Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:01 (786616): wrapper (7.7.26015): starting
00:03:01 (786616): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:03:01] Arguments: --nthreads 8
[2025-11-26 00:03:01] Threads: 8
[2025-11-26 00:03:01] Checking for CVMFS
[2025-11-26 00:03:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:03] 2.13.3.0 12275 29602 369436 153309 1 110 26109902 40960000 24699 16776704 25 176793302 99.681 150670706 36261 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:03] CVMFS is ok
[2025-11-26 00:03:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:03] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:03] Checking for apptainer binary...
[2025-11-26 00:03:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:03] Running /usr/bin/apptainer --version
[2025-11-26 00:03:03] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:03] c7-11-11.aglt2.org
[2025-11-26 00:03:03] apptainer works
[2025-11-26 00:03:03] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:03:03] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:03:03] Starting ATLAS job with PandaID=6896716155
[2025-11-26 00:03:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:46:53]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:46:53] 2025-11-27 11:45:39,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:46:53] 2025-11-27 11:45:39,552 | INFO     | time since job start (110536s) is within the limit (172800.0s)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,456 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:46:53] 2025-11-27 11:45:41,464 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3289.5277031250002
[2025-11-27 06:46:53] 2025-11-27 11:45:41,482 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896716155/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,482 | INFO     | extracted standard info from prmon json
[2025-11-27 06:46:53] 2025-11-27 11:45:41,482 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:46:53] 2025-11-27 11:45:41,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:46:53] 2025-11-27 11:45:41,513 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:46:53] 2025-11-27 11:45:41,519 | INFO     | sum of square deviations: 1841753827881.1467
[2025-11-27 06:46:53] 2025-11-27 11:45:41,569 | INFO     | time since job start (110538s) is within the limit (172800.0s)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,596 | INFO     | sum of deviations: 8855288921792.746
[2025-11-27 06:46:53] 2025-11-27 11:45:41,596 | INFO     | mean x: 1764188678.1501932
[2025-11-27 06:46:53] 2025-11-27 11:45:41,596 | INFO     | mean y: 2907149.8796245167
[2025-11-27 06:46:53] 2025-11-27 11:45:41,596 | INFO     | intersect: -8479442782.602097
[2025-11-27 06:46:53] 2025-11-27 11:45:41,597 | INFO     | chi2: 6.839002183965305
[2025-11-27 06:46:53] 2025-11-27 11:45:41,601 | INFO     | sum of square deviations: 1826541740747.0063
[2025-11-27 06:46:53] 2025-11-27 11:45:41,717 | INFO     | sum of deviations: 9501755819205.21
[2025-11-27 06:46:53] 2025-11-27 11:45:41,717 | INFO     | mean x: 1764188525.6533775
[2025-11-27 06:46:53] 2025-11-27 11:45:41,717 | INFO     | mean y: 2913630.4379844964
[2025-11-27 06:46:53] 2025-11-27 11:45:41,717 | INFO     | intersect: -9174477838.834694
[2025-11-27 06:46:53] 2025-11-27 11:45:41,718 | INFO     | chi2: 3.3835493520235316
[2025-11-27 06:46:53] 2025-11-27 11:45:41,718 | INFO     | current chi2=3.3835493520235316 (change=50.52568692028514 %)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,720 | INFO     | sum of square deviations: 1811413435102.4702
[2025-11-27 06:46:53] 2025-11-27 11:45:41,765 | INFO     | sum of deviations: 9644226132684.2
[2025-11-27 06:46:53] 2025-11-27 11:45:41,765 | INFO     | mean x: 1764188373.1554692
[2025-11-27 06:46:53] 2025-11-27 11:45:41,765 | INFO     | mean y: 2915064.7706829538
[2025-11-27 06:46:53] 2025-11-27 11:45:41,765 | INFO     | intersect: -9389878033.510117
[2025-11-27 06:46:53] 2025-11-27 11:45:41,767 | INFO     | chi2: 2.9700395918064784
[2025-11-27 06:46:53] 2025-11-27 11:45:41,767 | INFO     | current chi2=2.9700395918064784 (change=12.221183059432951 %)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,767 | INFO     | right removable region: 1800
[2025-11-27 06:46:53] 2025-11-27 11:45:41,768 | INFO     | sum of square deviations: 1826540470117.0063
[2025-11-27 06:46:53] 2025-11-27 11:45:41,828 | INFO     | sum of deviations: 8305291589502.913
[2025-11-27 06:46:53] 2025-11-27 11:45:41,828 | INFO     | mean x: 1764188830.6533775
[2025-11-27 06:46:53] 2025-11-27 11:45:41,828 | INFO     | mean y: 2912660.969545958
[2025-11-27 06:46:53] 2025-11-27 11:45:41,829 | INFO     | intersect: -8018865611.800876
[2025-11-27 06:46:53] 2025-11-27 11:45:41,830 | INFO     | chi2: 4.5147541133513265
[2025-11-27 06:46:53] 2025-11-27 11:45:41,830 | INFO     | current chi2=4.5147541133513265 (change=33.985192694679945 %)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,831 | INFO     | sum of square deviations: 1811411774685.7026
[2025-11-27 06:46:53] 2025-11-27 11:45:41,891 | INFO     | sum of deviations: 8128913900361.272
[2025-11-27 06:46:53] 2025-11-27 11:45:41,891 | INFO     | mean x: 1764188983.1532483
[2025-11-27 06:46:53] 2025-11-27 11:45:41,891 | INFO     | mean y: 2914438.8795113824
[2025-11-27 06:46:53] 2025-11-27 11:45:41,891 | INFO     | intersect: -7914081877.712805
[2025-11-27 06:46:53] 2025-11-27 11:45:41,892 | INFO     | chi2: 4.414219038748103
[2025-11-27 06:46:53] 2025-11-27 11:45:41,892 | INFO     | current chi2=4.414219038748103 (change=2.226811739445897 %)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,893 | INFO     | left removable region: 20
[2025-11-27 06:46:53] 2025-11-27 11:45:41,894 | INFO     | sum of square deviations: 1748783980882.0083
[2025-11-27 06:46:53] 2025-11-27 11:45:41,947 | INFO     | sum of deviations: 8580955182952.924
[2025-11-27 06:46:53] 2025-11-27 11:45:41,947 | INFO     | mean x: 1764188952.6589887
[2025-11-27 06:46:53] 2025-11-27 11:45:41,947 | INFO     | mean y: 2925690.1398876403
[2025-11-27 06:46:53] 2025-11-27 11:45:41,947 | INFO     | intersect: -8653618801.645939
[2025-11-27 06:46:53] 2025-11-27 11:45:41,948 | INFO     | chi2: 0.3825949700990105
[2025-11-27 06:46:53] 2025-11-27 11:45:41,948 | INFO     | current memory leak: 4.91 B/s (using 1780 data points, chi2=0.38)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | could have reported an average CPU frequency of 3282 MHz (64 samples)
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | ..............................
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | . Timing measurements:
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | . get job = 0 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | . initial setup = 2 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | . payload setup = 20 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,949 | INFO     | . stage-in = 0 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,950 | INFO     | . payload execution = 110465 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,950 | INFO     | . stage-out = 3 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,950 | INFO     | . log creation = 1 s
[2025-11-27 06:46:53] 2025-11-27 11:45:41,950 | INFO     | ..............................
[2025-11-27 06:46:53] 2025-11-27 11:45:42,420 | INFO     | 
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | job summary report
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | --------------------------------------------------
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | PanDA job id: 6896716155
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | task id: 47556161
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | errors: (none)
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | pilot state: finished 
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | transexitcode: 0
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | exeerrorcode: 0
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | exeerrordiag: 
[2025-11-27 06:46:53] 2025-11-27 11:45:42,421 | INFO     | exitcode: 0
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | exitmsg: OK
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | cpuconsumptiontime: 198976 s
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | nevents: 1000
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | neventsw: 0
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | pid: 830182
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | pgrp: 830182
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | corecount: 8
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | event service: False
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | sizes: {0: 2284213, 1: 2284213, 11: 2284241, 14: 2284531, 22: 2284559, 110489: 2360605, 110493: 2369599, 110494: 2369655, 110505: 2369901}
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | --------------------------------------------------
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | 
[2025-11-27 06:46:53] 2025-11-27 11:45:42,422 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 06:46:53] 2025-11-27 11:45:42,496 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,497 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | job 6896716155 has completed (purged errors)
[2025-11-27 06:46:53] 2025-11-27 11:45:42,498 | INFO     | overall cleanup function is called
[2025-11-27 06:46:53] 2025-11-27 11:45:43,515 | INFO     | --- collectZombieJob: --- 10, [830182]
[2025-11-27 06:46:53] 2025-11-27 11:45:43,518 | INFO     | zombie collector waiting for pid 830182
[2025-11-27 06:46:53] 2025-11-27 11:45:43,519 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:46:53] 2025-11-27 11:45:43,519 | INFO     | collected zombie processes
[2025-11-27 06:46:53] 2025-11-27 11:45:43,519 | INFO     | will attempt to kill all subprocesses of pid=830182
[2025-11-27 06:46:53] 2025-11-27 11:45:45,002 | INFO     | process IDs to be killed: [830182] (in reverse order)
[2025-11-27 06:46:53] 2025-11-27 11:45:45,439 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:46:53] 2025-11-27 11:45:45,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:46:53] 2025-11-27 11:45:45,465 | INFO     | did not find any defunct processes belonging to 830182
[2025-11-27 06:46:53] 2025-11-27 11:45:45,489 | INFO     | did not find any defunct processes belonging to 830182
[2025-11-27 06:46:53] 2025-11-27 11:45:45,509 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:46:53] 2025-11-27 11:45:45,509 | INFO     | ready for new job
[2025-11-27 06:46:53] 2025-11-27 11:45:45,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:46:53] 2025-11-27 11:45:45,518 | INFO     | ***************************************
[2025-11-27 06:46:53] 2025-11-27 11:45:45,518 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:46:53] 2025-11-27 11:45:45,518 | INFO     | ***************************************
[2025-11-27 06:46:53] 2025-11-27 11:45:45,519 | INFO     | 
[2025-11-27 06:46:53] 2025-11-27 11:45:45,522 | INFO     | architecture information:
[2025-11-27 06:46:53] 2025-11-27 11:45:45,525 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:46:53] 2025-11-27 11:45:45,567 | INFO     | cat /etc/os-release:
[2025-11-27 06:46:53] NAME="CentOS Linux"
[2025-11-27 06:46:53] VERSION="7 (Core)"
[2025-11-27 06:46:53] ID="centos"
[2025-11-27 06:46:53] ID_LIKE="rhel fedora"
[2025-11-27 06:46:53] VERSION_ID="7"
[2025-11-27 06:46:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:46:53] ANSI_COLOR="0;31"
[2025-11-27 06:46:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:46:53] HOME_URL="https://www.centos.org/"
[2025-11-27 06:46:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:46:53] 
[2025-11-27 06:46:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:46:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:46:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:46:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:46:53] 
[2025-11-27 06:46:53] 2025-11-27 11:45:45,575 | INFO     | ***************************************
[2025-11-27 06:46:53] 2025-11-27 11:45:46,078 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 06:46:53] 2025-11-27 11:45:46,153 | INFO     | sufficient remaining disk space (77577846784 B)
[2025-11-27 06:46:53] 2025-11-27 11:45:46,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:46:53] 2025-11-27 11:45:46,153 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:46:53] 2025-11-27 11:45:46,153 | INFO     | update_server=False
[2025-11-27 06:46:53] 2025-11-27 11:45:46,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:46:53] 2025-11-27 11:45:46,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:46:53] 2025-11-27 11:45:46,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:46:53] 2025-11-27 11:45:46,157 | INFO     | aborting loop
[2025-11-27 06:46:53] 2025-11-27 11:45:46,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:46:53] 2025-11-27 11:45:46,402 | INFO     | all job control threads have been joined
[2025-11-27 06:46:53] 2025-11-27 11:45:47,066 | INFO     | all data control threads have been joined
[2025-11-27 06:46:53] 2025-11-27 11:45:47,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:46:53] 2025-11-27 11:45:47,159 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,163 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,412 | INFO     | [job] control thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,469 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,639 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,653 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,684 | INFO     | all payload control threads have been joined
[2025-11-27 06:46:53] 2025-11-27 11:45:47,987 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:47,990 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,072 | INFO     | [data] control thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,124 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,163 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,239 | INFO     | [job] validate thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,374 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:48,690 | INFO     | [payload] control thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:45:50,182 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:46:53] 2025-11-27 11:46:16,692 | INFO     | PID=798406 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 06:46:53] 2025-11-27 11:46:16,692 | INFO     | .. there are 42 such processes running
[2025-11-27 06:46:53] 2025-11-27 11:46:16,693 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:46:53] 2025-11-27 11:46:16,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:46:53] 2025-11-27 11:46:16,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:46:53] 2025-11-27 11:46:44,267 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:46:53] 2025-11-27 11:46:46,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996668671808)>', '<ExcThread(monitor, started 139996304488192)>']
[2025-11-27 06:46:53] 2025-11-27 11:46:46,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:46:53] 2025-11-27 11:46:46,979 | INFO     | [monitor] control thread has ended
[2025-11-27 06:46:53] 2025-11-27 11:46:51,283 | INFO     | all workflow threads have been joined
[2025-11-27 06:46:53] 2025-11-27 11:46:51,283 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:46:53] 2025-11-27 11:46:51,283 | INFO     | traces error code: 0
[2025-11-27 06:46:53] 2025-11-27 11:46:51,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:46:53] 2025-11-27 11:46:51,853 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:46:53] 2025-11-27 11:46:51,882 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:46:53] 2025-11-27 11:46:51,958 [wrapper] pilotpid: 798406
[2025-11-27 06:46:53] 2025-11-27 11:46:51,992 [wrapper] Pilot exit status: 0
[2025-11-27 06:46:53] 2025-11-27 11:46:52,047 [wrapper] pandaids: 6896716155
[2025-11-27 06:46:53] 2025-11-27 11:46:52,185 [wrapper] cleanup supervisor_pilot 1126077 798407
[2025-11-27 06:46:53] 2025-11-27 11:46:52,190 [wrapper] Test setup, not cleaning
[2025-11-27 06:46:53] 2025-11-27 11:46:52,193 [wrapper] apfmon messages muted
[2025-11-27 06:46:53] 2025-11-27 11:46:52,195 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:46:53] 2025-11-27 11:46:52,197 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:46:53]  *** Error codes and diagnostics ***
[2025-11-27 06:46:53]     "exeErrorCode": 0,
[2025-11-27 06:46:53]     "exeErrorDiag": "",
[2025-11-27 06:46:53]     "pilotErrorCode": 0,
[2025-11-27 06:46:53]     "pilotErrorDiag": "",
[2025-11-27 06:46:53]  *** Listing of results directory ***
[2025-11-27 06:46:53] total 1336476
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 02:23 queuedata.json
[2025-11-27 06:46:53] -rwx------. 1 boincer umatlas     36292 Nov 25 02:23 runpilot2-wrapper.sh
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:46:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 06:46:53] -rw-r--r--. 2 boincer umatlas 413496118 Nov 26 00:03 EVNT.47483658._002133.pool.root.1
[2025-11-27 06:46:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 06:46:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 06:46:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:03 input.tar.gz
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:03 pandaJob.out
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-27 06:46:53] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas       533 Nov 27 06:35 boinc_task_state.xml
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas      6904 Nov 27 06:37 init_data.xml
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas 918223999 Nov 27 06:44 HITS.47556161._001169.pool.root.1
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas      1063 Nov 27 06:45 memory_monitor_summary.json
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas   2706524 Nov 27 06:45 log.47556161._001169.job.log.tgz.1
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas      8613 Nov 27 06:45 heartbeat.json
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas        95 Nov 27 06:46 pilot_heartbeat.json
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:46 wrapper_checkpoint.txt
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:46 boinc_mmap_file
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas      4823 Nov 27 06:46 pilotlog.txt
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas  13746139 Nov 27 06:46 log.47556161._001169.job.log.1
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas       353 Nov 27 06:46 output.list
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:46 runtime_log
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas  16476160 Nov 27 06:46 result.tar.gz
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 06:46 runtime_log.err
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas       667 Nov 27 06:46 rPwNDmCa2h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8NJKDmgBUzWo.diag
[2025-11-27 06:46:53] -rw-r--r--. 1 boincer umatlas     21359 Nov 27 06:46 stderr.txt
[2025-11-27 06:46:53] HITS file was successfully produced:
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas 918223999 Nov 27 06:44 shared/HITS.pool.root.1
[2025-11-27 06:46:53]  *** Contents of shared directory: ***
[2025-11-27 06:46:53] total 1317208
[2025-11-27 06:46:53] -rw-r--r--. 2 boincer umatlas 413496118 Nov 26 00:03 ATLAS.root_0
[2025-11-27 06:46:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 06:46:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:03 input.tar.gz
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas 918223999 Nov 27 06:44 HITS.pool.root.1
[2025-11-27 06:46:53] -rw-------. 1 boincer umatlas  16476160 Nov 27 06:46 result.tar.gz
06:46:55 (786616): run_atlas exited; CPU time 200681.514535
06:46:55 (786616): called boinc_finish(0)

</stderr_txt>
]]>

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