Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:38 (1793937): wrapper (7.7.26015): starting
00:04:38 (1793937): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:38] Arguments: --nthreads 9
[2025-11-26 00:04:38] Threads: 9
[2025-11-26 00:04:38] Checking for CVMFS
[2025-11-26 00:04:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:39] 2.13.2.0 5195 36121 136716 153309 0 306 25241978 40960000 17918 16776704 0 70162267 99.771 37252402 37469 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:39] CVMFS is ok
[2025-11-26 00:04:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:39] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:39] Checking for apptainer binary...
[2025-11-26 00:04:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:39] Running /usr/bin/apptainer --version
[2025-11-26 00:04:39] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:40] c-212-19.aglt2.org
[2025-11-26 00:04:40] apptainer works
[2025-11-26 00:04:40] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:40] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:40] Starting ATLAS job with PandaID=6891104430
[2025-11-26 00:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:20:03 (1793937): BOINC client no longer exists - exiting
13:20:03 (1793937): timer handler: client dead, exiting
13:28:52 (89956): wrapper (7.7.26015): starting
13:28:52 (89956): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 13:28:52] Arguments: --nthreads 9
[2025-11-26 13:28:52] Threads: 9
[2025-11-26 13:28:52] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:28:52] Checking for CVMFS
[2025-11-26 13:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:28:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:28:52] 2.13.2.0 5195 36925 148484 153331 1 64 40041233 40960000 17102 16776704 0 72638665 99.774 37924542 37411 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:28:52] CVMFS is ok
[2025-11-26 13:28:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:28:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:28:52] Further information can be found at the LHC@home message board.
[2025-11-26 13:28:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:28:52] Checking for apptainer binary...
[2025-11-26 13:28:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:28:52] Running /usr/bin/apptainer --version
[2025-11-26 13:28:53] apptainer version 1.4.4-1.el9
[2025-11-26 13:28:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:28:53] c-212-19.aglt2.org
[2025-11-26 13:28:53] apptainer works
[2025-11-26 13:28:53] Set ATHENA_PROC_NUMBER=9
[2025-11-26 13:28:53] Set ATHENA_CORE_NUMBER=9
[2025-11-26 13:28:53] Starting ATLAS job with PandaID=6891104430
[2025-11-26 13:28:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:20:12 (89956): BOINC client no longer exists - exiting
18:20:12 (89956): timer handler: client dead, exiting
18:29:11 (912866): wrapper (7.7.26015): starting
18:29:11 (912866): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:29:11] Arguments: --nthreads 8
[2025-11-26 18:29:11] Threads: 8
[2025-11-26 18:29:11] This job has been restarted, cleaning up previous attempt
[2025-11-26 18:29:11] Checking for CVMFS
[2025-11-26 18:29:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:29:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:29:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:29:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:29:11] 2.13.2.0 5195 37225 172564 153340 2 594 24796857 40960001 14479 16776704 0 73742800 99.769 39286884 37331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:29:11] CVMFS is ok
[2025-11-26 18:29:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:29:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:29:11] Further information can be found at the LHC@home message board.
[2025-11-26 18:29:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:29:11] Checking for apptainer binary...
[2025-11-26 18:29:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:29:11] Running /usr/bin/apptainer --version
[2025-11-26 18:29:12] apptainer version 1.4.4-1.el9
[2025-11-26 18:29:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:29:12] c-212-19.aglt2.org
[2025-11-26 18:29:12] apptainer works
[2025-11-26 18:29:12] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:29:12] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:29:12] Starting ATLAS job with PandaID=6891104430
[2025-11-26 18:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:40:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:40:20] 2025-11-27 16:05:12,853 | INFO     | log transfer has been attempted: DONE
[2025-11-27 11:40:20] 2025-11-27 16:05:12,853 | INFO     | job 6891104430 has finished - writing final server update
[2025-11-27 11:40:20] 2025-11-27 16:05:12,853 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 11:40:20] 2025-11-27 16:05:12,854 | INFO     | executing command: lscpu
[2025-11-27 11:40:20] 2025-11-27 16:05:12,947 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 11:40:20] 2025-11-27 16:05:13,575 | INFO     | time since job start (59747s) is within the limit (172800.0s)
[2025-11-27 11:40:20] 2025-11-27 16:05:15,084 | INFO     | monitor loop #3622: job 0:6891104430 is in state 'finished'
[2025-11-27 11:40:20] 2025-11-27 16:05:15,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:40:20] 2025-11-27 16:05:15,585 | INFO     | time since job start (59749s) is within the limit (172800.0s)
[2025-11-27 11:40:20] 2025-11-27 16:05:15,585 | INFO     | 59751s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 11:40:20] 2025-11-27 16:05:17,592 | INFO     | time since job start (59751s) is within the limit (172800.0s)
[2025-11-27 11:40:20] 2025-11-27 16:05:17,594 | INFO     | monitor loop #3623: job 0:6891104430 is in state 'finished'
[2025-11-27 11:40:20] 2025-11-27 16:05:17,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,599 | INFO     | time since job start (59753s) is within the limit (172800.0s)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,779 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 11:40:20] 2025-11-27 16:05:19,791 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3087.249645833334
[2025-11-27 11:40:20] 2025-11-27 16:05:19,805 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891104430/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,805 | INFO     | extracted standard info from prmon json
[2025-11-27 11:40:20] 2025-11-27 16:05:19,806 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:40:20] 2025-11-27 16:05:19,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:40:20] 2025-11-27 16:05:19,819 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:40:20] 2025-11-27 16:05:19,820 | INFO     | sum of square deviations: 290911758776.55
[2025-11-27 11:40:20] 2025-11-27 16:05:19,839 | INFO     | sum of deviations: 1949765775213.1155
[2025-11-27 11:40:20] 2025-11-27 16:05:19,840 | INFO     | mean x: 1764229633.2032685
[2025-11-27 11:40:20] 2025-11-27 16:05:19,840 | INFO     | mean y: 2861374.652706844
[2025-11-27 11:40:20] 2025-11-27 16:05:19,840 | INFO     | intersect: -11821461481.539114
[2025-11-27 11:40:20] 2025-11-27 16:05:19,841 | INFO     | chi2: 14.967778686190252
[2025-11-27 11:40:20] 2025-11-27 16:05:19,842 | INFO     | sum of square deviations: 286477795720.25745
[2025-11-27 11:40:20] 2025-11-27 16:05:19,862 | INFO     | sum of deviations: 2281169710600.072
[2025-11-27 11:40:20] 2025-11-27 16:05:19,862 | INFO     | mean x: 1764229480.724846
[2025-11-27 11:40:20] 2025-11-27 16:05:19,862 | INFO     | mean y: 2872771.1457905546
[2025-11-27 11:40:20] 2025-11-27 16:05:19,862 | INFO     | intersect: -14045360334.875105
[2025-11-27 11:40:20] 2025-11-27 16:05:19,863 | INFO     | chi2: 11.439785890912594
[2025-11-27 11:40:20] 2025-11-27 16:05:19,863 | INFO     | current chi2=11.439785890912594 (change=23.57058364667495 %)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,863 | INFO     | right removable region: 973
[2025-11-27 11:40:20] 2025-11-27 16:05:19,864 | INFO     | sum of square deviations: 286475404657.1541
[2025-11-27 11:40:20] 2025-11-27 16:05:19,882 | INFO     | sum of deviations: 1708193295172.7183
[2025-11-27 11:40:20] 2025-11-27 16:05:19,882 | INFO     | mean x: 1764229785.7227926
[2025-11-27 11:40:20] 2025-11-27 16:05:19,882 | INFO     | mean y: 2869666.3100616015
[2025-11-27 11:40:20] 2025-11-27 16:05:19,883 | INFO     | intersect: -10516865857.660395
[2025-11-27 11:40:20] 2025-11-27 16:05:19,883 | INFO     | chi2: 13.04539336944027
[2025-11-27 11:40:20] 2025-11-27 16:05:19,884 | INFO     | current chi2=13.04539336944027 (change=12.843491055380426 %)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,884 | INFO     | left removable region: 10
[2025-11-27 11:40:20] 2025-11-27 16:05:19,885 | INFO     | sum of square deviations: 276879086245.5891
[2025-11-27 11:40:20] 2025-11-27 16:05:19,899 | INFO     | sum of deviations: 2045010938817.078
[2025-11-27 11:40:20] 2025-11-27 16:05:19,899 | INFO     | mean x: 1764229755.2398753
[2025-11-27 11:40:20] 2025-11-27 16:05:19,899 | INFO     | mean y: 2886619.956386293
[2025-11-27 11:40:20] 2025-11-27 16:05:19,899 | INFO     | intersect: -13027599708.837605
[2025-11-27 11:40:20] 2025-11-27 16:05:19,899 | INFO     | chi2: 8.476911599958703
[2025-11-27 11:40:20] 2025-11-27 16:05:19,899 | INFO     | current memory leak: 7.39 B/s (using 963 data points, chi2=8.48)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | could have reported an average CPU frequency of 3112 MHz (36 samples)
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | ..............................
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . Timing measurements:
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . get job = 0 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . initial setup = 2 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . payload setup = 8 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . stage-in = 0 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . payload execution = 59710 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . stage-out = 3 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,900 | INFO     | . log creation = 0 s
[2025-11-27 11:40:20] 2025-11-27 16:05:19,901 | INFO     | ..............................
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | 
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | job summary report
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | --------------------------------------------------
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | PanDA job id: 6891104430
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | task id: 47483661
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | errors: (none)
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | pilot state: finished 
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | transexitcode: 0
[2025-11-27 11:40:20] 2025-11-27 16:05:20,081 | INFO     | exeerrorcode: 0
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | exeerrordiag: 
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | exitcode: 0
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | exitmsg: OK
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | cpuconsumptiontime: 209179 s
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | nevents: 1000
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | neventsw: 0
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | pid: 975645
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | pgrp: 975645
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | corecount: 8
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | event service: False
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | sizes: {0: 2284133, 1: 2284332, 6: 2284594, 12: 2284622, 59722: 2337158, 59727: 2346152, 59728: 2346336, 59737: 2346582}
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | --------------------------------------------------
[2025-11-27 11:40:20] 2025-11-27 16:05:20,082 | INFO     | 
[2025-11-27 11:40:20] 2025-11-27 16:05:20,083 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:40:20] 2025-11-27 16:05:20,107 | INFO     | job 6891104430 has completed (purged errors)
[2025-11-27 11:40:20] 2025-11-27 16:05:20,108 | INFO     | overall cleanup function is called
[2025-11-27 11:40:20] 2025-11-27 16:05:21,125 | INFO     | --- collectZombieJob: --- 10, [975645]
[2025-11-27 11:40:20] 2025-11-27 16:05:21,125 | INFO     | zombie collector waiting for pid 975645
[2025-11-27 11:40:20] 2025-11-27 16:05:21,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:40:20] 2025-11-27 16:05:21,125 | INFO     | collected zombie processes
[2025-11-27 11:40:20] 2025-11-27 16:05:21,125 | INFO     | will attempt to kill all subprocesses of pid=975645
[2025-11-27 11:40:20] 2025-11-27 16:05:21,524 | INFO     | process IDs to be killed: [975645] (in reverse order)
[2025-11-27 11:40:20] 2025-11-27 16:05:21,654 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:40:20] 2025-11-27 16:05:21,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:40:20] 2025-11-27 16:05:21,670 | INFO     | did not find any defunct processes belonging to 975645
[2025-11-27 11:40:20] 2025-11-27 16:05:21,686 | INFO     | did not find any defunct processes belonging to 975645
[2025-11-27 11:40:20] 2025-11-27 16:05:21,687 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:40:20] 2025-11-27 16:05:21,687 | INFO     | ready for new job
[2025-11-27 11:40:20] 2025-11-27 16:05:21,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:40:20] 2025-11-27 16:05:21,692 | INFO     | ***************************************
[2025-11-27 11:40:20] 2025-11-27 16:05:21,692 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:40:20] 2025-11-27 16:05:21,692 | INFO     | ***************************************
[2025-11-27 11:40:20] 2025-11-27 16:05:21,692 | INFO     | 
[2025-11-27 11:40:20] 2025-11-27 16:05:21,697 | INFO     | architecture information:
[2025-11-27 11:40:20] 2025-11-27 16:05:21,698 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:40:20] 2025-11-27 16:05:21,716 | INFO     | cat /etc/os-release:
[2025-11-27 11:40:20] NAME="CentOS Linux"
[2025-11-27 11:40:20] VERSION="7 (Core)"
[2025-11-27 11:40:20] ID="centos"
[2025-11-27 11:40:20] ID_LIKE="rhel fedora"
[2025-11-27 11:40:20] VERSION_ID="7"
[2025-11-27 11:40:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:40:20] ANSI_COLOR="0;31"
[2025-11-27 11:40:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:40:20] HOME_URL="https://www.centos.org/"
[2025-11-27 11:40:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:40:20] 
[2025-11-27 11:40:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:40:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:40:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:40:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:40:20] 
[2025-11-27 11:40:20] 2025-11-27 16:05:21,716 | INFO     | ***************************************
[2025-11-27 11:40:20] 2025-11-27 16:05:22,221 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 11:40:20] 2025-11-27 16:05:22,241 | INFO     | sufficient remaining disk space (119367794688 B)
[2025-11-27 11:40:20] 2025-11-27 16:05:22,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:40:20] 2025-11-27 16:05:22,241 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:40:20] 2025-11-27 16:05:22,242 | INFO     | update_server=False
[2025-11-27 11:40:20] 2025-11-27 16:05:22,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:40:20] 2025-11-27 16:05:22,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:40:20] 2025-11-27 16:05:22,278 | INFO     | all data control threads have been joined
[2025-11-27 11:40:20] 2025-11-27 16:05:22,604 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:40:20] 2025-11-27 16:05:22,604 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:40:20] 2025-11-27 16:05:22,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:40:20] 2025-11-27 16:05:22,604 | INFO     | will abort loop
[2025-11-27 11:40:20] 2025-11-27 16:05:22,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:40:20] 2025-11-27 16:05:22,904 | INFO     | all payload control threads have been joined
[2025-11-27 11:40:20] 2025-11-27 16:05:23,247 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:23,284 | INFO     | [data] control thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:23,285 | INFO     | all job control threads have been joined
[2025-11-27 11:40:20] 2025-11-27 16:05:23,414 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:23,583 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:23,610 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:23,917 | INFO     | [payload] control thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,134 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,290 | INFO     | [job] control thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,315 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,315 | INFO     | [job] validate thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,316 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,686 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,767 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:24,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:40:20] 2025-11-27 16:05:25,983 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:26,254 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:33,171 | INFO     | job.realtimelogging is not enabled
[2025-11-27 11:40:20] 2025-11-27 16:05:34,178 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:40:20] 2025-11-27 16:05:53,152 | INFO     | PID=934928 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 11:40:20] 2025-11-27 16:05:53,152 | INFO     | .. there are 20 such processes running
[2025-11-27 11:40:20] 2025-11-27 16:05:53,152 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:40:20] 2025-11-27 16:05:53,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:40:20] 2025-11-27 16:05:53,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:40:20] 2025-11-27 16:06:10,561 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:40:20] 2025-11-27 16:06:11,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361777350464)>', '<ExcThread(monitor, started 140361427031808)>']
[2025-11-27 11:40:20] 2025-11-27 16:06:12,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:40:20] 2025-11-27 16:06:12,276 | INFO     | [monitor] control thread has ended
[2025-11-27 11:40:20] 2025-11-27 16:06:16,457 | INFO     | all workflow threads have been joined
[2025-11-27 11:40:20] 2025-11-27 16:06:16,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:40:20] 2025-11-27 16:06:16,457 | INFO     | traces error code: 0
[2025-11-27 11:40:20] 2025-11-27 16:06:16,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:40:20] 2025-11-27 16:06:16,609 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:40:20] 2025-11-27 16:06:16,664 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:40:20] 2025-11-27 16:06:16,670 [wrapper] pilotpid: 934928
[2025-11-27 11:40:20] 2025-11-27 16:06:16,693 [wrapper] Pilot exit status: 0
[2025-11-27 11:40:20] 2025-11-27 16:06:16,705 [wrapper] pandaids: 6891104430 6891104430 6891104430
[2025-11-27 11:40:20] 2025-11-27 16:06:16,793 [wrapper] cleanup supervisor_pilot 3245891 934929
[2025-11-27 11:40:20] 2025-11-27 16:06:16,796 [wrapper] Test setup, not cleaning
[2025-11-27 11:40:20] 2025-11-27 16:06:16,806 [wrapper] apfmon messages muted
[2025-11-27 11:40:20] 2025-11-27 16:06:16,823 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:40:20] 2025-11-27 16:06:16,826 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:40:20]  *** Error codes and diagnostics ***
[2025-11-27 11:40:20]     "exeErrorCode": 0,
[2025-11-27 11:40:20]     "exeErrorDiag": "",
[2025-11-27 11:40:20]     "pilotErrorCode": 0,
[2025-11-27 11:40:20]     "pilotErrorDiag": "",
[2025-11-27 11:40:20]  *** Listing of results directory ***
[2025-11-27 11:40:20] total 1726692
[2025-11-27 11:40:20] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-27 11:40:20] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:40:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 11:40:20] -rw-r--r--. 3 boincer umatlas 409311484 Nov 26 00:04 EVNT.47483658._000224.pool.root.1
[2025-11-27 11:40:20] -rw-r--r--. 3 boincer umatlas 409311484 Nov 26 00:04 ATLAS.root_0
[2025-11-27 11:40:20] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 11:40:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 11:40:20] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 00:04 input.tar.gz
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 18:29 pandaJob.out
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas    991538 Nov 26 18:29 agis_schedconf.cvmfs.json
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas       534 Nov 27 10:36 boinc_task_state.xml
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas 926139797 Nov 27 11:03 HITS.47483661._001932.pool.root.1
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas      1061 Nov 27 11:05 memory_monitor_summary.json
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas   2129666 Nov 27 11:05 log.47483661._001932.job.log.tgz.1
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas        96 Nov 27 11:05 pilot_heartbeat.json
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas      8598 Nov 27 11:05 heartbeat.json
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas      5082 Nov 27 11:06 pilotlog.txt
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas   7592542 Nov 27 11:06 log.47483661._001932.job.log.1
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas       353 Nov 27 11:06 output.list
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:06 runtime_log
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas   9738240 Nov 27 11:06 result.tar.gz
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas      8789 Nov 27 11:06 runtime_log.err
[2025-11-27 11:40:20] -rw-------. 1 boincer umatlas       914 Nov 27 11:06 5GvKDmKqUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjNKODmrvUxFn.diag
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 11:40 init_data.xml
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:40 boinc_mmap_file
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas        30 Nov 27 11:40 wrapper_checkpoint.txt
[2025-11-27 11:40:20] -rw-r--r--. 1 boincer umatlas     26260 Nov 27 11:40 stderr.txt
[2025-11-27 11:40:21] HITS file was successfully produced:
[2025-11-27 11:40:21] -rw-------. 1 boincer umatlas 926139797 Nov 27 11:03 shared/HITS.pool.root.1
[2025-11-27 11:40:21]  *** Contents of shared directory: ***
[2025-11-27 11:40:21] total 1314272
[2025-11-27 11:40:21] -rw-r--r--. 3 boincer umatlas 409311484 Nov 26 00:04 ATLAS.root_0
[2025-11-27 11:40:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 11:40:21] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 00:04 input.tar.gz
[2025-11-27 11:40:21] -rw-------. 1 boincer umatlas 926139797 Nov 27 11:03 HITS.pool.root.1
[2025-11-27 11:40:21] -rw-------. 1 boincer umatlas   9738240 Nov 27 11:06 result.tar.gz
11:40:22 (912866): run_atlas exited; CPU time 209722.596020
11:40:22 (912866): called boinc_finish(0)

</stderr_txt>
]]>

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