13:11:53] 2025-11-27 18:11:35,662 | INFO     | all workflow threads have been joined
[2025-11-27 13:11:53] 2025-11-27 18:11:35,662 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:11:53] 2025-11-27 18:11:35,662 | INFO     | traces error code: 0
[2025-11-27 13:11:53] 2025-11-27 18:11:35,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:11:53] 2025-11-27 18:11:52,090 | INFO     | PID=934942 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 13:11:53] 2025-11-27 18:11:52,090 | INFO     | .. there are 19 such processes running
[2025-11-27 13:11:53] 2025-11-27 18:11:52,091 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:11:53] 2025-11-27 18:11:52,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:11:53] 2025-11-27 18:11:52,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:11:53] 2025-11-27 18:11:52,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:11:53] 2025-11-27 18:11:52,091 | INFO     | [monitor] control thread has ended
[2025-11-27 13:11:53] 2025-11-27 18:11:52,285 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:11:53] 2025-11-27 18:11:52,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:11:53] 2025-11-27 18:11:52,325 [wrapper] pilotpid: 934942
[2025-11-27 13:11:53] 2025-11-27 18:11:52,330 [wrapper] Pilot exit status: 0
[2025-11-27 13:11:53] 2025-11-27 18:11:52,349 [wrapper] pandaids: 6891104440 6891104440 6891104440
[2025-11-27 13:11:53] 2025-11-27 18:11:52,501 [wrapper] cleanup supervisor_pilot 3535054 934943
[2025-11-27 13:11:53] 2025-11-27 18:11:52,512 [wrapper] Test setup, not cleaning
[2025-11-27 13:11:53] 2025-11-27 18:11:52,540 [wrapper] apfmon messages muted
[2025-11-27 13:11:53] 2025-11-27 18:11:52,553 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:11:53] 2025-11-27 18:11:52,557 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:11:53]  *** Error codes and diagnostics ***
[2025-11-27 13:11:53]     "exeErrorCode": 0,
[2025-11-27 13:11:53]     "exeErrorDiag": "",
[2025-11-27 13:11:53]     "pilotErrorCode": 0,
[2025-11-27 13:11:53]     "pilotErrorDiag": "",
[2025-11-27 13:11:53]  *** Listing of results directory ***
[2025-11-27 13:11:53] total 1723236
[2025-11-27 13:11:53] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-27 13:11:53] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:11:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 13:11:53] -rw-r--r--. 3 boincer umatlas 410991740 Nov 26 00:04 EVNT.47483658._000225.pool.root.1
[2025-11-27 13:11:53] -rw-r--r--. 3 boincer umatlas 410991740 Nov 26 00:04 ATLAS.root_0
[2025-11-27 13:11:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 13:11:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 13:11:53] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:04 input.tar.gz
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 18:29 pandaJob.out
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas    991538 Nov 26 18:29 agis_schedconf.cvmfs.json
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas       534 Nov 27 12:41 boinc_task_state.xml
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 13:09 init_data.xml
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas 916892651 Nov 27 13:09 HITS.47483661._001942.pool.root.1
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas      1075 Nov 27 13:10 memory_monitor_summary.json
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:11 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas   2228264 Nov 27 13:11 log.47483661._001942.job.log.tgz.1
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas        96 Nov 27 13:11 pilot_heartbeat.json
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas      8597 Nov 27 13:11 heartbeat.json
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas       822 Nov 27 13:11 pilotlog.txt
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:11 boinc_mmap_file
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas   8671138 Nov 27 13:11 log.47483661._001942.job.log.1
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas       353 Nov 27 13:11 output.list
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:11 runtime_log
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas  10915840 Nov 27 13:11 result.tar.gz
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas      8789 Nov 27 13:11 runtime_log.err
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas       914 Nov 27 13:11 OLsNDmRqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmr6qMDmIu0B7n.diag
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas     25812 Nov 27 13:11 stderr.txt
[2025-11-27 13:11:53] -rw-r--r--. 1 boincer umatlas        30 Nov 27 13:11 wrapper_checkpoint.txt
[2025-11-27 13:11:53] HITS file was successfully produced:
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas 916892651 Nov 27 13:09 shared/HITS.pool.root.1
[2025-11-27 13:11:53]  *** Contents of shared directory: ***
[2025-11-27 13:11:53] total 1308028
[2025-11-27 13:11:53] -rw-r--r--. 3 boincer umatlas 410991740 Nov 26 00:04 ATLAS.root_0
[2025-11-27 13:11:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 13:11:53] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:04 input.tar.gz
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas 916892651 Nov 27 13:09 HITS.pool.root.1
[2025-11-27 13:11:53] -rw-------. 1 boincer umatlas  10915840 Nov 27 13:11 result.tar.gz
13:11:55 (912865): run_atlas exited; CPU time 203255.206006
13:11:55 (912865): called boinc_finish(0)

</stderr_txt>
]]>

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