Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:10 (4049229): wrapper (7.7.26015): starting
00:03:10 (4049229): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:10] Arguments: --nthreads 9
[2025-11-26 00:03:10] Threads: 9
[2025-11-26 00:03:10] Checking for CVMFS
[2025-11-26 00:03:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:12] 2.13.3.0 12359 29607 370732 153309 0 443 29204969 32935937 34175 16776704 0 181347117 99.619 176168698 32749 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:12] CVMFS is ok
[2025-11-26 00:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:12] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:12] Checking for apptainer binary...
[2025-11-26 00:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:12] Running /usr/bin/apptainer --version
[2025-11-26 00:03:12] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:13] c6-12-29-3.aglt2.org
[2025-11-26 00:03:13] apptainer works
[2025-11-26 00:03:13] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:13] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:13] Starting ATLAS job with PandaID=6896203228
[2025-11-26 00:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:33:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:33:09] 2025-11-27 04:32:34,876 | INFO     | time since job start (84490s) is within the limit (172800.0s)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,436 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:33:09] 2025-11-27 04:32:35,463 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2549.583229166667
[2025-11-26 23:33:09] 2025-11-27 04:32:35,481 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896203228/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,482 | INFO     | extracted standard info from prmon json
[2025-11-26 23:33:09] 2025-11-27 04:32:35,482 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:33:09] 2025-11-27 04:32:35,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:33:09] 2025-11-27 04:32:35,507 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:33:09] 2025-11-27 04:32:35,509 | INFO     | sum of square deviations: 820206713814.2659
[2025-11-26 23:33:09] 2025-11-27 04:32:35,518 | INFO     | monitor loop #4400: job 0:6896203228 is in state 'finished'
[2025-11-26 23:33:09] 2025-11-27 04:32:35,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,550 | INFO     | sum of deviations: 4351608959771.016
[2025-11-26 23:33:09] 2025-11-27 04:32:35,551 | INFO     | mean x: 1764175778.7208965
[2025-11-26 23:33:09] 2025-11-27 04:32:35,551 | INFO     | mean y: 3026206.279826464
[2025-11-26 23:33:09] 2025-11-27 04:32:35,551 | INFO     | intersect: -9356813204.924145
[2025-11-26 23:33:09] 2025-11-27 04:32:35,553 | INFO     | chi2: 15.85698057043652
[2025-11-26 23:33:09] 2025-11-27 04:32:35,555 | INFO     | sum of square deviations: 811345280035.0938
[2025-11-26 23:33:09] 2025-11-27 04:32:35,597 | INFO     | sum of deviations: 4867580093249.082
[2025-11-26 23:33:09] 2025-11-27 04:32:35,597 | INFO     | mean x: 1764175626.2452831
[2025-11-26 23:33:09] 2025-11-27 04:32:35,598 | INFO     | mean y: 3035082.5885341074
[2025-11-26 23:33:09] 2025-11-27 04:32:35,598 | INFO     | intersect: -10580949776.40435
[2025-11-26 23:33:09] 2025-11-27 04:32:35,600 | INFO     | chi2: 12.376093429892453
[2025-11-26 23:33:09] 2025-11-27 04:32:35,600 | INFO     | current chi2=12.376093429892453 (change=21.95176518683369 %)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,600 | INFO     | right removable region: 1377
[2025-11-26 23:33:09] 2025-11-27 04:32:35,602 | INFO     | sum of square deviations: 811339610085.0927
[2025-11-26 23:33:09] 2025-11-27 04:32:35,641 | INFO     | sum of deviations: 3765973988177.993
[2025-11-26 23:33:09] 2025-11-27 04:32:35,642 | INFO     | mean x: 1764175931.2452831
[2025-11-26 23:33:09] 2025-11-27 04:32:35,642 | INFO     | mean y: 3036278.1923076925
[2025-11-26 23:33:09] 2025-11-27 04:32:35,642 | INFO     | intersect: -8185693305.64081
[2025-11-26 23:33:09] 2025-11-27 04:32:35,644 | INFO     | chi2: 11.618338323680932
[2025-11-26 23:33:09] 2025-11-27 04:32:35,644 | INFO     | current chi2=11.618338323680932 (change=26.730449898248843 %)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,646 | INFO     | sum of square deviations: 802536600579.2709
[2025-11-26 23:33:09] 2025-11-27 04:32:35,686 | INFO     | sum of deviations: 3258635155941.4185
[2025-11-26 23:33:09] 2025-11-27 04:32:35,686 | INFO     | mean x: 1764176083.7698472
[2025-11-26 23:33:09] 2025-11-27 04:32:35,686 | INFO     | mean y: 3045066.2228696286
[2025-11-26 23:33:09] 2025-11-27 04:32:35,686 | INFO     | intersect: -7160249671.60465
[2025-11-26 23:33:09] 2025-11-27 04:32:35,688 | INFO     | chi2: 8.524856043844872
[2025-11-26 23:33:09] 2025-11-27 04:32:35,689 | INFO     | current chi2=8.524856043844872 (change=26.625858136105474 %)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,690 | INFO     | sum of square deviations: 793798455281.246
[2025-11-26 23:33:09] 2025-11-27 04:32:35,729 | INFO     | sum of deviations: 2977625077412.4907
[2025-11-26 23:33:09] 2025-11-27 04:32:35,730 | INFO     | mean x: 1764176236.2858188
[2025-11-26 23:33:09] 2025-11-27 04:32:35,730 | INFO     | mean y: 3049967.5614035088
[2025-11-26 23:33:09] 2025-11-27 04:32:35,730 | INFO     | intersect: -6614568607.015766
[2025-11-26 23:33:09] 2025-11-27 04:32:35,732 | INFO     | chi2: 7.582674180653176
[2025-11-26 23:33:09] 2025-11-27 04:32:35,732 | INFO     | current chi2=7.582674180653176 (change=11.052173295899488 %)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,732 | INFO     | left removable region: 30
[2025-11-26 23:33:09] 2025-11-27 04:32:35,734 | INFO     | sum of square deviations: 757799535231.4227
[2025-11-26 23:33:09] 2025-11-27 04:32:35,772 | INFO     | sum of deviations: 3218718886139.707
[2025-11-26 23:33:09] 2025-11-27 04:32:35,773 | INFO     | mean x: 1764176510.832962
[2025-11-26 23:33:09] 2025-11-27 04:32:35,773 | INFO     | mean y: 3067686.745360059
[2025-11-26 23:33:09] 2025-11-27 04:32:35,773 | INFO     | intersect: -7490191400.788912
[2025-11-26 23:33:09] 2025-11-27 04:32:35,775 | INFO     | chi2: 2.989872835721764
[2025-11-26 23:33:09] 2025-11-27 04:32:35,775 | INFO     | current memory leak: 4.25 B/s (using 1347 data points, chi2=2.99)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | could have reported an average CPU frequency of 2585 MHz (49 samples)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | ..............................
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . Timing measurements:
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . get job = 0 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . initial setup = 6 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . payload setup = 50 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . stage-in = 0 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . payload execution = 84344 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,777 | INFO     | . stage-out = 5 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,778 | INFO     | . log creation = 1 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,778 | INFO     | ..............................
[2025-11-26 23:33:09] 2025-11-27 04:32:35,884 | INFO     | 
[2025-11-26 23:33:09] 2025-11-27 04:32:35,884 | INFO     | job summary report
[2025-11-26 23:33:09] 2025-11-27 04:32:35,884 | INFO     | --------------------------------------------------
[2025-11-26 23:33:09] 2025-11-27 04:32:35,884 | INFO     | PanDA job id: 6896203228
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | task id: 47556173
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | errors: (none)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | pilot state: finished 
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | transexitcode: 0
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | exeerrorcode: 0
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | exeerrordiag: 
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | exitcode: 0
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | exitmsg: OK
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | cpuconsumptiontime: 276648 s
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | nevents: 1000
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | neventsw: 0
[2025-11-26 23:33:09] 2025-11-27 04:32:35,885 | INFO     | pid: 4097564
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | pgrp: 4097564
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | corecount: 9
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | event service: False
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | sizes: {0: 2283485, 1: 2284170, 2: 2284198, 3: 2284369, 14: 2284397, 26: 2284425, 36: 2284871, 84399: 2347782, 84405: 2356776, 84407: 2356832, 84420: 2357078}
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | --------------------------------------------------
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | 
[2025-11-26 23:33:09] 2025-11-27 04:32:35,886 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 23:33:09] 2025-11-27 04:32:35,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,958 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,959 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | job 6896203228 has completed (purged errors)
[2025-11-26 23:33:09] 2025-11-27 04:32:35,960 | INFO     | overall cleanup function is called
[2025-11-26 23:33:09] 2025-11-27 04:32:36,980 | INFO     | --- collectZombieJob: --- 10, [4097564]
[2025-11-26 23:33:09] 2025-11-27 04:32:36,980 | INFO     | zombie collector waiting for pid 4097564
[2025-11-26 23:33:09] 2025-11-27 04:32:36,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:33:09] 2025-11-27 04:32:36,980 | INFO     | collected zombie processes
[2025-11-26 23:33:09] 2025-11-27 04:32:36,981 | INFO     | will attempt to kill all subprocesses of pid=4097564
[2025-11-26 23:33:09] 2025-11-27 04:32:38,468 | INFO     | process IDs to be killed: [4097564] (in reverse order)
[2025-11-26 23:33:09] 2025-11-27 04:32:38,681 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:33:09] 2025-11-27 04:32:38,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:33:09] 2025-11-27 04:32:38,727 | INFO     | did not find any defunct processes belonging to 4097564
[2025-11-26 23:33:09] 2025-11-27 04:32:38,802 | INFO     | did not find any defunct processes belonging to 4097564
[2025-11-26 23:33:09] 2025-11-27 04:32:38,804 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:33:09] 2025-11-27 04:32:38,804 | INFO     | ready for new job
[2025-11-26 23:33:09] 2025-11-27 04:32:38,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:33:09] 2025-11-27 04:32:38,812 | INFO     | ***************************************
[2025-11-26 23:33:09] 2025-11-27 04:32:38,813 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:33:09] 2025-11-27 04:32:38,813 | INFO     | ***************************************
[2025-11-26 23:33:09] 2025-11-27 04:32:38,813 | INFO     | 
[2025-11-26 23:33:09] 2025-11-27 04:32:38,819 | INFO     | architecture information:
[2025-11-26 23:33:09] 2025-11-27 04:32:38,820 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:33:09] 2025-11-27 04:32:38,837 | INFO     | cat /etc/os-release:
[2025-11-26 23:33:09] NAME="CentOS Linux"
[2025-11-26 23:33:09] VERSION="7 (Core)"
[2025-11-26 23:33:09] ID="centos"
[2025-11-26 23:33:09] ID_LIKE="rhel fedora"
[2025-11-26 23:33:09] VERSION_ID="7"
[2025-11-26 23:33:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:33:09] ANSI_COLOR="0;31"
[2025-11-26 23:33:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:33:09] HOME_URL="https://www.centos.org/"
[2025-11-26 23:33:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:33:09] 
[2025-11-26 23:33:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:33:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:33:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:33:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:33:09] 
[2025-11-26 23:33:09] 2025-11-27 04:32:38,837 | INFO     | ***************************************
[2025-11-26 23:33:09] 2025-11-27 04:32:39,340 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 23:33:09] 2025-11-27 04:32:39,361 | INFO     | sufficient remaining disk space (84275101696 B)
[2025-11-26 23:33:09] 2025-11-27 04:32:39,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:33:09] 2025-11-27 04:32:39,361 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:33:09] 2025-11-27 04:32:39,361 | INFO     | update_server=False
[2025-11-26 23:33:09] 2025-11-27 04:32:39,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:33:09] 2025-11-27 04:32:39,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:33:09] 2025-11-27 04:32:39,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:33:09] 2025-11-27 04:32:39,362 | INFO     | aborting loop
[2025-11-26 23:33:09] 2025-11-27 04:32:40,119 | INFO     | all data control threads have been joined
[2025-11-26 23:33:09] 2025-11-27 04:32:40,321 | INFO     | all job control threads have been joined
[2025-11-26 23:33:09] 2025-11-27 04:32:40,327 | INFO     | all payload control threads have been joined
[2025-11-26 23:33:09] 2025-11-27 04:32:40,368 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:40,369 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:40,772 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:40,801 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:40,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:33:09] 2025-11-27 04:32:41,065 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,066 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,073 | INFO     | [job] validate thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,124 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,131 | INFO     | [data] control thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,327 | INFO     | [job] control thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,333 | INFO     | [payload] control thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,369 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,725 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,885 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:41,930 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:42,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:33:09] 2025-11-27 04:32:46,695 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:33:09] 2025-11-27 04:32:59,391 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:33:09] 2025-11-27 04:33:00,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835950475072)>', '<ExcThread(monitor, started 139835461326592)>']
[2025-11-26 23:33:09] 2025-11-27 04:33:05,164 | INFO     | all workflow threads have been joined
[2025-11-26 23:33:09] 2025-11-27 04:33:05,164 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:33:09] 2025-11-27 04:33:05,164 | INFO     | traces error code: 0
[2025-11-26 23:33:09] 2025-11-27 04:33:05,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:33:09] 2025-11-27 04:33:09,016 | INFO     | PID=4061038 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:33:09] 2025-11-27 04:33:09,017 | INFO     | .. there are 53 such processes running
[2025-11-26 23:33:09] 2025-11-27 04:33:09,018 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:33:09] 2025-11-27 04:33:09,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:33:09] 2025-11-27 04:33:09,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:33:09] 2025-11-27 04:33:09,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:33:09] 2025-11-27 04:33:09,018 | INFO     | [monitor] control thread has ended
[2025-11-26 23:33:09] 2025-11-27 04:33:09,287 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:33:09] 2025-11-27 04:33:09,294 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:33:09] 2025-11-27 04:33:09,300 [wrapper] pilotpid: 4061038
[2025-11-26 23:33:09] 2025-11-27 04:33:09,310 [wrapper] Pilot exit status: 0
[2025-11-26 23:33:09] 2025-11-27 04:33:09,377 [wrapper] pandaids: 6896203228
[2025-11-26 23:33:09] 2025-11-27 04:33:09,514 [wrapper] cleanup supervisor_pilot 2336625 4061039
[2025-11-26 23:33:09] 2025-11-27 04:33:09,519 [wrapper] Test setup, not cleaning
[2025-11-26 23:33:09] 2025-11-27 04:33:09,523 [wrapper] apfmon messages muted
[2025-11-26 23:33:09] 2025-11-27 04:33:09,528 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:33:09] 2025-11-27 04:33:09,548 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:33:09]  *** Error codes and diagnostics ***
[2025-11-26 23:33:09]     "exeErrorCode": 0,
[2025-11-26 23:33:09]     "exeErrorDiag": "",
[2025-11-26 23:33:09]     "pilotErrorCode": 0,
[2025-11-26 23:33:09]     "pilotErrorDiag": "",
[2025-11-26 23:33:09]  *** Listing of results directory ***
[2025-11-26 23:33:09] total 1328400
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-26 23:33:09] -rwx------. 1 boincer umatlas     36292 Nov 24 14:40 runpilot2-wrapper.sh
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:40 queuedata.json
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:33:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 23:33:09] -rw-r--r--. 2 boincer umatlas 409258385 Nov 26 00:03 EVNT.47483658._003051.pool.root.1
[2025-11-26 23:33:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 23:33:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 23:33:09] -rw-r--r--. 2 boincer umatlas    590093 Nov 26 00:03 input.tar.gz
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:03 pandaJob.out
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 23:33:09] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:12 boinc_task_state.xml
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 23:28 init_data.xml
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas 922344190 Nov 26 23:30 HITS.47556173._000336.pool.root.1
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas      1071 Nov 26 23:32 memory_monitor_summary.json
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas   2501395 Nov 26 23:32 log.47556173._000336.job.log.tgz.1
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas      8622 Nov 26 23:32 heartbeat.json
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:33 boinc_mmap_file
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:33 wrapper_checkpoint.txt
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas       823 Nov 26 23:33 pilotlog.txt
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas        95 Nov 26 23:33 pilot_heartbeat.json
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas   9875564 Nov 26 23:33 log.47556173._000336.job.log.1
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas       353 Nov 26 23:33 output.list
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:33 runtime_log
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas  12400640 Nov 26 23:33 result.tar.gz
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 23:33 runtime_log.err
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas       662 Nov 26 23:33 7SkLDmtbrh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeBJKDmSKmPMo.diag
[2025-11-26 23:33:09] -rw-r--r--. 1 boincer umatlas     21378 Nov 26 23:33 stderr.txt
[2025-11-26 23:33:09] HITS file was successfully produced:
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas 922344190 Nov 26 23:30 shared/HITS.pool.root.1
[2025-11-26 23:33:09]  *** Contents of shared directory: ***
[2025-11-26 23:33:09] total 1313112
[2025-11-26 23:33:09] -rw-r--r--. 2 boincer umatlas 409258385 Nov 26 00:03 ATLAS.root_0
[2025-11-26 23:33:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 23:33:09] -rw-r--r--. 2 boincer umatlas    590093 Nov 26 00:03 input.tar.gz
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas 922344190 Nov 26 23:30 HITS.pool.root.1
[2025-11-26 23:33:09] -rw-------. 1 boincer umatlas  12400640 Nov 26 23:33 result.tar.gz
23:33:11 (4049229): run_atlas exited; CPU time 280185.901121
23:33:11 (4049229): called boinc_finish(0)

</stderr_txt>
]]>

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