Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:06 (4058418): wrapper (7.7.26015): starting
00:04:06 (4058418): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:06] Arguments: --nthreads 9
[2025-11-26 00:04:06] Threads: 9
[2025-11-26 00:04:06] Checking for CVMFS
[2025-11-26 00:04:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:08] 2.13.3.0 12359 29607 370732 153309 3 443 29220243 32935937 34317 16776704 0 181372551 99.619 176168699 32749 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:08] CVMFS is ok
[2025-11-26 00:04:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:08] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:08] Checking for apptainer binary...
[2025-11-26 00:04:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:08] Running /usr/bin/apptainer --version
[2025-11-26 00:04:08] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:09] c6-12-29-3.aglt2.org
[2025-11-26 00:04:09] apptainer works
[2025-11-26 00:04:09] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:09] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:09] Starting ATLAS job with PandaID=6896219317
[2025-11-26 00:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:10:15]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:10:15] 2025-11-27 21:08:47,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:10:15] 2025-11-27 21:08:47,981 | INFO     | time since job start (144204s) is within the limit (172800.0s)
[2025-11-27 16:10:15] 2025-11-27 21:08:50,009 | INFO     | time since job start (144207s) is within the limit (172800.0s)
[2025-11-27 16:10:15] 2025-11-27 21:08:50,172 | INFO     | monitor loop #6764: job 0:6896219317 is in state 'finished'
[2025-11-27 16:10:15] 2025-11-27 21:08:50,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:10:15] 2025-11-27 21:08:52,044 | INFO     | time since job start (144209s) is within the limit (172800.0s)
[2025-11-27 16:10:15] 2025-11-27 21:08:52,687 | INFO     | monitor loop #6765: job 0:6896219317 is in state 'finished'
[2025-11-27 16:10:15] 2025-11-27 21:08:52,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:10:15] 2025-11-27 21:08:54,052 | INFO     | time since job start (144211s) is within the limit (172800.0s)
[2025-11-27 16:10:15] 2025-11-27 21:08:55,198 | INFO     | monitor loop #6766: job 0:6896219317 is in state 'finished'
[2025-11-27 16:10:15] 2025-11-27 21:08:55,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:10:15] 2025-11-27 21:08:57,926 | INFO     | monitor loop #6767: job 0:6896219317 is in state 'finished'
[2025-11-27 16:10:15] 2025-11-27 21:08:57,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:10:15] 2025-11-27 21:08:57,936 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:10:15] 2025-11-27 21:08:57,997 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2621.8019062500002
[2025-11-27 16:10:15] 2025-11-27 21:08:58,110 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896219317/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:10:15] 2025-11-27 21:08:58,111 | INFO     | extracted standard info from prmon json
[2025-11-27 16:10:15] 2025-11-27 21:08:58,111 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:10:15] 2025-11-27 21:08:58,111 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:10:15] 2025-11-27 21:08:58,197 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:10:15] 2025-11-27 21:08:58,205 | INFO     | sum of square deviations: 4080889280655.2715
[2025-11-27 16:10:15] 2025-11-27 21:08:58,803 | INFO     | sum of deviations: 14914450636368.031
[2025-11-27 16:10:15] 2025-11-27 21:08:58,816 | INFO     | mean x: 1764205670.9466329
[2025-11-27 16:10:15] 2025-11-27 21:08:58,816 | INFO     | mean y: 3079785.3888182975
[2025-11-27 16:10:15] 2025-11-27 21:08:58,816 | INFO     | intersect: -6444573307.397158
[2025-11-27 16:10:15] 2025-11-27 21:08:58,828 | INFO     | chi2: 22.19101579936318
[2025-11-27 16:10:15] 2025-11-27 21:08:58,831 | INFO     | sum of square deviations: 4055018712741.771
[2025-11-27 16:10:15] 2025-11-27 21:09:00,116 | INFO     | sum of deviations: 15747308043023.105
[2025-11-27 16:10:15] 2025-11-27 21:09:00,116 | INFO     | mean x: 1764205518.4528863
[2025-11-27 16:10:15] 2025-11-27 21:09:00,116 | INFO     | mean y: 3084694.2219864177
[2025-11-27 16:10:15] 2025-11-27 21:09:00,116 | INFO     | intersect: -6848052062.06061
[2025-11-27 16:10:15] 2025-11-27 21:09:00,123 | INFO     | chi2: 19.036880601748116
[2025-11-27 16:10:15] 2025-11-27 21:09:00,124 | INFO     | current chi2=19.036880601748116 (change=14.213568347356038 %)
[2025-11-27 16:10:15] 2025-11-27 21:09:00,124 | INFO     | right removable region: 2355
[2025-11-27 16:10:15] 2025-11-27 21:09:00,131 | INFO     | sum of square deviations: 4055014468971.7734
[2025-11-27 16:10:15] 2025-11-27 21:09:00,539 | INFO     | monitor loop #6768: job 0:6896219317 is in state 'finished'
[2025-11-27 16:10:15] 2025-11-27 21:09:00,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:10:15] 2025-11-27 21:09:01,729 | INFO     | sum of deviations: 13890556895018.557
[2025-11-27 16:10:15] 2025-11-27 21:09:01,730 | INFO     | mean x: 1764205823.4528863
[2025-11-27 16:10:15] 2025-11-27 21:09:01,730 | INFO     | mean y: 3085819.9329371816
[2025-11-27 16:10:15] 2025-11-27 21:09:01,730 | INFO     | intersect: -6040246837.1289
[2025-11-27 16:10:15] 2025-11-27 21:09:01,752 | INFO     | chi2: 18.021928585314654
[2025-11-27 16:10:15] 2025-11-27 21:09:01,753 | INFO     | current chi2=18.021928585314654 (change=18.787275227698974 %)
[2025-11-27 16:10:15] 2025-11-27 21:09:01,753 | INFO     | left removable region: 10
[2025-11-27 16:10:15] 2025-11-27 21:09:01,814 | INFO     | sum of square deviations: 3998480382087.408
[2025-11-27 16:10:15] 2025-11-27 21:09:02,630 | INFO     | sum of deviations: 14075095223840.893
[2025-11-27 16:10:15] 2025-11-27 21:09:02,635 | INFO     | mean x: 1764205792.9667377
[2025-11-27 16:10:15] 2025-11-27 21:09:02,636 | INFO     | mean y: 3096490.371002132
[2025-11-27 16:10:15] 2025-11-27 21:09:02,636 | INFO     | intersect: -6207103925.191708
[2025-11-27 16:10:15] 2025-11-27 21:09:02,640 | INFO     | chi2: 11.793064612632106
[2025-11-27 16:10:15] 2025-11-27 21:09:02,640 | INFO     | current memory leak: 3.52 B/s (using 2345 data points, chi2=11.79)
[2025-11-27 16:10:15] 2025-11-27 21:09:02,643 | INFO     | could have reported an average CPU frequency of 2589 MHz (82 samples)
[2025-11-27 16:10:15] 2025-11-27 21:09:02,643 | INFO     | ..............................
[2025-11-27 16:10:15] 2025-11-27 21:09:02,643 | INFO     | . Timing measurements:
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . get job = 0 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . initial setup = 7 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . payload setup = 50 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . stage-in = 0 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . payload execution = 144016 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . stage-out = 14 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | . log creation = 4 s
[2025-11-27 16:10:15] 2025-11-27 21:09:02,644 | INFO     | ..............................
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | 
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | job summary report
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | --------------------------------------------------
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | PanDA job id: 6896219317
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | task id: 47556149
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | errors: (none)
[2025-11-27 16:10:15] 2025-11-27 21:09:03,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | pilot state: finished 
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | transexitcode: 0
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | exeerrorcode: 0
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | exeerrordiag: 
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | exitcode: 0
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | exitmsg: OK
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | cpuconsumptiontime: 287556 s
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | nevents: 1000
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | neventsw: 0
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | pid: 4123831
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | pgrp: 4123831
[2025-11-27 16:10:15] 2025-11-27 21:09:03,266 | INFO     | corecount: 9
[2025-11-27 16:10:15] 2025-11-27 21:09:03,267 | INFO     | event service: False
[2025-11-27 16:10:15] 2025-11-27 21:09:03,267 | INFO     | sizes: {0: 2284087, 1: 2284171, 2: 2284370, 3: 2284370, 15: 2284398, 26: 2284426, 37: 2284872, 48: 2284872, 144076: 2372965, 144078: 2372964, 144094: 2382014, 1440
[2025-11-27 16:10:15] 2025-11-27 21:09:03,267 | INFO     | --------------------------------------------------
[2025-11-27 16:10:15] 2025-11-27 21:09:03,267 | INFO     | 
[2025-11-27 16:10:15] 2025-11-27 21:09:03,267 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 16:10:15] 2025-11-27 21:09:03,341 | INFO     | PID=4077165 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:10:15] 2025-11-27 21:09:03,341 | INFO     | .. there are 61 such processes running
[2025-11-27 16:10:15] 2025-11-27 21:09:03,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:10:15] 2025-11-27 21:09:03,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:10:15] 2025-11-27 21:09:03,416 | INFO     | job 6896219317 has completed (purged errors)
[2025-11-27 16:10:15] 2025-11-27 21:09:03,416 | INFO     | overall cleanup function is called
[2025-11-27 16:10:15] 2025-11-27 21:09:04,454 | INFO     | --- collectZombieJob: --- 10, [4123831]
[2025-11-27 16:10:15] 2025-11-27 21:09:04,454 | INFO     | zombie collector waiting for pid 4123831
[2025-11-27 16:10:15] 2025-11-27 21:09:04,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:10:15] 2025-11-27 21:09:04,454 | INFO     | collected zombie processes
[2025-11-27 16:10:15] 2025-11-27 21:09:04,454 | INFO     | will attempt to kill all subprocesses of pid=4123831
[2025-11-27 16:10:15] 2025-11-27 21:09:08,220 | INFO     | process IDs to be killed: [4123831] (in reverse order)
[2025-11-27 16:10:15] 2025-11-27 21:09:09,200 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:10:15] 2025-11-27 21:09:09,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:10:15] 2025-11-27 21:09:09,835 | INFO     | did not find any defunct processes belonging to 4123831
[2025-11-27 16:10:15] 2025-11-27 21:09:10,240 | INFO     | did not find any defunct processes belonging to 4123831
[2025-11-27 16:10:15] 2025-11-27 21:09:10,328 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:10:15] 2025-11-27 21:09:10,329 | INFO     | ready for new job
[2025-11-27 16:10:15] 2025-11-27 21:09:10,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:10:15] 2025-11-27 21:09:10,407 | INFO     | ***************************************
[2025-11-27 16:10:15] 2025-11-27 21:09:10,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:10:15] 2025-11-27 21:09:10,407 | INFO     | ***************************************
[2025-11-27 16:10:15] 2025-11-27 21:09:10,408 | INFO     | 
[2025-11-27 16:10:15] 2025-11-27 21:09:10,447 | INFO     | architecture information:
[2025-11-27 16:10:15] 2025-11-27 21:09:10,477 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:10:15] 2025-11-27 21:09:10,566 | INFO     | cat /etc/os-release:
[2025-11-27 16:10:15] NAME="CentOS Linux"
[2025-11-27 16:10:15] VERSION="7 (Core)"
[2025-11-27 16:10:15] ID="centos"
[2025-11-27 16:10:15] ID_LIKE="rhel fedora"
[2025-11-27 16:10:15] VERSION_ID="7"
[2025-11-27 16:10:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:10:15] ANSI_COLOR="0;31"
[2025-11-27 16:10:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:10:15] HOME_URL="https://www.centos.org/"
[2025-11-27 16:10:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:10:15] 
[2025-11-27 16:10:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:10:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:10:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:10:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:10:15] 
[2025-11-27 16:10:15] 2025-11-27 21:09:10,566 | INFO     | ***************************************
[2025-11-27 16:10:15] 2025-11-27 21:09:11,070 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 16:10:15] 2025-11-27 21:09:11,155 | INFO     | sufficient remaining disk space (84256227328 B)
[2025-11-27 16:10:15] 2025-11-27 21:09:11,156 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:10:15] 2025-11-27 21:09:11,156 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:10:15] 2025-11-27 21:09:11,156 | INFO     | update_server=False
[2025-11-27 16:10:15] 2025-11-27 21:09:11,156 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:10:15] 2025-11-27 21:09:11,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:10:15] 2025-11-27 21:09:11,527 | INFO     | all data control threads have been joined
[2025-11-27 16:10:15] 2025-11-27 21:09:11,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:10:15] 2025-11-27 21:09:11,730 | INFO     | aborting loop
[2025-11-27 16:10:15] 2025-11-27 21:09:11,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:10:15] 2025-11-27 21:09:12,140 | INFO     | all payload control threads have been joined
[2025-11-27 16:10:15] 2025-11-27 21:09:12,162 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,365 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,404 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,411 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,532 | INFO     | [data] control thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:10:15] 2025-11-27 21:09:12,671 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,750 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,828 | INFO     | all job control threads have been joined
[2025-11-27 16:10:15] 2025-11-27 21:09:12,835 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:12,912 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:13,146 | INFO     | [payload] control thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:13,593 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:13,604 | INFO     | [job] validate thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:13,834 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:13,906 | INFO     | [job] control thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:15,264 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:10:15] 2025-11-27 21:09:38,762 | INFO     | PID=4077165 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:10:15] 2025-11-27 21:09:38,762 | INFO     | .. there are 61 such processes running
[2025-11-27 16:10:15] 2025-11-27 21:09:38,763 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:10:15] 2025-11-27 21:09:38,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:10:15] 2025-11-27 21:09:38,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:10:15] 2025-11-27 21:10:06,186 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:10:15] 2025-11-27 21:10:06,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162925737792)>', '<ExcThread(monitor, started 140162298279680)>']
[2025-11-27 16:10:15] 2025-11-27 21:10:07,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:10:15] 2025-11-27 21:10:07,045 | INFO     | [monitor] control thread has ended
[2025-11-27 16:10:15] 2025-11-27 21:10:11,356 | INFO     | all workflow threads have been joined
[2025-11-27 16:10:15] 2025-11-27 21:10:11,356 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:10:15] 2025-11-27 21:10:11,356 | INFO     | traces error code: 0
[2025-11-27 16:10:15] 2025-11-27 21:10:11,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:10:15] 2025-11-27 21:10:13,162 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:10:15] 2025-11-27 21:10:13,188 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:10:15] 2025-11-27 21:10:13,237 [wrapper] pilotpid: 4077165
[2025-11-27 16:10:15] 2025-11-27 21:10:13,285 [wrapper] Pilot exit status: 0
[2025-11-27 16:10:15] 2025-11-27 21:10:13,503 [wrapper] pandaids: 6896219317
[2025-11-27 16:10:15] 2025-11-27 21:10:14,128 [wrapper] cleanup supervisor_pilot 3005197 4077166
[2025-11-27 16:10:15] 2025-11-27 21:10:14,184 [wrapper] Test setup, not cleaning
[2025-11-27 16:10:15] 2025-11-27 21:10:14,239 [wrapper] apfmon messages muted
[2025-11-27 16:10:15] 2025-11-27 21:10:14,264 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:10:15] 2025-11-27 21:10:14,305 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:10:15]  *** Error codes and diagnostics ***
[2025-11-27 16:10:15]     "exeErrorCode": 0,
[2025-11-27 16:10:15]     "exeErrorDiag": "",
[2025-11-27 16:10:15]     "pilotErrorCode": 0,
[2025-11-27 16:10:15]     "pilotErrorDiag": "",
[2025-11-27 16:10:15]  *** Listing of results directory ***
[2025-11-27 16:10:15] total 1334716
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:57 queuedata.json
[2025-11-27 16:10:15] -rwx------. 1 boincer umatlas     36292 Nov 24 14:58 runpilot2-wrapper.sh
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:10:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 16:10:15] -rw-r--r--. 2 boincer umatlas 409963520 Nov 26 00:04 EVNT.47483658._001414.pool.root.1
[2025-11-27 16:10:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 16:10:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 16:10:15] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:04 input.tar.gz
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:04 pandaJob.out
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 16:10:15] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:17 boinc_task_state.xml
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 16:01 init_data.xml
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas 915348403 Nov 27 16:06 HITS.47556149._004004.pool.root.1
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas      1060 Nov 27 16:07 memory_monitor_summary.json
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas   3083120 Nov 27 16:08 log.47556149._004004.job.log.tgz.1
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas      8629 Nov 27 16:09 heartbeat.json
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas        95 Nov 27 16:09 pilot_heartbeat.json
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:10 wrapper_checkpoint.txt
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas      4824 Nov 27 16:10 pilotlog.txt
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas  15675348 Nov 27 16:10 log.47556149._004004.job.log.1
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas       353 Nov 27 16:10 output.list
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:10 runtime_log
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas  18780160 Nov 27 16:10 result.tar.gz
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas       666 Nov 27 16:10 xHlMDm3srh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0tLKDmMWypYn.diag
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 16:10 runtime_log.err
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:10 boinc_mmap_file
[2025-11-27 16:10:15] -rw-r--r--. 1 boincer umatlas     21928 Nov 27 16:10 stderr.txt
[2025-11-27 16:10:15] HITS file was successfully produced:
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas 915348403 Nov 27 16:06 shared/HITS.pool.root.1
[2025-11-27 16:10:15]  *** Contents of shared directory: ***
[2025-11-27 16:10:15] total 1313196
[2025-11-27 16:10:15] -rw-r--r--. 2 boincer umatlas 409963520 Nov 26 00:04 ATLAS.root_0
[2025-11-27 16:10:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 16:10:15] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:04 input.tar.gz
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas 915348403 Nov 27 16:06 HITS.pool.root.1
[2025-11-27 16:10:15] -rw-------. 1 boincer umatlas  18780160 Nov 27 16:10 result.tar.gz
16:10:17 (4058418): run_atlas exited; CPU time 293582.942917
16:10:17 (4058418): called boinc_finish(0)

</stderr_txt>
]]>

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