Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:55 (4095332): wrapper (7.7.26015): starting
00:03:55 (4095332): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:03:55] Arguments: --nthreads 12
[2025-11-26 00:03:55] Threads: 12
[2025-11-26 00:03:55] Checking for CVMFS
[2025-11-26 00:03:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:56] 2.13.2.0 7528 32466 164672 153309 1 588 30327479 40960001 23697 16776704 0 69563487 99.771 41832962 42442 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:03:56] CVMFS is ok
[2025-11-26 00:03:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:56] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:56] Checking for apptainer binary...
[2025-11-26 00:03:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:56] Running /usr/bin/apptainer --version
[2025-11-26 00:03:56] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:57] c-212-9.aglt2.org
[2025-11-26 00:03:57] apptainer works
[2025-11-26 00:03:57] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:03:57] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:03:57] Starting ATLAS job with PandaID=6891104812
[2025-11-26 00:03:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:09:01]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:09:01] 2025-11-26 18:08:19,223 | INFO     | this job has now completed (state=finished)
[2025-11-26 13:09:01] 2025-11-26 18:08:19,223 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 13:09:01] 2025-11-26 18:08:19,224 | INFO     | log transfer has been attempted: DONE
[2025-11-26 13:09:01] 2025-11-26 18:08:19,224 | INFO     | job 6891104812 has finished - writing final server update
[2025-11-26 13:09:01] 2025-11-26 18:08:19,224 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 13:09:01] 2025-11-26 18:08:19,237 | INFO     | executing command: lscpu
[2025-11-26 13:09:01] 2025-11-26 18:08:19,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 13:09:01] 2025-11-26 18:08:19,399 | INFO     | time since job start (47038s) is within the limit (172800.0s)
[2025-11-26 13:09:01] 2025-11-26 18:08:21,406 | INFO     | time since job start (47040s) is within the limit (172800.0s)
[2025-11-26 13:09:01] 2025-11-26 18:08:21,737 | INFO     | monitor loop #2969: job 0:6891104812 is in state 'finished'
[2025-11-26 13:09:01] 2025-11-26 18:08:21,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:09:01] 2025-11-26 18:08:23,413 | INFO     | time since job start (47042s) is within the limit (172800.0s)
[2025-11-26 13:09:01] 2025-11-26 18:08:24,241 | INFO     | monitor loop #2970: job 0:6891104812 is in state 'finished'
[2025-11-26 13:09:01] 2025-11-26 18:08:24,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:09:01] 2025-11-26 18:08:25,420 | INFO     | time since job start (47044s) is within the limit (172800.0s)
[2025-11-26 13:09:01] 2025-11-26 18:08:25,704 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 13:09:01] 2025-11-26 18:08:25,733 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2953.7907499999988
[2025-11-26 13:09:01] 2025-11-26 18:08:25,764 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6891104812/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:09:01] 2025-11-26 18:08:25,765 | INFO     | extracted standard info from prmon json
[2025-11-26 13:09:01] 2025-11-26 18:08:25,765 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:09:01] 2025-11-26 18:08:25,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:09:01] 2025-11-26 18:08:25,778 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:09:01] 2025-11-26 18:08:25,780 | INFO     | sum of square deviations: 142076208344.8015
[2025-11-26 13:09:01] 2025-11-26 18:08:25,869 | INFO     | sum of deviations: -480680107622.1999
[2025-11-26 13:09:01] 2025-11-26 18:08:25,870 | INFO     | mean x: 1764156988.7276266
[2025-11-26 13:09:01] 2025-11-26 18:08:25,870 | INFO     | mean y: 3296208.0609597927
[2025-11-26 13:09:01] 2025-11-26 18:08:25,870 | INFO     | intersect: 5971889972.514974
[2025-11-26 13:09:01] 2025-11-26 18:08:25,870 | INFO     | chi2: 26.177154178760407
[2025-11-26 13:09:01] 2025-11-26 18:08:25,871 | INFO     | sum of square deviations: 139330084502.37216
[2025-11-26 13:09:01] 2025-11-26 18:08:25,937 | INFO     | sum of deviations: -155748232224.29688
[2025-11-26 13:09:01] 2025-11-26 18:08:25,965 | INFO     | mean x: 1764156836.2519581
[2025-11-26 13:09:01] 2025-11-26 18:08:25,966 | INFO     | mean y: 3314251.364229765
[2025-11-26 13:09:01] 2025-11-26 18:08:25,966 | INFO     | intersect: 1975352878.8723676
[2025-11-26 13:09:01] 2025-11-26 18:08:25,967 | INFO     | chi2: 21.910171420029993
[2025-11-26 13:09:01] 2025-11-26 18:08:25,967 | INFO     | current chi2=21.910171420029993 (change=16.300407330727165 %)
[2025-11-26 13:09:01] 2025-11-26 18:08:25,967 | INFO     | right removable region: 765
[2025-11-26 13:09:01] 2025-11-26 18:08:25,988 | INFO     | sum of square deviations: 139328612093.35104
[2025-11-26 13:09:01] 2025-11-26 18:08:26,000 | INFO     | sum of deviations: -739734038671.6714
[2025-11-26 13:09:01] 2025-11-26 18:08:26,000 | INFO     | mean x: 1764157141.2441254
[2025-11-26 13:09:01] 2025-11-26 18:08:26,000 | INFO     | mean y: 3310567.7950391644
[2025-11-26 13:09:01] 2025-11-26 18:08:26,000 | INFO     | intersect: 9369707514.81712
[2025-11-26 13:09:01] 2025-11-26 18:08:26,001 | INFO     | chi2: 23.773918690152087
[2025-11-26 13:09:01] 2025-11-26 18:08:26,001 | INFO     | current chi2=23.773918690152087 (change=9.180659869277369 %)
[2025-11-26 13:09:01] 2025-11-26 18:08:26,001 | INFO     | left removable region: 10
[2025-11-26 13:09:01] 2025-11-26 18:08:26,002 | INFO     | sum of square deviations: 133410795583.51576
[2025-11-26 13:09:01] 2025-11-26 18:08:26,013 | INFO     | sum of deviations: -425672698420.0463
[2025-11-26 13:09:01] 2025-11-26 18:08:26,013 | INFO     | mean x: 1764157110.789404
[2025-11-26 13:09:01] 2025-11-26 18:08:26,013 | INFO     | mean y: 3336807.119205298
[2025-11-26 13:09:01] 2025-11-26 18:08:26,013 | INFO     | intersect: 5632217996.99666
[2025-11-26 13:09:01] 2025-11-26 18:08:26,014 | INFO     | chi2: 18.49256262443975
[2025-11-26 13:09:01] 2025-11-26 18:08:26,014 | INFO     | current memory leak: -3.19 B/s (using 755 data points, chi2=18.49)
[2025-11-26 13:09:01] 2025-11-26 18:08:26,015 | INFO     | could have reported an average CPU frequency of 3075 MHz (29 samples)
[2025-11-26 13:09:01] 2025-11-26 18:08:26,015 | INFO     | ..............................
[2025-11-26 13:09:01] 2025-11-26 18:08:26,015 | INFO     | . Timing measurements:
[2025-11-26 13:09:01] 2025-11-26 18:08:26,015 | INFO     | . get job = 0 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | . initial setup = 2 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | . payload setup = 9 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | . stage-in = 0 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | . payload execution = 46992 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | . stage-out = 9 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | . log creation = 2 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,016 | INFO     | ..............................
[2025-11-26 13:09:01] 2025-11-26 18:08:26,104 | INFO     | 
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | job summary report
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | --------------------------------------------------
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | PanDA job id: 6891104812
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | task id: 47483661
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | errors: (none)
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | pilot state: finished 
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | transexitcode: 0
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | exeerrorcode: 0
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | exeerrordiag: 
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | exitcode: 0
[2025-11-26 13:09:01] 2025-11-26 18:08:26,106 | INFO     | exitmsg: OK
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | cpuconsumptiontime: 214603 s
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | nevents: 1000
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | neventsw: 0
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | pid: 4117589
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | pgrp: 4117589
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | corecount: 12
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | event service: False
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | sizes: {0: 2284304, 9: 2284566, 11: 2284594, 47006: 2331676, 47015: 2340670, 47016: 2340726, 47025: 2341100}
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | --------------------------------------------------
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | 
[2025-11-26 13:09:01] 2025-11-26 18:08:26,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 13:09:01] 2025-11-26 18:08:26,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:09:01] 2025-11-26 18:08:26,217 | INFO     | job 6891104812 has completed (purged errors)
[2025-11-26 13:09:01] 2025-11-26 18:08:26,217 | INFO     | overall cleanup function is called
[2025-11-26 13:09:01] 2025-11-26 18:08:27,285 | INFO     | --- collectZombieJob: --- 10, [4117589]
[2025-11-26 13:09:01] 2025-11-26 18:08:27,286 | INFO     | zombie collector waiting for pid 4117589
[2025-11-26 13:09:01] 2025-11-26 18:08:27,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:09:01] 2025-11-26 18:08:27,286 | INFO     | collected zombie processes
[2025-11-26 13:09:01] 2025-11-26 18:08:27,286 | INFO     | will attempt to kill all subprocesses of pid=4117589
[2025-11-26 13:09:01] 2025-11-26 18:08:28,396 | INFO     | process IDs to be killed: [4117589] (in reverse order)
[2025-11-26 13:09:01] 2025-11-26 18:08:28,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:09:01] 2025-11-26 18:08:28,534 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:09:01] 2025-11-26 18:08:28,551 | INFO     | did not find any defunct processes belonging to 4117589
[2025-11-26 13:09:01] 2025-11-26 18:08:28,568 | INFO     | did not find any defunct processes belonging to 4117589
[2025-11-26 13:09:01] 2025-11-26 18:08:28,573 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:09:01] 2025-11-26 18:08:28,574 | INFO     | ready for new job
[2025-11-26 13:09:01] 2025-11-26 18:08:28,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:09:01] 2025-11-26 18:08:28,580 | INFO     | ***************************************
[2025-11-26 13:09:01] 2025-11-26 18:08:28,581 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:09:01] 2025-11-26 18:08:28,581 | INFO     | ***************************************
[2025-11-26 13:09:01] 2025-11-26 18:08:28,581 | INFO     | 
[2025-11-26 13:09:01] 2025-11-26 18:08:28,590 | INFO     | architecture information:
[2025-11-26 13:09:01] 2025-11-26 18:08:28,593 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:09:01] 2025-11-26 18:08:28,640 | INFO     | cat /etc/os-release:
[2025-11-26 13:09:01] NAME="CentOS Linux"
[2025-11-26 13:09:01] VERSION="7 (Core)"
[2025-11-26 13:09:01] ID="centos"
[2025-11-26 13:09:01] ID_LIKE="rhel fedora"
[2025-11-26 13:09:01] VERSION_ID="7"
[2025-11-26 13:09:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:09:01] ANSI_COLOR="0;31"
[2025-11-26 13:09:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:09:01] HOME_URL="https://www.centos.org/"
[2025-11-26 13:09:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:09:01] 
[2025-11-26 13:09:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:09:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:09:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:09:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:09:01] 
[2025-11-26 13:09:01] 2025-11-26 18:08:28,641 | INFO     | ***************************************
[2025-11-26 13:09:01] 2025-11-26 18:08:29,144 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 13:09:01] 2025-11-26 18:08:29,164 | INFO     | sufficient remaining disk space (121933660160 B)
[2025-11-26 13:09:01] 2025-11-26 18:08:29,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:09:01] 2025-11-26 18:08:29,165 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:09:01] 2025-11-26 18:08:29,165 | INFO     | update_server=False
[2025-11-26 13:09:01] 2025-11-26 18:08:29,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:09:01] 2025-11-26 18:08:29,262 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 13:09:01] 2025-11-26 18:08:29,263 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 13:09:01] 2025-11-26 18:08:29,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:09:01] 2025-11-26 18:08:29,263 | INFO     | will abort loop
[2025-11-26 13:09:01] 2025-11-26 18:08:29,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:09:01] 2025-11-26 18:08:29,691 | INFO     | all payload control threads have been joined
[2025-11-26 13:09:01] 2025-11-26 18:08:29,793 | INFO     | all job control threads have been joined
[2025-11-26 13:09:01] 2025-11-26 18:08:30,170 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,195 | INFO     | all data control threads have been joined
[2025-11-26 13:09:01] 2025-11-26 18:08:30,264 | INFO     | [job] validate thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,297 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,310 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,445 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,697 | INFO     | [payload] control thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,771 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:30,798 | INFO     | [job] control thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:09:01] 2025-11-26 18:08:31,203 | INFO     | [data] control thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,327 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,331 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,351 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,561 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:31,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:09:01] 2025-11-26 18:08:32,165 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:35,862 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:09:01] 2025-11-26 18:08:42,992 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:09:01] 2025-11-26 18:08:43,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474316031808)>', '<ExcThread(monitor, started 140473532405504)>']
[2025-11-26 13:09:01] 2025-11-26 18:08:48,725 | INFO     | all workflow threads have been joined
[2025-11-26 13:09:01] 2025-11-26 18:08:48,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:09:01] 2025-11-26 18:08:48,726 | INFO     | traces error code: 0
[2025-11-26 13:09:01] 2025-11-26 18:08:48,726 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:09:01] 2025-11-26 18:08:59,064 | INFO     | PID=4101543 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:09:01] 2025-11-26 18:08:59,065 | INFO     | .. there are 19 such processes running
[2025-11-26 13:09:01] 2025-11-26 18:08:59,065 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:09:01] 2025-11-26 18:08:59,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:09:01] 2025-11-26 18:08:59,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:09:01] 2025-11-26 18:08:59,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:09:01] 2025-11-26 18:08:59,066 | INFO     | [monitor] control thread has ended
[2025-11-26 13:09:01] 2025-11-26 18:09:00,542 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:09:01] 2025-11-26 18:09:00,561 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:09:01] 2025-11-26 18:09:00,571 [wrapper] pilotpid: 4101543
[2025-11-26 13:09:01] 2025-11-26 18:09:00,589 [wrapper] Pilot exit status: 0
[2025-11-26 13:09:01] 2025-11-26 18:09:00,663 [wrapper] pandaids: 6891104812
[2025-11-26 13:09:01] 2025-11-26 18:09:00,799 [wrapper] cleanup supervisor_pilot 1650527 4101544
[2025-11-26 13:09:01] 2025-11-26 18:09:00,809 [wrapper] Test setup, not cleaning
[2025-11-26 13:09:01] 2025-11-26 18:09:00,812 [wrapper] apfmon messages muted
[2025-11-26 13:09:01] 2025-11-26 18:09:00,815 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:09:01] 2025-11-26 18:09:00,817 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:09:01]  *** Error codes and diagnostics ***
[2025-11-26 13:09:01]     "exeErrorCode": 0,
[2025-11-26 13:09:01]     "exeErrorDiag": "",
[2025-11-26 13:09:01]     "pilotErrorCode": 0,
[2025-11-26 13:09:01]     "pilotErrorDiag": "",
[2025-11-26 13:09:01]  *** Listing of results directory ***
[2025-11-26 13:09:01] total 1308696
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-26 13:09:01] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:09:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 13:09:01] -rw-r--r--. 2 boincer umatlas 406983913 Nov 26 00:03 EVNT.47483658._000230.pool.root.1
[2025-11-26 13:09:01] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-26 13:09:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 13:09:01] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:03 input.tar.gz
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:03 pandaJob.out
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 13:09:01] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:11 boinc_task_state.xml
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 13:03 init_data.xml
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas 912041141 Nov 26 13:07 HITS.47483661._001995.pool.root.1
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas      1051 Nov 26 13:08 memory_monitor_summary.json
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas   2418046 Nov 26 13:08 log.47483661._001995.job.log.tgz.1
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas      8579 Nov 26 13:08 heartbeat.json
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas        95 Nov 26 13:08 pilot_heartbeat.json
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas       823 Nov 26 13:08 pilotlog.txt
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:09 wrapper_checkpoint.txt
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:09 boinc_mmap_file
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas   6161744 Nov 26 13:09 log.47483661._001995.job.log.1
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas       353 Nov 26 13:09 output.list
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:09 runtime_log
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas   8601600 Nov 26 13:09 result.tar.gz
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas      8701 Nov 26 13:09 runtime_log.err
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas       660 Nov 26 13:09 ialKDmSqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmc7qMDmedmHLn.diag
[2025-11-26 13:09:01] -rw-r--r--. 1 boincer umatlas     21724 Nov 26 13:09 stderr.txt
[2025-11-26 13:09:01] HITS file was successfully produced:
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas 912041141 Nov 26 13:07 shared/HITS.pool.root.1
[2025-11-26 13:09:01]  *** Contents of shared directory: ***
[2025-11-26 13:09:01] total 1297120
[2025-11-26 13:09:01] -rw-r--r--. 2 boincer umatlas 406983913 Nov 26 00:03 ATLAS.root_0
[2025-11-26 13:09:01] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-26 13:09:01] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:03 input.tar.gz
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas 912041141 Nov 26 13:07 HITS.pool.root.1
[2025-11-26 13:09:01] -rw-------. 1 boincer umatlas   8601600 Nov 26 13:09 result.tar.gz
13:09:03 (4095332): run_atlas exited; CPU time 214434.655444
13:09:03 (4095332): called boinc_finish(0)

</stderr_txt>
]]>

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